Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001302

Physical Location & Seq

Genomic Coordinates Reverse (-)

16598130 .. 16598771

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G153800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGGCTGTCCACAATTTTACTAGCCCTCGTTTGTGTTTTAGGCTCTGCCCTTCTCCAATCCACTCATGCCCAAGACGCACCGCAAGACTACCTCACTGCCCACAACATCGCTCGAGCAGCGGTTAACGTCGAGCCATTGTCATGGGATGAGAAGCTGCAAGCCTATGCGCAAGACTATGCCAATCAACACATGGGCGACTGCAATCTTGTCCACTCTGGTGGGCCCTACGGCGAAAACCTTGCCATGAGCACCGCTGACTTGTCGGGCACGGATGCCGTGAACATGTGGGTGGCGGAGAAGGCCGACTATAACTACGACTCTAACACTTGTGCCGATGACAAGGTGTGTGGGCATTATACGCAGGTTGTTTGGCGTAACACAGCTCGTGTAGGGTGTGCAAAAGTGAGGTGCAACAGTGGAGGTACCTTCATCGGGTGCAACTATGATCCGCCAGGCAACTATGTTGGGGAGAAGCCTTACGAGCCTTACAACTCCTATGCAAAAATTCTACCATGTGCCAGGTGCATGGATGCGCCAATAATATTCACCATTGGCAATAATGTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

191

Amino Acids

20.6

Weight (kDa)

