RLG00000036357

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001302
Physical Location & Seq
Forward (+)
79661221 .. 79661706
486 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036357

Sequence Viewer

Length: 423 bp
ATGGAATTGTCTAAGATTTCATTATCCCTCATTTCCCTCGTAGCCTTCGCCCTACTCCATTCCACTCATGCACAAAACTCACCCCAAGACTACCTCAATGCCCACAACAGTGCTCGAGCCGCCTCACATATTGGTGATTGCAACCTGGTGCATTCTGGTGGGCCTTACGGCGAAAACCTTGCAAAGAGCACCGGCGACTTATCAGGCACATCTGCTGTGAACTTGTGGGTGGGAGAGAAGGCAAACTATGATTACAACTCTAACACATGTGCTTCTGGCAAGGTCTGTGGCCATTATATGCAGGTCGTTTGGCGCAACTCGACACGTGTGGGGTGTGCCAAAGTGAGGTGCAACAATGGAGGCACTTTCATCGGGTGCAATTATGATCCCAGGGGAAACATCGTTGGTCAGAAGCCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

141

Amino Acids

14.97

Weight (kDa)

8.56

Isoelectric Point (pI)

24.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 59 - 128 3.9e-09 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 292
AciI CCGC 1 cut(s) 120
AclWI GGATC 1 cut(s) 380
AcoI YGGCCR 1 cut(s) 289
AcvI CACGTG 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 345
AflIII ACRYGT 3 cut(s) 266, 323, 325
AjnI CCWGG 2 cut(s) 144, 389
AleI CACNNNNGTG 1 cut(s) 108
Alw21I GWGCWC 2 cut(s) 115, 191
AlwI GGATC 1 cut(s) 380
Ama87I CYCGRG 1 cut(s) 114
AoxI GGCC 2 cut(s) 161, 289
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 72, 146
AvaI CYCGRG 1 cut(s) 114
BalI TGGCCA 1 cut(s) 291
BbrPI CACGTG 1 cut(s) 326
Bbv12I GWGCWC 2 cut(s) 115, 191
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 4 cut(s) 161, 195, 352, 386
BciT130I CCWGG 2 cut(s) 146, 391
BfuAI ACCTGC 1 cut(s) 292
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 2 cut(s) 146, 391
BmeT110I CYCGRG 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 161
BmrFI CCNGG 2 cut(s) 146, 391
BsaAI YACGTR 1 cut(s) 326
BsaJI CCNNGG 2 cut(s) 389, 390
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse118I RCCGGY 1 cut(s) 191
BseBI CCWGG 2 cut(s) 146, 391
BseDI CCNNGG 2 cut(s) 389, 390
BseLI CCNNNNNNNGG 1 cut(s) 345
BshFI GGCC 2 cut(s) 163, 291
BsiHKAI GWGCWC 2 cut(s) 115, 191
BsiHKCI CYCGRG 1 cut(s) 114
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 345
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 2 cut(s) 163, 291
BsoBI CYCGRG 1 cut(s) 114
Bsp1286I GDGCHC 2 cut(s) 115, 191
Bsp143I GATC 1 cut(s) 385
BspACI CCGC 1 cut(s) 120
BspANI GGCC 2 cut(s) 163, 291
BspMI ACCTGC 1 cut(s) 292
BspPI GGATC 1 cut(s) 380
BsrFI RCCGGY 1 cut(s) 191
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 389, 390
BssMI GATC 1 cut(s) 385
Bst2UI CCWGG 2 cut(s) 146, 391
Bst4CI ACNGT 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 326
BstDEI CTNAG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 1 cut(s) 388
BstMBI GATC 1 cut(s) 385
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 2 cut(s) 146, 391
BstNSI RCATGY 1 cut(s) 270
BstSCI CCNGG 2 cut(s) 144, 389
BsuRI GGCC 2 cut(s) 163, 291
BtsIMutI CAGTG 1 cut(s) 115
BveI ACCTGC 1 cut(s) 292
CfoI GCGC 1 cut(s) 315
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 161
CsiI ACCWGGT 1 cut(s) 144
CspCI CAANNNNNGTGG 2 cut(s) 268, 303
