Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001302

Physical Location & Seq

Genomic Coordinates Reverse (-)

22548114 .. 22548695

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1109700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAAAATACAATCCCCTTTCTCCTTTTTTTCATTATAACTACTACATGCTACACTTTCTCATTTCAAATATTTGCAGTGTTAGTAGAAACCAATATTACGGGGTTGTGGAAGACTTCATTTGCCTTGGTTTGTCTCATAAGCATAACCCTACTCCCATCCTCTCATGCCCAAGACTCACCACAAGACTACCTCAATGCCCACAACGCCGCTCGAGCGCAGGTGGGCGTTGCTCCCTTGTCATGGGATACTAACTTAGCCAATTATGCACAAAGATACGCTAACTCCCGCATCGGTGACTGCAATCTTGTTCATTTTGGTGGGCCCTACAACGAAAACATAGCAAAGAGCACCGGTGACCTGTCGGGCACTGCAGCCGTGAACTTGTTTGTGAGTGAAAAAGCTGACTATAATTACAACTCTAACACCTGTGCTGCTGGGAAGGTGTGTGGGCATTATACTCAGGTTGTTTGGCGCAGTTCAACCCGTCTAGGGTGCGCGAAAGTGTGGTGCAACAATGGAGGCACCTTCATTGGGTGCAACTATGATCCCCGGGGCAACTACGCTGGGCAGAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

194

Amino Acids

21.08

Weight (kDa)

