Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001302

Physical Location & Seq

Genomic Coordinates Reverse (-)

16572303 .. 16574473

Gene Structure 2171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G153200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCGTTCAACATCAAGCTTCTTCTGGCCATCTGCTCCGTCGCATTGTTCTTCACTCTTGTCTCTGCAGACCTTTCCAAAGAAGATATCGATGGCTTCGTGGAGGAACACAACAAGGCCCGCGCCCAGGTCGGCAACCGTCCACTCAAATGGAACGCGACCCTAGCCAAGTATGCCCAAGATTATGCAGACAAGAGAGTTGATGACTGCGCCATGGAGCACTCAATGGGGCCTTATGGTGAGAACTTGGCCTCAGGAGAAGGCATCACCGCTGATTTGTCGGGCACGGATGCCGTGAACATGTGGGTGGCAGAGAAGGCCTTCTATAACTACGACTCTAACACTTGTGCCGATGGCAAGGTGTGTGGGCATTATACGCAGGTTATTTGGCGTAACACAACTCGTGTAGGGTGTGCAAAAGTGAGGTGCAACAGTGGAGGTACCTTCATCGGGTGCAACTTTGATCCACCAGGCAACTATGTTGGGCAGAAGCCTTACAAGCCTTACAACTCCTATGCGAAAATTCTACCATGTGCCAGGTGCATGGATGTTCCAATAATATTCACCATTGGCAACAATGTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

196

Amino Acids

21.44

Weight (kDa)

5.93

Isoelectric Point (pI)

