FvH4_2g02860

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001302
Physical Location & Seq
Forward (+)
2250269 .. 2251030
762 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02860.t1

Sequence Viewer

Length: 495 bp
ATGGAGTTGTATAAGATGTCATTCGCTCTCATTTCCCTCACTGCAGCCATCTCCCTTGCCCTGCTCCATTCCATTCATGCCCAAGACACACCGCAAGACTACCTTGATGCCCACAACGCGGCTAGAGCAGCGGTGGGTGTCGCGCCCTTGACATGGGATGACCAAGTAGCGCGTTTCGCACAAGACTATGCCAATACTCACGTAGATGATTGCCAACTCGTCCATTCCAATGGACAATACGGTGAAAATCTTGCGATGGGCTCCGGCGACTTGTCGGGCACAGATGCCGTCAACCTGTGGATCGGAGAGAAGGCCGACTATGATTACAACTCGAACACTTGCGCCGCTGGTAAGGTCTGTGGGCATTATACACAGGTCGTTTGGCGAAACTCGCTACATGTCGGGTGTGCTAAAGTGAGGTGTAACAGTGGGGGTACCTTCATTGGGTGCAACTATGATCCCCCGGGCAACTGGGTTGGGGAAAAACCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

165

Amino Acids

17.74

Weight (kDa)

5.1

Isoelectric Point (pI)

