AT3G19690

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001302
Physical Location & Seq
Reverse (-)
6842220 .. 6842856
637 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19690.1

Sequence Viewer

Length: 486 bp
ATGTCTCTACTCAAAACCAACATTTTATTTCTCTTAGCAATTGCTCTTTTCTATGGCTCTTTAGCCGAAGATTTGCAACAACAATTCTTAGAGGCCCACAACGAAGCCCGAAACGAGGTTGGGCTCGACCCATTGGTTTGGGACGATGAGGTCGCTGCATATGCGGCAAGCTATGCAAACCAGAGGATCAATGATTGTGCATTAGTCCATTCGAATGGACCATTTGGAGAGAACATAGCGATGAGTAGTGGAGAAATGTCGGCTGAAGATGCTGCGGAAATGTGGATCAACGAGAAACAGTACTACGATTACGATAGTAACACGTGTAATGATCCAAACGGTGGCACCTGTCTACATTACACGCAAGTTGTTTGGAAAAACACAGTTCGTTTGGGATGTGCTAAAGTTGTGTGTAACAGTGGTGGTACTTTTATTACATGCAACTATGATCCTCCTGGTAATTACATTGGTGAAAAACCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

161

Amino Acids

17.81

Weight (kDa)

4.31

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 30 - 149 9.2e-22 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
AccB1I GGYRCC 1 cut(s) 344
AccB7I CCANNNNNTGG 1 cut(s) 341
AccI GTMKAC 1 cut(s) 352
AciI CCGC 2 cut(s) 164, 275
AclWI GGATC 4 cut(s) 194, 293, 326, 443
AcuI CTGAAG 1 cut(s) 285
AcvI CACGTG 1 cut(s) 324
AfaI GTAC 2 cut(s) 302, 427
AfiI CCNNNNNNNGG 2 cut(s) 115, 341
AflIII ACRYGT 2 cut(s) 321, 323
AjnI CCWGG 1 cut(s) 454
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 4 cut(s) 194, 293, 326, 443
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 2 cut(s) 155, 272
AspS9I GGNCC 2 cut(s) 94, 218
AsuHPI GGTGA 1 cut(s) 482
AsuII TTCGAA 1 cut(s) 212
AvaII GGWCC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 344
BanII GRGCYC 1 cut(s) 126
BbrPI CACGTG 1 cut(s) 324
BbvI GCAGC 2 cut(s) 142, 259
BciT130I CCWGG 1 cut(s) 456
BcoDI GTCTC 1 cut(s) 9
BisI GCNGC 3 cut(s) 156, 165, 273
BlsI GCNGC 3 cut(s) 157, 166, 274
BmcAI AGTACT 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 456
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 2 cut(s) 94, 218
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 1 cut(s) 456
BmsI GCATC 1 cut(s) 259
Bpu14I TTCGAA 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 324
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 341
BseBI CCWGG 1 cut(s) 456
BseGI GGATG 1 cut(s) 401
BseLI CCNNNNNNNGG 2 cut(s) 115, 341
BseXI GCAGC 2 cut(s) 142, 259
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 344
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 2 cut(s) 115, 341
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 1 cut(s) 95
Bsp119I TTCGAA 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 4 cut(s) 186, 285, 331, 448
BspACI CCGC 2 cut(s) 164, 275
BspANI GGCC 1 cut(s) 95
BspLI GGNNCC 1 cut(s) 346
BspPI GGATC 4 cut(s) 194, 293, 326, 443
BspT104I TTCGAA 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 344
BssMI GATC 4 cut(s) 186, 285, 331, 448
Bst2UI CCWGG 1 cut(s) 456
Bst4CI ACNGT 4 cut(s) 300, 341, 385, 419
BstAPI GCANNNNNTGC 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 324
BstBI TTCGAA 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 2 cut(s) 34, 88
BstF5I GGATG 1 cut(s) 401
BstKTI GATC 4 cut(s) 189, 288, 334, 451
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 4 cut(s) 186, 285, 331, 448
BstMWI GCNNNNNNNGC 4 cut(s) 161, 164, 173, 269
BstNI CCWGG 1 cut(s) 456
BstNSI RCATGY 1 cut(s) 441
BstSCI CCNGG 1 cut(s) 454
BstV1I GCAGC 2 cut(s) 142, 259
BstXI CCANNNNNNTGG 2 cut(s) 138, 215
BsuRI GGCC 1 cut(s) 95
