MD05G1110000.v1.1

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0001302
Physical Location & Seq
Reverse (-)
22625621 .. 22625986
366 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1110000.v1.1.491

Sequence Viewer

Length: 366 bp
ATGGGGCTGTGCAAGATTTCCTTATCCTTCCTTTATATTTTAGGCTCAGCCCTAATCCAATTGACTCATGCCCAAGACACACCCCAAGACTTCCTTAATTCCCACAATTCTGCTCGCGCAGCGGTAGGCGTCGATCCCTTGACGTGGGAGGACAATATAGCACGCTTTGCACAAAACCACGCCAACCAATGTACTGGCGACTGCAATATCATGCACTCCTATAGGCCATACAATGAAAACCTTTCTATAAGCATAACTGACTTTCCGGGAGCGGAGGTTATGGATAGGTGGGTGGAGGATAAGGCTGACTATAATTATGAGTCGAACTCGTGTGCTGATGGCAAGATGTATGGGCATTATAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

122

Amino Acids

13.64

Weight (kDa)

4.94

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 32 - 120 3e-11 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 272
AccII CGCG 1 cut(s) 117
AciI CCGC 2 cut(s) 122, 272
AclWI GGATC 1 cut(s) 128
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 144
AjiI CACGTC 1 cut(s) 144
AlwI GGATC 1 cut(s) 128
AoxI GGCC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 119
AsuC2I CCSGG 1 cut(s) 267
BauI CACGAG 1 cut(s) 328
BbvI GCAGC 1 cut(s) 131
BccI CCATC 1 cut(s) 332
BcnI CCSGG 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 220
BisI GCNGC 1 cut(s) 120
BlpI GCTNAGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 267
BmgBI CACGTC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 267
BplI GAGNNNNNCTC 2 cut(s) 311, 343
Bpu1102I GCTNAGC 1 cut(s) 46
BpuMI CCSGG 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 199
BseXI GCAGC 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 226
BsiSI CCGG 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 144
BsnI GGCC 1 cut(s) 226
Bsp143I GATC 1 cut(s) 133
Bsp1720I GCTNAGC 1 cut(s) 46
BspACI CCGC 2 cut(s) 122, 272
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 59
BspFNI CGCG 1 cut(s) 117
BspPI GGATC 1 cut(s) 128
BsrBI CCGCTC 1 cut(s) 272
BsrI ACTGG 1 cut(s) 199
BssMI GATC 1 cut(s) 133
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 328
Bst2BI CACGAG 1 cut(s) 328
BstACI GRCGYC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 115, 163
BstDEI CTNAG 1 cut(s) 46
BstFNI CGCG 1 cut(s) 117
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 119, 167
BstSCI CCNGG 1 cut(s) 265
BstSFI CTRYAG 1 cut(s) 220
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 131
BstXI CCANNNNNNTGG 1 cut(s) 194
BsuRI GGCC 1 cut(s) 226
BtrI CACGTC 1 cut(s) 144
Cac8I GCNNGC 2 cut(s) 115, 163
CfoI GCGC 1 cut(s) 119
CseI GACGC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 192
CviAII CATG 2 cut(s) 68, 211
CviJI RGCY 5 cut(s) 7, 45, 50, 226, 305
CviKI_1 RGCY 5 cut(s) 7, 45, 50, 226, 305
CviQI GTAC 1 cut(s) 192
DdeI CTNAG 1 cut(s) 46
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
FaeI CATG 2 cut(s) 71, 214
FalI AAGNNNNNCTT 3 cut(s) 37, 78, 110
FatI CATG 2 cut(s) 67, 210
Fnu4HI GCNGC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 120
GlaI GCGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 1 cut(s) 226
HapII CCGG 1 cut(s) 266
HgaI GACGC 1 cut(s) 118
HhaI GCGC 1 cut(s) 119
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 2 cut(s) 71, 214
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HinfI GANTC 2 cut(s) 64, 320
HpaII CCGG 1 cut(s) 266
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 4 cut(s) 12, 170, 204, 214
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 167
HpyF3I CTNAG 1 cut(s) 46
HpySE526I ACGT 1 cut(s) 143
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 2 cut(s) 71, 214
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 2 cut(s) 180, 279
Lsp1109I GCAGC 1 cut(s) 131
MaeII ACGT 1 cut(s) 143
MalI GATC 1 cut(s) 135
MbiI CCGCTC 1 cut(s) 272
MboI GATC 1 cut(s) 133
MfeI CAATTG 1 cut(s) 59
MluCI AATT 4 cut(s) 59, 97, 106, 313
MlyI GAGTC 2 cut(s) 58, 329
MnlI CCTC 3 cut(s) 142, 268, 289
MseI TTAA 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 267
MunI CAATTG 1 cut(s) 59
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 119, 167
NciI CCSGG 1 cut(s) 267
NdeII GATC 1 cut(s) 133
NlaIII CATG 2 cut(s) 71, 214
PfoI TCCNGGA 1 cut(s) 265
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 2 cut(s) 58, 328
PpsI GAGTC 2 cut(s) 58, 328
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 2 cut(s) 58, 329
ScrFI CCNGG 1 cut(s) 267
SetI ASST 5 cut(s) 146, 243, 279, 290, 365
SfcI CTRYAG 1 cut(s) 220
Sse9I AATT 4 cut(s) 59, 97, 106, 313
SsiI CCGC 2 cut(s) 122, 272
StyD4I CCNGG 1 cut(s) 265
TaiI ACGT 1 cut(s) 146
TaqI TCGA 2 cut(s) 132, 323
TasI AATT 4 cut(s) 59, 97, 106, 313
TatI WGTACW 1 cut(s) 191
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.