Rmu_sc0003092.1_g000033

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003092.1
OG0001302
Physical Location & Seq
Reverse (-)
70534 .. 71016
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003092.1_g000033.1.cds

Sequence Viewer

Length: 483 bp
atggagtctaagatttcattcgctctcatttccttcacagccattgccctactccattccattcatgcccaagactcaccgcaagactatcttgatgcccacaacgcggctagagatgcggtgggtgttgggcccttgacatgggatgaccaagtagcgcgttttgcacaagactatgccaatacccatgtaggtgactgccaactcgtccattccggtgggaaatacggtgaaaaccttgcgatgagcaccggtgacttgtcgggcacagatgccgtcaacatgtgggtgggagagaaggccgactatgattacaactcgaatacttgcgccgctggcaaggtttgtggacattatacgcaggttgtttggcgcaagtcgctacatgttgggtgtgctaaagtgaggtgcaacagtggaggtacctttattgggtgcaactatgatcccccgggcaactatgatggcgaaaaaccttactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

160

Amino Acids

17.26

Weight (kDa)

5.31

Isoelectric Point (pI)

21.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 352
Acc65I GGTACC 1 cut(s) 422
AccB1I GGYRCC 1 cut(s) 422
AccII CGCG 2 cut(s) 107, 160
AciI CCGC 4 cut(s) 80, 107, 119, 333
AclWI GGATC 1 cut(s) 440
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 3 cut(s) 106, 141, 432
AflIII ACRYGT 2 cut(s) 282, 385
AgeI ACCGGT 1 cut(s) 251
Alw21I GWGCWC 1 cut(s) 251
AlwI GGATC 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 451
AoxI GGCC 2 cut(s) 131, 300
ApaI GGGCCC 1 cut(s) 135
AsiGI ACCGGT 1 cut(s) 251
Asp718I GGTACC 1 cut(s) 422
AspLEI GCGC 3 cut(s) 160, 332, 375
AspS9I GGNCC 2 cut(s) 131, 132
AsuC2I CCSGG 2 cut(s) 452, 453
AsuHPI GGTGA 4 cut(s) 69, 206, 242, 266
AvaI CYCGRG 1 cut(s) 451
BaeGI GKGCMC 2 cut(s) 135, 269
BanI GGYRCC 1 cut(s) 422
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 251
BccI CCATC 1 cut(s) 458
BceAI ACGGC 1 cut(s) 260
BcnI CCSGG 2 cut(s) 452, 453
BfaI CTAG 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 352
BisI GCNGC 2 cut(s) 108, 333
BlsI GCNGC 2 cut(s) 109, 334
Bme1390I CCNGG 2 cut(s) 452, 453
BmeT110I CYCGRG 1 cut(s) 451
BmgT120I GGNCC 2 cut(s) 131, 132
BmiI GGNNCC 2 cut(s) 133, 424
BmrFI CCNGG 2 cut(s) 452, 453
BmsI GCATC 3 cut(s) 85, 106, 262
BpuMI CCSGG 2 cut(s) 452, 453
BsaJI CCNNGG 2 cut(s) 450, 451
BsaWI WCCGGW 2 cut(s) 215, 251
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 141, 432
Bse118I RCCGGY 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 450, 451
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 3 cut(s) 106, 141, 432
BseMI GCAATG 1 cut(s) 42
BseSI GKGCMC 2 cut(s) 135, 269
Bsh1236I CGCG 2 cut(s) 107, 160
BshFI GGCC 2 cut(s) 133, 302
BshNI GGYRCC 1 cut(s) 422
BshTI ACCGGT 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 451
BsiSI CCGG 3 cut(s) 216, 252, 452
BslI CCNNNNNNNGG 3 cut(s) 106, 141, 432
BsnI GGCC 2 cut(s) 133, 302
BsoBI CYCGRG 1 cut(s) 451
Bsp120I GGGCCC 1 cut(s) 131
Bsp1286I GDGCHC 3 cut(s) 135, 251, 269
Bsp143I GATC 1 cut(s) 445
BspACI CCGC 4 cut(s) 80, 107, 119, 333
BspANI GGCC 2 cut(s) 133, 302
BspFNI CGCG 2 cut(s) 107, 160
BspLI GGNNCC 2 cut(s) 133, 424
BspMI ACCTGC 1 cut(s) 352
BspPI GGATC 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 422
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 450, 451
BssMI GATC 1 cut(s) 445
Bst4CI ACNGT 2 cut(s) 230, 416
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 2 cut(s) 107, 160
BstHHI GCGC 3 cut(s) 160, 332, 375
BstKTI GATC 1 cut(s) 448
BstMBI GATC 1 cut(s) 445
BstMWI GCNNNNNNNGC 5 cut(s) 104, 116, 164, 336, 379
BstNSI RCATGY 2 cut(s) 286, 389
BstSCI CCNGG 2 cut(s) 450, 451
BstSLI GKGCMC 2 cut(s) 135, 269
BstUI CGCG 2 cut(s) 107, 160
BstXI CCANNNNNNTGG 1 cut(s) 218
BsuRI GGCC 2 cut(s) 133, 302
BtgZI GCGATG 1 cut(s) 257