23.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14580 AT2G14610 AT3G19690 AT4G33720 AT4G33730
fragaria_vesca	FvH4_2g02860 FvH4_2g02912
malus_domestica	MD05G1108800.v1.1 MD05G1109100.v1.1 MD05G1109700.v1.1 MD05G1110000.v1.1
prunus_persica	Prupe.8G102800_v2.0.a1 Prupe.8G152900_v2.0.a1 Prupe.8G153100_v2.0.a1 Prupe.8G153200_v2.0.a1 Prupe.8G153500_v2.0.a1 Prupe.8G153700_v2.0.a1 Prupe.8G153800_v2.0.a1
pyrus_communis	pycom05g10520
rosa_chinensis	RchiOBHm_Chr6g0247671 RchiOBHm_Chr6g0247681 RchiOBHm_Chr6g0264301
rosa_laevigata	RLG00000014266 RLG00000014268 RLG00000014270 RLG00000015186 RLG00000015187 RLG00000036357 RLG00000036358 RLG00000036359 RLG00000036360
rosa_multiflora	Rmu_co8203636.1_g000001 Rmu_sc0000147.1_g000017 Rmu_sc0000147.1_g000029 Rmu_sc0003092.1_g000033 Rmu_sc0013122.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431690 Rroxscaffold_7G00213790 Rroxscaffold_7G00213800
rosa_rugosa	Rorug05G0527800 Rorug05G0527900 Rorug06G0011700
rosa_samantha	Rh6AG042300 Rh6AG131500 Rh6BG037200 Rh6BG128300 Rh6CG036300 Rh6CG036500 Rh6CG126700 Rh6DG033300 Rh6DG033500 Rh6DG113800
rosa_wichuraiana	Rw6G003660 Rw6G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	370
Acc65I	GGTACC	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	440
AccII	CGCG	2 cut(s)	123, 158
AciI	CCGC	2 cut(s)	121, 270
AclWI	GGATC	1 cut(s)	458
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	522
AfaI	GTAC	1 cut(s)	442
AfiI	CCNNNNNNNGG	2 cut(s)	127, 450
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	3 cut(s)	126, 469, 536
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	1 cut(s)	458
AoxI	GGCC	5 cut(s)	27, 117, 230, 249, 318
ApoI	RAATTY	1 cut(s)	522
Asp700I	GAANNNNTTC	1 cut(s)	320
Asp718I	GGTACC	1 cut(s)	440
AspLEI	GCGC	2 cut(s)	125, 212
AspS9I	GGNCC	2 cut(s)	118, 230
AsuHPI	GGTGA	3 cut(s)	251, 259, 556
AxyI	CCTNAGG	1 cut(s)	253
BaeGI	GKGCMC	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	440
BauI	CACGAG	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	222
BccI	CCATC	3 cut(s)	38, 86, 347
BceAI	ACGGC	1 cut(s)	278
BciT130I	CCWGG	3 cut(s)	128, 471, 538
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	66
BfuAI	ACCTGC	1 cut(s)	370
Bme1390I	CCNGG	3 cut(s)	128, 471, 538
BmgT120I	GGNCC	2 cut(s)	118, 230
BmiI	GGNNCC	2 cut(s)	231, 442
BmrFI	CCNGG	3 cut(s)	128, 471, 538
BmsI	GCATC	2 cut(s)	273, 280
Bsa29I	ATCGAT	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	126, 213
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 450
Bse21I	CCTNAGG	1 cut(s)	253
BseBI	CCWGG	3 cut(s)	128, 471, 538
BseCI	ATCGAT	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	126, 213
BseGI	GGATG	2 cut(s)	295, 553
BseLI	CCNNNNNNNGG	2 cut(s)	127, 450
BseMII	CTCAG	1 cut(s)	267
BseSI	GKGCMC	1 cut(s)	287
Bsh1236I	CGCG	2 cut(s)	123, 158
BshFI	GGCC	5 cut(s)	29, 119, 232, 251, 320
BshNI	GGYRCC	1 cut(s)	440
BshVI	ATCGAT	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	222
BslI	CCNNNNNNNGG	2 cut(s)	127, 450
BsmAI	GTCTC	1 cut(s)	67
BsnI	GGCC	5 cut(s)	29, 119, 232, 251, 320
Bsp1286I	GDGCHC	2 cut(s)	222, 287
Bsp143I	GATC	1 cut(s)	463
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	2 cut(s)	121, 270
BspANI	GGCC	5 cut(s)	29, 119, 232, 251, 320
BspCNI	CTCAG	1 cut(s)	266
BspDI	ATCGAT	1 cut(s)	90
BspFNI	CGCG	2 cut(s)	123, 158
BspLI	GGNNCC	2 cut(s)	231, 442
BspMAI	CTGCAG	1 cut(s)	70
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	1 cut(s)	458
BspT107I	GGYRCC	1 cut(s)	440
BssECI	CCNNGG	2 cut(s)	126, 213
BssMI	GATC	1 cut(s)	463
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	3 cut(s)	128, 471, 538
Bst4CI	ACNGT	2 cut(s)	140, 434
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	253
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	295, 553
BstFNI	CGCG	2 cut(s)	123, 158
BstHHI	GCGC	2 cut(s)	125, 212
BstKTI	GATC	1 cut(s)	466
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	463
BstMWI	GCNNNNNNNGC	5 cut(s)	164, 173, 317, 376, 499
BstNI	CCWGG	3 cut(s)	128, 471, 538
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	3 cut(s)	126, 469, 536
BstSFI	CTRYAG	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	287