4.83

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14580 AT2G14610 AT3G19690 AT4G33720 AT4G33730
fragaria_vesca	FvH4_2g02860 FvH4_2g02912
malus_domestica	MD05G1108800.v1.1 MD05G1109100.v1.1 MD05G1109700.v1.1 MD05G1110000.v1.1
prunus_persica	Prupe.8G102800_v2.0.a1 Prupe.8G152900_v2.0.a1 Prupe.8G153100_v2.0.a1 Prupe.8G153200_v2.0.a1 Prupe.8G153500_v2.0.a1 Prupe.8G153700_v2.0.a1 Prupe.8G153800_v2.0.a1
pyrus_communis	pycom05g10520
rosa_chinensis	RchiOBHm_Chr6g0247671 RchiOBHm_Chr6g0247681 RchiOBHm_Chr6g0264301
rosa_laevigata	RLG00000014266 RLG00000014268 RLG00000014270 RLG00000015186 RLG00000015187 RLG00000036357 RLG00000036358 RLG00000036359 RLG00000036360
rosa_multiflora	Rmu_co8203636.1_g000001 Rmu_sc0000147.1_g000017 Rmu_sc0000147.1_g000029 Rmu_sc0003092.1_g000033 Rmu_sc0013122.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431690 Rroxscaffold_7G00213790 Rroxscaffold_7G00213800
rosa_rugosa	Rorug05G0527800 Rorug05G0527900 Rorug06G0011700
rosa_samantha	Rh6AG042300 Rh6AG131500 Rh6BG037200 Rh6BG128300 Rh6CG036300 Rh6CG036500 Rh6CG126700 Rh6DG033300 Rh6DG033500 Rh6DG113800
rosa_wichuraiana	Rw6G003660 Rw6G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	171
Acc36I	ACCTGC	1 cut(s)	355
Acc65I	GGTACC	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	425
AciI	CCGC	5 cut(s)	83, 122, 255, 296, 452
AclWI	GGATC	1 cut(s)	443
AcsI	RAATTY	1 cut(s)	507
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	1 cut(s)	435
AflIII	ACRYGT	1 cut(s)	285
AjnI	CCWGG	2 cut(s)	454, 521
AleI	CACNNNNGTG	1 cut(s)	219
AluBI	AGCT	2 cut(s)	157, 386
AluI	AGCT	2 cut(s)	157, 386
Alw21I	GWGCWC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	2 cut(s)	224, 303
ApaI	GGGCCC	1 cut(s)	228
ApeKI	GCWGC	2 cut(s)	119, 157
ApoI	RAATTY	1 cut(s)	507
Asp718I	GGTACC	1 cut(s)	425
AspLEI	GCGC	2 cut(s)	172, 538
AspS9I	GGNCC	2 cut(s)	224, 225
AsuHPI	GGTGA	1 cut(s)	541
AvaI	CYCGRG	1 cut(s)	114
BaeGI	GKGCMC	2 cut(s)	228, 272
BanI	GGYRCC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	228
BauI	CACGAG	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	131, 144
BceAI	ACGGC	2 cut(s)	247, 263
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	2 cut(s)	456, 523
BfaI	CTAG	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	355
BisI	GCNGC	2 cut(s)	120, 158
BlsI	GCNGC	2 cut(s)	121, 159
Bme1390I	CCNGG	2 cut(s)	456, 523
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	2 cut(s)	224, 225
BmiI	GGNNCC	2 cut(s)	226, 427
BmrFI	CCNGG	2 cut(s)	456, 523
BmsI	GCATC	2 cut(s)	265, 523
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
BseBI	CCWGG	2 cut(s)	456, 523
BseGI	GGATG	3 cut(s)	154, 280, 538
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseSI	GKGCMC	2 cut(s)	228, 272
BseXI	GCAGC	2 cut(s)	131, 144
BshFI	GGCC	2 cut(s)	226, 305
BshNI	GGYRCC	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	435
BsnI	GGCC	2 cut(s)	226, 305
BsoBI	CYCGRG	1 cut(s)	114
Bsp120I	GGGCCC	1 cut(s)	224
Bsp1286I	GDGCHC	3 cut(s)	228, 254, 272
Bsp143I	GATC	1 cut(s)	448
BspACI	CCGC	5 cut(s)	83, 122, 255, 296, 452
BspANI	GGCC	2 cut(s)	226, 305
BspLI	GGNNCC	2 cut(s)	226, 427
BspMI	ACCTGC	1 cut(s)	355
BspPI	GGATC	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	425
BssMI	GATC	1 cut(s)	448
BssSI	CACGAG	1 cut(s)	387
Bst2BI	CACGAG	1 cut(s)	387
Bst2UI	CCWGG	2 cut(s)	456, 523
Bst4CI	ACNGT	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	162
BstF5I	GGATG	3 cut(s)	154, 280, 538
BstHHI	GCGC	2 cut(s)	172, 538
BstKTI	GATC	1 cut(s)	451
BstMBI	GATC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 119, 302, 361, 484
BstNI	CCWGG	2 cut(s)	456, 523
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	454, 521
BstSLI	GKGCMC	2 cut(s)	228, 272
BstV1I	GCAGC	2 cut(s)	131, 144
BstXI	CCANNNNNNTGG	3 cut(s)	144, 221, 529
BsuRI	GGCC	2 cut(s)	226, 305
BtgZI	GCGATG	1 cut(s)	94
BtsCI	GGATG	3 cut(s)	154, 280, 538
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	96, 424