CviAII CATG 2 cut(s) 68, 267
CviJI RGCY 5 cut(s) 44, 119, 163, 291, 415
CviKI_1 RGCY 5 cut(s) 44, 119, 163, 291, 415
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 387
DpnII GATC 1 cut(s) 385
EaeI YGGCCR 1 cut(s) 289
Eco72I CACGTG 1 cut(s) 326
Eco88I CYCGRG 1 cut(s) 114
EcoRII CCWGG 2 cut(s) 144, 389
FaeI CATG 2 cut(s) 71, 270
FaiI YATR 7 cut(s) 69, 129, 249, 268, 297, 299, 384
FatI CATG 2 cut(s) 67, 266
Fnu4HI GCNGC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 120
GlaI GCGC 1 cut(s) 314
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 2 cut(s) 163, 291
HapII CCGG 1 cut(s) 192
HhaI GCGC 1 cut(s) 315
Hin1II CATG 2 cut(s) 71, 270
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HpaII CCGG 1 cut(s) 192
HphI GGTGA 2 cut(s) 72, 146
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 411
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 2 cut(s) 55, 232
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 7 cut(s) 71, 141, 151, 182, 301, 351, 378
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 2 cut(s) 71, 270
HspAI GCGC 1 cut(s) 313
Kzo9I GATC 1 cut(s) 385
LpnPI CCDG 9 cut(s) 131, 141, 158, 189, 205, 261, 287, 376, 403
MabI ACCWGGT 1 cut(s) 144
MaeII ACGT 1 cut(s) 325
MalI GATC 1 cut(s) 387
MboI GATC 1 cut(s) 385
MhlI GDGCHC 2 cut(s) 115, 191
MlsI TGGCCA 1 cut(s) 291
MluCI AATT 2 cut(s) 5, 379
MluNI TGGCCA 1 cut(s) 291
MnlI CCTC 6 cut(s) 38, 47, 104, 133, 339, 353
Mox20I TGGCCA 1 cut(s) 291
MscI TGGCCA 1 cut(s) 291
MslI CAYNNNNRTG 3 cut(s) 108, 132, 156
Msp20I TGGCCA 1 cut(s) 291
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 146, 391
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 2 cut(s) 146, 391
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 1 cut(s) 385
NlaIII CATG 2 cut(s) 71, 270
NspI RCATGY 1 cut(s) 270
OliI CACNNNNGTG 1 cut(s) 108
PaeR7I CTCGAG 1 cut(s) 114
PasI CCCWGGG 1 cut(s) 390
PciI ACATGT 1 cut(s) 266
PctI GAATGC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 121
PmaCI CACGTG 1 cut(s) 326
PmlI CACGTG 1 cut(s) 326
Ppu21I YACGTR 1 cut(s) 326
PscI ACATGT 1 cut(s) 266
Psp6I CCWGG 2 cut(s) 144, 389
PspCI CACGTG 1 cut(s) 326
PspGI CCWGG 2 cut(s) 144, 389
PspPI GGNCC 1 cut(s) 161
PspXI VCTCGAGB 1 cut(s) 114
RseI CAYNNNNRTG 3 cut(s) 108, 132, 156
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 385
Sau96I GGNCC 1 cut(s) 161
ScrFI CCNGG 2 cut(s) 146, 391
SduI GDGCHC 2 cut(s) 115, 191
SetI ASST 7 cut(s) 96, 147, 180, 285, 306, 328, 350
SexAI ACCWGGT 1 cut(s) 144
Sfr274I CTCGAG 1 cut(s) 114
SgrAI CRCCGGYG 1 cut(s) 191
SlaI CTCGAG 1 cut(s) 114
SmiMI CAYNNNNRTG 3 cut(s) 108, 132, 156
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 2 cut(s) 5, 379
SsiI CCGC 1 cut(s) 120
StyD4I CCNGG 2 cut(s) 144, 389
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 1 cut(s) 328
TaqI TCGA 2 cut(s) 115, 320
TasI AATT 2 cut(s) 5, 379
TauI GCSGC 1 cut(s) 122
TscAI CASTG 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 9, 358
TspRI CASTG 1 cut(s) 115
XceI RCATGY 1 cut(s) 270
XhoI CTCGAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.