BstUI	CGCG	2 cut(s)	123, 158
BstXI	CCANNNNNNTGG	2 cut(s)	150, 544
Bsu15I	ATCGAT	1 cut(s)	90
Bsu36I	CCTNAGG	1 cut(s)	253
BsuRI	GGCC	5 cut(s)	29, 119, 232, 251, 320
BsuTUI	ATCGAT	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	295, 553
BtsIMutI	CAGTG	1 cut(s)	439
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	121
CfoI	GCGC	2 cut(s)	125, 212
Cfr13I	GGNCC	2 cut(s)	118, 230
ClaI	ATCGAT	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	441
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	4 cut(s)	214, 301, 531, 544
CviQI	GTAC	1 cut(s)	441
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	1 cut(s)	465
DpnII	GATC	1 cut(s)	463
EaeI	YGGCCR	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	320
Eco32I	GATATC	1 cut(s)	88
Eco81I	CCTNAGG	1 cut(s)	253
EcoO109I	RGGNCCY	1 cut(s)	230
EcoRII	CCWGG	3 cut(s)	126, 469, 536
EcoRV	GATATC	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	4 cut(s)	217, 304, 534, 547
FatI	CATG	4 cut(s)	213, 300, 530, 543
FauI	CCCGC	1 cut(s)	128
FokI	GGATG	2 cut(s)	302, 560
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	2 cut(s)	124, 211
HaeIII	GGCC	5 cut(s)	29, 119, 232, 251, 320
HhaI	GCGC	2 cut(s)	125, 212
Hin1II	CATG	4 cut(s)	217, 304, 534, 547
Hin6I	GCGC	2 cut(s)	123, 210
HinP1I	GCGC	2 cut(s)	123, 210
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	1 cut(s)	335
HphI	GGTGA	3 cut(s)	251, 259, 556
Hpy166II	GTNNAC	2 cut(s)	143, 298
Hpy188III	TCNNGA	1 cut(s)	255
Hpy8I	GTNNAC	2 cut(s)	143, 298
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	4 cut(s)	254, 310, 331, 454
HpyCH4III	ACNGT	2 cut(s)	140, 434
HpyCH4V	TGCA	6 cut(s)	68, 188, 416, 429, 456, 543
HpyF10VI	GCNNNNNNNGC	5 cut(s)	164, 173, 317, 376, 499
HpyF3I	CTNAG	1 cut(s)	253
Hsp92II	CATG	4 cut(s)	217, 304, 534, 547
HspAI	GCGC	2 cut(s)	123, 210
KpnI	GGTACC	1 cut(s)	444
Kzo9I	GATC	1 cut(s)	463
LmnI	GCTCC	2 cut(s)	41, 217
LpnPI	CCDG	9 cut(s)	11, 113, 140, 240, 365, 456, 483, 523, 550
LweI	GCATC	2 cut(s)	273, 280
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	1 cut(s)	465
MboI	GATC	1 cut(s)	463
MboII	GAAGA	3 cut(s)	14, 43, 95
MhlI	GDGCHC	2 cut(s)	222, 287
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	1 cut(s)	522
MluNI	TGGCCA	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	4 cut(s)	97, 262, 417, 431
Mox20I	TGGCCA	1 cut(s)	29
MroXI	GAANNNNTTC	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	29
MslI	CAYNNNNRTG	2 cut(s)	148, 305
Msp20I	TGGCCA	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	272
MspR9I	CCNGG	3 cut(s)	128, 471, 538
MvaI	CCWGG	3 cut(s)	128, 471, 538
MvnI	CGCG	2 cut(s)	123, 158
MwoI	GCNNNNNNNGC	5 cut(s)	164, 173, 317, 376, 499
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	1 cut(s)	463
NlaIII	CATG	4 cut(s)	217, 304, 534, 547
NlaIV	GGNNCC	2 cut(s)	231, 442
NspI	RCATGY	1 cut(s)	304
PceI	AGGCCT	1 cut(s)	320
PciI	ACATGT	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	320
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
PscI	ACATGT	1 cut(s)	300
Psp6I	CCWGG	3 cut(s)	126, 469, 536
PspGI	CCWGG	3 cut(s)	126, 469, 536
PspN4I	GGNNCC	2 cut(s)	231, 442
PspPI	GGNCC	2 cut(s)	118, 230
PstI	CTGCAG	1 cut(s)	70
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
RseI	CAYNNNNRTG	2 cut(s)	148, 305
Sau3AI	GATC	1 cut(s)	463
Sau96I	GGNCC	2 cut(s)	118, 230
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	3 cut(s)	128, 471, 538
SduI	GDGCHC	2 cut(s)	222, 287
SetI	ASST	9 cut(s)	21, 75, 132, 363, 384, 428, 442, 446, 542
SfaNI	GCATC	2 cut(s)	273, 280
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	2 cut(s)	148, 305
Sse9I	AATT	1 cut(s)	522
SseBI	AGGCCT	1 cut(s)	320
SsiI	CCGC	2 cut(s)	121, 270
SspI	AATATT	1 cut(s)	561
SspMI	CTAG	1 cut(s)	164
StuI	AGGCCT	1 cut(s)	320
StyD4I	CCNGG	3 cut(s)	126, 469, 536
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	140, 434
TaqI	TCGA	1 cut(s)	90
TasI	AATT	1 cut(s)	522
TscAI	CASTG	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	436
TspGWI	ACGGA	2 cut(s)	28, 302
TspRI	CASTG	1 cut(s)	439
XapI	RAATTY	1 cut(s)	522
XceI	RCATGY	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.