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	162
CfoI	GCGC	2 cut(s)	172, 538
Cfr13I	GGNCC	2 cut(s)	224, 225
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	426
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	7 cut(s)	68, 144, 193, 247, 286, 516, 529
CviQI	GTAC	1 cut(s)	426
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
EciI	GGCGGA	2 cut(s)	311, 441
Eco24I	GRGCYC	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	454, 521
EcoT38I	GRGCYC	1 cut(s)	228
FaeI	CATG	7 cut(s)	71, 147, 196, 250, 289, 519, 532
FatI	CATG	7 cut(s)	67, 143, 192, 246, 285, 515, 528
Fnu4HI	GCNGC	2 cut(s)	120, 158
FokI	GGATG	3 cut(s)	161, 287, 545
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	120, 158
FspBI	CTAG	1 cut(s)	23
FspI	TGCGCA	1 cut(s)	171
GlaI	GCGC	2 cut(s)	171, 537
GluI	GCNGC	2 cut(s)	120, 158
HaeIII	GGCC	2 cut(s)	226, 305
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	2 cut(s)	172, 538
Hin1II	CATG	7 cut(s)	71, 147, 196, 250, 289, 519, 532
Hin6I	GCGC	2 cut(s)	170, 536
HinP1I	GCGC	2 cut(s)	170, 536
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	320
HpaI	GTTAAC	1 cut(s)	127
HphI	GGTGA	1 cut(s)	541
Hpy166II	GTNNAC	4 cut(s)	12, 127, 214, 283
Hpy8I	GTNNAC	4 cut(s)	12, 127, 214, 283
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	3 cut(s)	62, 295, 439
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	7 cut(s)	160, 204, 401, 414, 441, 503, 528
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 119, 302, 361, 484
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	7 cut(s)	71, 147, 196, 250, 289, 519, 532
HspAI	GCGC	2 cut(s)	170, 536
KpnI	GGTACC	1 cut(s)	429
KspAI	GTTAAC	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	448
LpnPI	CCDG	6 cut(s)	204, 350, 441, 468, 508, 535
Lsp1109I	GCAGC	2 cut(s)	131, 144
LweI	GCATC	2 cut(s)	265, 523
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MhlI	GDGCHC	3 cut(s)	228, 254, 272
MluCI	AATT	2 cut(s)	15, 507
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	4 cut(s)	38, 104, 402, 416
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	3 cut(s)	142, 219, 290
MspA1I	CMGCKG	2 cut(s)	122, 257
MspR9I	CCNGG	2 cut(s)	456, 523
MvaI	CCWGG	2 cut(s)	456, 523
MwoI	GCNNNNNNNGC	5 cut(s)	77, 119, 302, 361, 484
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	7 cut(s)	71, 147, 196, 250, 289, 519, 532
NlaIV	GGNNCC	2 cut(s)	226, 427
NsbI	TGCGCA	1 cut(s)	171
NspI	RCATGY	1 cut(s)	289
OliI	CACNNNNGTG	1 cut(s)	219
PaeR7I	CTCGAG	1 cut(s)	114
PciI	ACATGT	1 cut(s)	285
PkrI	GCNGC	2 cut(s)	121, 159
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PscI	ACATGT	1 cut(s)	285
Psp6I	CCWGG	2 cut(s)	454, 521
PspGI	CCWGG	2 cut(s)	454, 521
PspN4I	GGNNCC	2 cut(s)	226, 427
PspOMI	GGGCCC	1 cut(s)	224
PspPI	GGNCC	2 cut(s)	224, 225
PspXI	VCTCGAGB	1 cut(s)	114
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
RseI	CAYNNNNRTG	3 cut(s)	142, 219, 290
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	2 cut(s)	120, 158
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	2 cut(s)	224, 225
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	2 cut(s)	456, 523
SduI	GDGCHC	3 cut(s)	228, 254, 272
SfaNI	GCATC	2 cut(s)	265, 523
Sfr274I	CTCGAG	1 cut(s)	114
SlaI	CTCGAG	1 cut(s)	114
SmiMI	CAYNNNNRTG	3 cut(s)	142, 219, 290
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	2 cut(s)	15, 507
SsiI	CCGC	5 cut(s)	83, 122, 255, 296, 452
SspI	AATATT	1 cut(s)	546
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	454, 521
TaaI	ACNGT	1 cut(s)	419
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	115, 132
TasI	AATT	2 cut(s)	15, 507
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	2 cut(s)	103, 424
TseI	GCWGC	2 cut(s)	119, 157
TspDTI	ATGAA	1 cut(s)	421
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	2 cut(s)	103, 424
XapI	RAATTY	1 cut(s)	507
XceI	RCATGY	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XhoI	CTCGAG	1 cut(s)	114
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.