BtsCI GGATG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 421
BveI ACCTGC 1 cut(s) 352
Cac8I GCNNGC 1 cut(s) 337
CfoI GCGC 3 cut(s) 160, 332, 375
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 2 cut(s) 131, 132
Cfr9I CCCGGG 1 cut(s) 451
Csp6I GTAC 1 cut(s) 423
CspAI ACCGGT 1 cut(s) 251
CspCI CAANNNNNGTGG 2 cut(s) 328, 363
CviAII CATG 5 cut(s) 65, 141, 188, 283, 386
CviJI RGCY 4 cut(s) 41, 110, 133, 302
CviKI_1 RGCY 4 cut(s) 41, 110, 133, 302
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 1 cut(s) 9
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 451
EcoO109I RGGNCCY 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 135
FaeI CATG 5 cut(s) 68, 144, 191, 286, 389
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FatI CATG 5 cut(s) 64, 140, 187, 282, 385
Fnu4HI GCNGC 2 cut(s) 108, 333
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 2 cut(s) 108, 333
FspBI CTAG 1 cut(s) 111
GlaI GCGC 3 cut(s) 159, 331, 374
GluI GCNGC 2 cut(s) 108, 333
HaeIII GGCC 2 cut(s) 133, 302
HapII CCGG 3 cut(s) 216, 252, 452
HhaI GCGC 3 cut(s) 160, 332, 375
Hin1II CATG 5 cut(s) 68, 144, 191, 286, 389
Hin6I GCGC 3 cut(s) 158, 330, 373
HinP1I GCGC 3 cut(s) 158, 330, 373
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 2 cut(s) 5, 74
HpaII CCGG 3 cut(s) 216, 252, 452
HphI GGTGA 4 cut(s) 69, 206, 242, 266
Hpy166II GTNNAC 2 cut(s) 280, 350
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 2 cut(s) 280, 350
HpyAV CCTTC 2 cut(s) 43, 292
HpyCH4III ACNGT 2 cut(s) 230, 416
HpyCH4V TGCA 3 cut(s) 167, 411, 438
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 116, 164, 336, 379
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 5 cut(s) 68, 144, 191, 286, 389
HspAI GCGC 3 cut(s) 158, 330, 373
KpnI GGTACC 1 cut(s) 426
Kzo9I GATC 1 cut(s) 445
LpnPI CCDG 5 cut(s) 229, 265, 321, 347, 465
LweI GCATC 3 cut(s) 85, 106, 262
MaeI CTAG 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 194, 254
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MhlI GDGCHC 3 cut(s) 135, 251, 269
MlyI GAGTC 2 cut(s) 14, 68
MnlI CCTC 2 cut(s) 399, 413
MslI CAYNNNNRTG 3 cut(s) 192, 216, 287
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 3 cut(s) 216, 252, 452
MspR9I CCNGG 2 cut(s) 452, 453
MvnI CGCG 2 cut(s) 107, 160
MwoI GCNNNNNNNGC 5 cut(s) 104, 116, 164, 336, 379
NciI CCSGG 2 cut(s) 452, 453
NdeII GATC 1 cut(s) 445
NlaIII CATG 5 cut(s) 68, 144, 191, 286, 389
NlaIV GGNNCC 2 cut(s) 133, 424
NmuCI GTSAC 2 cut(s) 194, 254
NspI RCATGY 2 cut(s) 286, 389
PciI ACATGT 2 cut(s) 282, 385
PinAI ACCGGT 1 cut(s) 251
PkrI GCNGC 2 cut(s) 109, 334
PleI GAGTC 2 cut(s) 13, 68
PpsI GAGTC 2 cut(s) 13, 68
PscI ACATGT 2 cut(s) 282, 385
PspN4I GGNNCC 2 cut(s) 133, 424
PspOMI GGGCCC 1 cut(s) 131
PspPI GGNCC 2 cut(s) 131, 132
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 3 cut(s) 192, 216, 287
SatI GCNGC 2 cut(s) 108, 333
Sau3AI GATC 1 cut(s) 445
Sau96I GGNCC 2 cut(s) 131, 132
SchI GAGTC 2 cut(s) 14, 68
ScrFI CCNGG 2 cut(s) 452, 453
SduI GDGCHC 3 cut(s) 135, 251, 269
SetI ASST 8 cut(s) 196, 240, 345, 366, 410, 424, 428, 478
SfaNI GCATC 3 cut(s) 85, 106, 262
SgrAI CRCCGGYG 1 cut(s) 251
SmaI CCCGGG 1 cut(s) 453
SmiMI CAYNNNNRTG 3 cut(s) 192, 216, 287
SsiI CCGC 4 cut(s) 80, 107, 119, 333
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 450, 451
TaaI ACNGT 2 cut(s) 230, 416
TaqI TCGA 1 cut(s) 320
TauI GCSGC 2 cut(s) 110, 335
TscAI CASTG 1 cut(s) 421
TseFI GTSAC 2 cut(s) 194, 254
Tsp45I GTSAC 2 cut(s) 194, 254
TspDTI ATGAA 2 cut(s) 6, 53
TspMI CCCGGG 1 cut(s) 451
TspRI CASTG 1 cut(s) 421
XceI RCATGY 2 cut(s) 286, 389
XmaI CCCGGG 1 cut(s) 451
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.