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 401
BtsIMutI CAGTG 1 cut(s) 424
Cac8I GCNNGC 1 cut(s) 169
Cfr13I GGNCC 2 cut(s) 94, 218
Csp6I GTAC 2 cut(s) 301, 426
CviAII CATG 1 cut(s) 438
CviJI RGCY 7 cut(s) 57, 65, 95, 107, 124, 171, 263
CviKI_1 RGCY 7 cut(s) 57, 65, 95, 107, 124, 171, 263
CviQI GTAC 2 cut(s) 301, 426
DdeI CTNAG 2 cut(s) 34, 88
DpnI GATC 4 cut(s) 188, 287, 333, 450
DpnII GATC 4 cut(s) 186, 285, 331, 448
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 285
Eco72I CACGTG 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 1 cut(s) 441
FaiI YATR 7 cut(s) 54, 160, 162, 174, 236, 439, 447
FaqI GGGAC 1 cut(s) 155
FatI CATG 1 cut(s) 437
FauNDI CATATG 1 cut(s) 160
FblI GTMKAC 1 cut(s) 352
Fnu4HI GCNGC 3 cut(s) 156, 165, 273
FokI GGATG 1 cut(s) 408
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 3 cut(s) 156, 165, 273
GluI GCNGC 3 cut(s) 156, 165, 273
HaeIII GGCC 1 cut(s) 95
Hin1II CATG 1 cut(s) 441
HphI GGTGA 1 cut(s) 482
Hpy166II GTNNAC 1 cut(s) 353
Hpy8I GTNNAC 1 cut(s) 353
HpyCH4III ACNGT 4 cut(s) 300, 341, 385, 419
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 5 cut(s) 76, 158, 176, 200, 441
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 164, 173, 269
HpyF3I CTNAG 2 cut(s) 34, 88
HpySE526I ACGT 1 cut(s) 323
Hsp92II CATG 1 cut(s) 441
Kzo9I GATC 4 cut(s) 186, 285, 331, 448
LpnPI CCDG 4 cut(s) 194, 361, 441, 468
Lsp1109I GCAGC 2 cut(s) 142, 259
LweI GCATC 1 cut(s) 259
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 2 cut(s) 317, 413
MalI GATC 4 cut(s) 188, 287, 333, 450
MboI GATC 4 cut(s) 186, 285, 331, 448
MboII GAAGA 2 cut(s) 80, 278
MfeI CAATTG 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 3 cut(s) 39, 83, 460
MnlI CCTC 5 cut(s) 85, 109, 142, 177, 462
MslI CAYNNNNRTG 2 cut(s) 213, 239
MspR9I CCNGG 1 cut(s) 456
MunI CAATTG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 456
MwoI GCNNNNNNNGC 4 cut(s) 161, 164, 173, 269
NdeI CATATG 1 cut(s) 160
NdeII GATC 4 cut(s) 186, 285, 331, 448
NlaIII CATG 1 cut(s) 441
NlaIV GGNNCC 1 cut(s) 346
NspI RCATGY 1 cut(s) 441
NspV TTCGAA 1 cut(s) 212
PflMI CCANNNNNTGG 1 cut(s) 341
PkrI GCNGC 3 cut(s) 157, 166, 274
PmaCI CACGTG 1 cut(s) 324
PmlI CACGTG 1 cut(s) 324
Ppu21I YACGTR 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 454
PspCI CACGTG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 454
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 2 cut(s) 94, 218
RsaI GTAC 2 cut(s) 302, 427
RsaNI GTAC 2 cut(s) 301, 426
RseI CAYNNNNRTG 2 cut(s) 213, 239
SatI GCNGC 3 cut(s) 156, 165, 273
Sau3AI GATC 4 cut(s) 186, 285, 331, 448
Sau96I GGNCC 2 cut(s) 94, 218
ScaI AGTACT 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 456
SduI GDGCHC 1 cut(s) 126
SetI ASST 5 cut(s) 120, 153, 173, 326, 350
SfaNI GCATC 1 cut(s) 259
SfuI TTCGAA 1 cut(s) 212
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 2 cut(s) 213, 239
Sse9I AATT 3 cut(s) 39, 83, 460
SsiI CCGC 2 cut(s) 164, 275
StyD4I CCNGG 1 cut(s) 454
TaaI ACNGT 4 cut(s) 300, 341, 385, 419
TaiI ACGT 1 cut(s) 326
TaqI TCGA 2 cut(s) 126, 212
TasI AATT 3 cut(s) 39, 83, 460
TatI WGTACW 1 cut(s) 300
TauI GCSGC 1 cut(s) 167
TscAI CASTG 1 cut(s) 424
TseI GCWGC 2 cut(s) 155, 272
TspRI CASTG 1 cut(s) 424
Van91I CCANNNNNTGG 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 218
XceI RCATGY 1 cut(s) 441
XmiI GTMKAC 1 cut(s) 352
ZrmI AGTACT 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.