6.39

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP	PF00188	65 - 182	5.3e-18	Cysteine-rich secretory protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14580 AT2G14610 AT3G19690 AT4G33720 AT4G33730
fragaria_vesca	FvH4_2g02860 FvH4_2g02912
malus_domestica	MD05G1108800.v1.1 MD05G1109100.v1.1 MD05G1109700.v1.1 MD05G1110000.v1.1
prunus_persica	Prupe.8G102800_v2.0.a1 Prupe.8G152900_v2.0.a1 Prupe.8G153100_v2.0.a1 Prupe.8G153200_v2.0.a1 Prupe.8G153500_v2.0.a1 Prupe.8G153700_v2.0.a1 Prupe.8G153800_v2.0.a1
pyrus_communis	pycom05g10520
rosa_chinensis	RchiOBHm_Chr6g0247671 RchiOBHm_Chr6g0247681 RchiOBHm_Chr6g0264301
rosa_laevigata	RLG00000014266 RLG00000014268 RLG00000014270 RLG00000015186 RLG00000015187 RLG00000036357 RLG00000036358 RLG00000036359 RLG00000036360
rosa_multiflora	Rmu_co8203636.1_g000001 Rmu_sc0000147.1_g000017 Rmu_sc0000147.1_g000029 Rmu_sc0003092.1_g000033 Rmu_sc0013122.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431690 Rroxscaffold_7G00213790 Rroxscaffold_7G00213800
rosa_rugosa	Rorug05G0527800 Rorug05G0527900 Rorug06G0011700
rosa_samantha	Rh6AG042300 Rh6AG131500 Rh6BG037200 Rh6BG128300 Rh6CG036300 Rh6CG036500 Rh6CG126700 Rh6DG033300 Rh6DG033500 Rh6DG113800
rosa_wichuraiana	Rw6G003660 Rw6G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	38
AarI	CACCTGC	1 cut(s)	211
Acc36I	ACCTGC	1 cut(s)	211
AccB1I	GGYRCC	1 cut(s)	524
AccBSI	CCGCTC	1 cut(s)	212
AccII	CGCG	1 cut(s)	500
AciI	CCGC	2 cut(s)	210, 289
AclWI	GGATC	1 cut(s)	542
AfiI	CCNNNNNNNGG	3 cut(s)	243, 492, 534
AgeI	ACCGGT	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	68, 483
AluBI	AGCT	1 cut(s)	404
AluI	AGCT	1 cut(s)	404
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	542
Ama87I	CYCGRG	2 cut(s)	213, 552
AoxI	GGCC	1 cut(s)	323
ApaI	GGGCCC	1 cut(s)	327
ApeKI	GCWGC	2 cut(s)	374, 434
AsiGI	ACCGGT	1 cut(s)	353
AspLEI	GCGC	3 cut(s)	220, 477, 500
AspS9I	GGNCC	2 cut(s)	323, 324
AsuC2I	CCSGG	2 cut(s)	553, 554
AsuHPI	GGTGA	3 cut(s)	171, 308, 368
AvaI	CYCGRG	2 cut(s)	213, 552
BaeGI	GKGCMC	2 cut(s)	327, 371
BanI	GGYRCC	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	2 cut(s)	386, 421
BccI	CCATC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	362
BciVI	GTATCC	1 cut(s)	241
BcnI	CCSGG	2 cut(s)	553, 554
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	491
BfmI	CTRYAG	1 cut(s)	372
BfuAI	ACCTGC	1 cut(s)	211
BfuI	GTATCC	1 cut(s)	241
BisI	GCNGC	3 cut(s)	210, 375, 435
BlsI	GCNGC	3 cut(s)	211, 376, 436
Bme1390I	CCNGG	2 cut(s)	553, 554
BmeT110I	CYCGRG	2 cut(s)	213, 552
BmgT120I	GGNCC	2 cut(s)	323, 324
BmiI	GGNNCC	2 cut(s)	325, 526
BmrFI	CCNGG	2 cut(s)	553, 554
BmsI	GCATC	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	119
BpuMI	CCSGG	2 cut(s)	553, 554
BsaJI	CCNNGG	4 cut(s)	126, 551, 552, 553
BsaWI	WCCGGW	1 cut(s)	353
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	3 cut(s)	243, 492, 534
Bse118I	RCCGGY	1 cut(s)	353
BseDI	CCNNGG	4 cut(s)	126, 551, 552, 553
BseGI	GGATG	1 cut(s)	158
BseLI	CCNNNNNNNGG	3 cut(s)	243, 492, 534
BseMII	CTCAG	1 cut(s)	476
BseSI	GKGCMC	2 cut(s)	327, 371
BseXI	GCAGC	2 cut(s)	386, 421
BseYI	CCCAGC	2 cut(s)	437, 566
Bsh1236I	CGCG	1 cut(s)	500
BshFI	GGCC	1 cut(s)	325
BshNI	GGYRCC	1 cut(s)	524
BshTI	ACCGGT	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	353
BsiHKCI	CYCGRG	2 cut(s)	213, 552
BsiSI	CCGG	2 cut(s)	354, 553
BslI	CCNNNNNNNGG	3 cut(s)	243, 492, 534
BsmAI	GTCTC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	325
BsoBI	CYCGRG	2 cut(s)	213, 552
Bsp120I	GGGCCC	1 cut(s)	323
Bsp1286I	GDGCHC	3 cut(s)	327, 353, 371
Bsp143I	GATC	1 cut(s)	547
BspACI	CCGC	2 cut(s)	210, 289
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	1 cut(s)	475
BspFNI	CGCG	1 cut(s)	500
BspLI	GGNNCC	2 cut(s)	325, 526
BspMAI	CTGCAG	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	1 cut(s)	542
BspT107I	GGYRCC	1 cut(s)	524
BsrBI	CCGCTC	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	4 cut(s)	126, 551, 552, 553
BssMI	GATC	1 cut(s)	547
BssT1I	CCWWGG	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	256, 462
BstEII	GGTNACC	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	158
BstFNI	CGCG	1 cut(s)	500
BstHHI	GCGC	3 cut(s)	220, 477, 500
BstKTI	GATC	1 cut(s)	550
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	547