17.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 35 - 152 6.5e-21 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 434
AccB1I GGYRCC 1 cut(s) 434
AccII CGCG 3 cut(s) 119, 143, 172
AciI CCGC 4 cut(s) 92, 119, 131, 345
AclWI GGATC 2 cut(s) 308, 452
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 3 cut(s) 118, 153, 444
AflIII ACRYGT 1 cut(s) 397
AlwI GGATC 2 cut(s) 308, 452
Ama87I CYCGRG 1 cut(s) 463
AoxI GGCC 1 cut(s) 312
ApeKI GCWGC 2 cut(s) 44, 128
Asp718I GGTACC 1 cut(s) 434
AspLEI GCGC 3 cut(s) 145, 172, 344
AsuC2I CCSGG 2 cut(s) 464, 465
AsuHPI GGTGA 1 cut(s) 254
AvaI CYCGRG 1 cut(s) 463
BaeGI GKGCMC 1 cut(s) 281
BanI GGYRCC 1 cut(s) 434
BanII GRGCYC 1 cut(s) 263
BbvI GCAGC 2 cut(s) 56, 140
BccI CCATC 2 cut(s) 56, 250
BceAI ACGGC 1 cut(s) 272
BcnI CCSGG 2 cut(s) 464, 465
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 4 cut(s) 45, 120, 129, 345
BlsI GCNGC 4 cut(s) 46, 121, 130, 346
Bme1390I CCNGG 2 cut(s) 464, 465
BmeT110I CYCGRG 1 cut(s) 463
BmiI GGNNCC 2 cut(s) 262, 436
BmrFI CCNGG 2 cut(s) 464, 465
BmrI ACTGGG 1 cut(s) 481
BmsI GCATC 2 cut(s) 97, 274
BmuI ACTGGG 1 cut(s) 481
BpuMI CCSGG 2 cut(s) 464, 465
BsaAI YACGTR 1 cut(s) 202
BsaJI CCNNGG 2 cut(s) 462, 463
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 153, 444
Bse1I ACTGG 1 cut(s) 476
BseDI CCNNGG 2 cut(s) 462, 463
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 3 cut(s) 118, 153, 444
BseNI ACTGG 1 cut(s) 476
BseSI GKGCMC 1 cut(s) 281
BseXI GCAGC 2 cut(s) 56, 140
Bsh1236I CGCG 3 cut(s) 119, 143, 172
BshFI GGCC 1 cut(s) 314
BshNI GGYRCC 1 cut(s) 434
BsiHKCI CYCGRG 1 cut(s) 463
BsiSI CCGG 2 cut(s) 264, 464
BslI CCNNNNNNNGG 3 cut(s) 118, 153, 444
BsnI GGCC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 463
Bsp1286I GDGCHC 2 cut(s) 263, 281
Bsp143I GATC 2 cut(s) 300, 457
BspACI CCGC 4 cut(s) 92, 119, 131, 345
BspANI GGCC 1 cut(s) 314
BspFNI CGCG 3 cut(s) 119, 143, 172
BspLI GGNNCC 2 cut(s) 262, 436
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 2 cut(s) 308, 452
BspT107I GGYRCC 1 cut(s) 434
BsrI ACTGG 1 cut(s) 476
BssECI CCNNGG 2 cut(s) 462, 463
BssMI GATC 2 cut(s) 300, 457
Bst4CI ACNGT 2 cut(s) 242, 428
BstBAI YACGTR 1 cut(s) 202
BstF5I GGATG 1 cut(s) 163
BstFNI CGCG 3 cut(s) 119, 143, 172
BstHHI GCGC 3 cut(s) 145, 172, 344
BstKTI GATC 2 cut(s) 303, 460
BstMBI GATC 2 cut(s) 300, 457
BstMWI GCNNNNNNNGC 5 cut(s) 116, 125, 128, 176, 391
BstNSI RCATGY 1 cut(s) 401
BstSCI CCNGG 2 cut(s) 462, 463
BstSFI CTRYAG 1 cut(s) 42
BstSLI GKGCMC 1 cut(s) 281
BstUI CGCG 3 cut(s) 119, 143, 172
BstV1I GCAGC 2 cut(s) 56, 140
BstXI CCANNNNNNTGG 1 cut(s) 230
BsuRI GGCC 1 cut(s) 314
BtgZI GCGATG 1 cut(s) 269
BtsCI GGATG 1 cut(s) 163
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 39, 433
CfoI GCGC 3 cut(s) 145, 172, 344
Cfr9I CCCGGG 1 cut(s) 463
Csp6I GTAC 1 cut(s) 435
CviAII CATG 3 cut(s) 77, 153, 398
CviJI RGCY 4 cut(s) 47, 122, 261, 314
CviKI_1 RGCY 4 cut(s) 47, 122, 261, 314
CviQI GTAC 1 cut(s) 435
DpnI GATC 2 cut(s) 302, 459
DpnII GATC 2 cut(s) 300, 457
Eco24I GRGCYC 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 463
EcoT38I GRGCYC 1 cut(s) 263
FaeI CATG 3 cut(s) 80, 156, 401
FaiI YATR 8 cut(s) 12, 78, 154, 189, 321, 369, 399, 456
FalI AAGNNNNNCTT 2 cut(s) 87, 119
FatI CATG 3 cut(s) 76, 152, 397
Fnu4HI GCNGC 4 cut(s) 45, 120, 129, 345
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 4 cut(s) 45, 120, 129, 345
FspBI CTAG 1 cut(s) 123
GlaI GCGC 3 cut(s) 144, 171, 343
GluI GCNGC 4 cut(s) 45, 120, 129, 345
HaeIII GGCC 1 cut(s) 314
HapII CCGG 2 cut(s) 264, 464
HhaI GCGC 3 cut(s) 145, 172, 344
Hin1II CATG 3 cut(s) 80, 156, 401
Hin6I GCGC 3 cut(s) 143, 170, 342
HinP1I GCGC 3 cut(s) 143, 170, 342
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HpaII CCGG 2 cut(s) 264, 464
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 305
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 2 cut(s) 304, 448
HpyCH4III ACNGT 2 cut(s) 242, 428
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 2 cut(s) 44, 450
HpyF10VI GCNNNNNNNGC 5 cut(s) 116, 125, 128, 176, 391
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 3 cut(s) 80, 156, 401
HspAI GCGC 3 cut(s) 143, 170, 342
KpnI GGTACC 1 cut(s) 438
Kzo9I GATC 2 cut(s) 300, 457
LmnI GCTCC 2 cut(s) 69, 266
LpnPI CCDG 7 cut(s) 74, 277, 308, 333, 359, 457, 477
Lsp1109I GCAGC 2 cut(s) 56, 140
LweI GCATC 2 cut(s) 97, 274
MaeI CTAG 1 cut(s) 123
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 422
MalI GATC 2 cut(s) 302, 459
MboI GATC 2 cut(s) 300, 457
MhlI GDGCHC 2 cut(s) 263, 281
MnlI CCTC 2 cut(s) 47, 411
MslI CAYNNNNRTG 2 cut(s) 204, 228
MspA1I CMGCKG 2 cut(s) 131, 347
MspI CCGG 2 cut(s) 264, 464
MspR9I CCNGG 2 cut(s) 464, 465
MvnI CGCG 3 cut(s) 119, 143, 172
MwoI GCNNNNNNNGC 5 cut(s) 116, 125, 128, 176, 391
NciI CCSGG 2 cut(s) 464, 465
NdeII GATC 2 cut(s) 300, 457
NlaIII CATG 3 cut(s) 80, 156, 401
NlaIV GGNNCC 2 cut(s) 262, 436
NspI RCATGY 1 cut(s) 401
PciI ACATGT 1 cut(s) 397
PkrI GCNGC 4 cut(s) 46, 121, 130, 346
Ppu21I YACGTR 1 cut(s) 202
PscI ACATGT 1 cut(s) 397
PspN4I GGNNCC 2 cut(s) 262, 436
PstI CTGCAG 1 cut(s) 46
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
RseI CAYNNNNRTG 2 cut(s) 204, 228
SatI GCNGC 4 cut(s) 45, 120, 129, 345
Sau3AI GATC 2 cut(s) 300, 457
ScrFI CCNGG 2 cut(s) 464, 465
SduI GDGCHC 2 cut(s) 263, 281
SetI ASST 8 cut(s) 105, 204, 297, 357, 378, 422, 440, 490
SfaNI GCATC 2 cut(s) 97, 274
SfcI CTRYAG 1 cut(s) 42
SmaI CCCGGG 1 cut(s) 465
SmiMI CAYNNNNRTG 2 cut(s) 204, 228
SsiI CCGC 4 cut(s) 92, 119, 131, 345
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 2 cut(s) 462, 463
TaaI ACNGT 2 cut(s) 242, 428
TaiI ACGT 1 cut(s) 204
TaqI TCGA 1 cut(s) 332
TauI GCSGC 2 cut(s) 122, 347
TscAI CASTG 2 cut(s) 46, 433
TseI GCWGC 2 cut(s) 44, 128
TspDTI ATGAA 2 cut(s) 65, 430
TspMI CCCGGG 1 cut(s) 463
TspRI CASTG 2 cut(s) 46, 433
XceI RCATGY 1 cut(s) 401
XmaI CCCGGG 1 cut(s) 463
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.