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 215, 266
BstNSI	RCATGY	1 cut(s)	51
BstPI	GGTNACC	1 cut(s)	356
BstSCI	CCNGG	2 cut(s)	551, 552
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	2 cut(s)	327, 371
BstUI	CGCG	1 cut(s)	500
BstV1I	GCAGC	2 cut(s)	386, 421
BstV2I	GAAGAC	1 cut(s)	119
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	158
BtsI	GCAGTG	2 cut(s)	84, 369
BtsIMutI	CAGTG	2 cut(s)	84, 369
BveI	ACCTGC	1 cut(s)	211
CfoI	GCGC	3 cut(s)	220, 477, 500
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	2 cut(s)	323, 324
Cfr9I	CCCGGG	1 cut(s)	552
CspAI	ACCGGT	1 cut(s)	353
CviAII	CATG	3 cut(s)	48, 167, 243
CviJI	RGCY	4 cut(s)	260, 325, 377, 404
CviKI_1	RGCY	4 cut(s)	260, 325, 377, 404
DdeI	CTNAG	2 cut(s)	256, 462
DpnI	GATC	1 cut(s)	549
DpnII	GATC	1 cut(s)	547
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	327
Eco88I	CYCGRG	2 cut(s)	213, 552
Eco91I	GGTNACC	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	324
EcoO65I	GGTNACC	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	3 cut(s)	51, 170, 246
FatI	CATG	3 cut(s)	47, 166, 242
FauI	CCCGC	1 cut(s)	296
Fnu4HI	GCNGC	3 cut(s)	210, 375, 435
FokI	GGATG	1 cut(s)	145
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	3 cut(s)	210, 375, 435
FspBI	CTAG	1 cut(s)	491
GlaI	GCGC	3 cut(s)	219, 476, 499
GluI	GCNGC	3 cut(s)	210, 375, 435
GsaI	CCCAGC	2 cut(s)	441, 570
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	2 cut(s)	354, 553
HhaI	GCGC	3 cut(s)	220, 477, 500
Hin1II	CATG	3 cut(s)	51, 170, 246
Hin6I	GCGC	3 cut(s)	218, 475, 498
HinP1I	GCGC	3 cut(s)	218, 475, 498
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	2 cut(s)	354, 553
HphI	GGTGA	3 cut(s)	171, 308, 368
Hpy166II	GTNNAC	1 cut(s)	382
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	2 cut(s)	436, 538
HpyCH4V	TGCA	6 cut(s)	77, 269, 303, 374, 513, 540
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 215, 266
HpyF3I	CTNAG	2 cut(s)	256, 462
Hsp92II	CATG	3 cut(s)	51, 170, 246
HspAI	GCGC	3 cut(s)	218, 475, 498
Kzo9I	GATC	1 cut(s)	547
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	8 cut(s)	206, 367, 374, 423, 442, 449, 552, 566
Lsp1109I	GCAGC	2 cut(s)	386, 421
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	1 cut(s)	491
MaeIII	GTNAC	2 cut(s)	296, 356
MalI	GATC	1 cut(s)	549
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	1 cut(s)	547
MboII	GAAGA	1 cut(s)	124
MhlI	GDGCHC	3 cut(s)	327, 353, 371
MluCI	AATT	2 cut(s)	262, 412
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	3 cut(s)	172, 203, 515
MslI	CAYNNNNRTG	1 cut(s)	318
MspI	CCGG	2 cut(s)	354, 553
MspR9I	CCNGG	2 cut(s)	553, 554
MvnI	CGCG	1 cut(s)	500
MwoI	GCNNNNNNNGC	3 cut(s)	206, 215, 266
NciI	CCSGG	2 cut(s)	553, 554
NdeII	GATC	1 cut(s)	547
NlaIII	CATG	3 cut(s)	51, 170, 246
NlaIV	GGNNCC	2 cut(s)	325, 526
NmuCI	GTSAC	2 cut(s)	296, 356
NspI	RCATGY	1 cut(s)	51
PaeR7I	CTCGAG	1 cut(s)	213
PaqCI	CACCTGC	1 cut(s)	211
PinAI	ACCGGT	1 cut(s)	353
PkrI	GCNGC	3 cut(s)	211, 376, 436
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PsiI	TTATAA	1 cut(s)	38
PspEI	GGTNACC	1 cut(s)	356
PspFI	CCCAGC	2 cut(s)	437, 566
PspN4I	GGNNCC	2 cut(s)	325, 526
PspOMI	GGGCCC	1 cut(s)	323
PspPI	GGNCC	2 cut(s)	323, 324
PspXI	VCTCGAGB	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	318
SatI	GCNGC	3 cut(s)	210, 375, 435
Sau3AI	GATC	1 cut(s)	547
Sau96I	GGNCC	2 cut(s)	323, 324
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	553, 554
SduI	GDGCHC	3 cut(s)	327, 353, 371
SetI	ASST	8 cut(s)	195, 225, 363, 406, 431, 447, 468, 530
SfaNI	GCATC	1 cut(s)	300
SfcI	CTRYAG	1 cut(s)	372
Sfr274I	CTCGAG	1 cut(s)	213
SgrAI	CRCCGGYG	1 cut(s)	353
SlaI	CTCGAG	1 cut(s)	213
SmaI	CCCGGG	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	2 cut(s)	262, 412
SsiI	CCGC	2 cut(s)	210, 289
SspI	AATATT	2 cut(s)	72, 97
SspMI	CTAG	1 cut(s)	491
StyD4I	CCNGG	2 cut(s)	551, 552
StyI	CCWWGG	1 cut(s)	126
TaqI	TCGA	1 cut(s)	214
TasI	AATT	2 cut(s)	262, 412
TauI	GCSGC	1 cut(s)	212
TscAI	CASTG	2 cut(s)	84, 376
TseFI	GTSAC	2 cut(s)	296, 356
TseI	GCWGC	2 cut(s)	374, 434
Tsp45I	GTSAC	2 cut(s)	296, 356
TspDTI	ATGAA	4 cut(s)	22, 108, 302, 520
TspMI	CCCGGG	1 cut(s)	552
TspRI	CASTG	2 cut(s)	84, 376
XceI	RCATGY	1 cut(s)	51
XhoI	CTCGAG	1 cut(s)	213
XmaI	CCCGGG	1 cut(s)	552
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.