Prupe.8G153500_v2.0.a1

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0001302
Physical Location & Seq
Reverse (-)
16583808 .. 16584531
724 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G153500.1

Sequence Viewer

Length: 486 bp
ATGGGGTTGTCTAAGATTTCCTTTGCCTTCGTATGTCTCATAGGCTTAGCCCTGCTCCAATCCACTGGTGCCCAAGACTCACCACAAGACTACCTCAATGCCCACAACGCCGCTCGAGCCCAGGTAGGTGTTGCTCCCTTGACCTGGGACCCCAACCTAGTAGCCTATGCCCAAAGATATGCAAACTCCCGTGCTGGTGATTGCAATCTAGTGCACTCTAATGGGCCTTATGGTGAAAACATAGCGAAGAGCACCGGTGACTTGTCTGGCACAGCTGCCGTGAACTTGTTCGTAGGGGAGAAGCCCGACTATGACTACAACTCTAACACCTGTGCTGCTGGGAAGATGTGTGGTCATTACACGCAGGTGGTTTGGCGCAACTCAGTTCGTTTAGGGTGTGCAAAAGCGCGATGCACCAATGGAGGCACGTTTATTGGGTGCAACTATGATCCCCGGGGAAACATTCGTGGGCAGAGGCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

162

Amino Acids

17.22

Weight (kDa)

8.7

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 355
Acc36I ACCTGC 1 cut(s) 355
AccB1I GGYRCC 1 cut(s) 68
AccBSI CCGCTC 1 cut(s) 113
AccII CGCG 1 cut(s) 409
AciI CCGC 1 cut(s) 111
AclWI GGATC 1 cut(s) 443
AfiI CCNNNNNNNGG 1 cut(s) 144
AgeI ACCGGT 1 cut(s) 254
AjnI CCWGG 2 cut(s) 120, 143
AleI CACNNNNGTG 1 cut(s) 365
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw21I GWGCWC 2 cut(s) 216, 254
Alw26I GTCTC 1 cut(s) 41
Alw44I GTGCAC 1 cut(s) 212
AlwI GGATC 1 cut(s) 443
Ama87I CYCGRG 2 cut(s) 114, 453
AoxI GGCC 2 cut(s) 224, 476
ApaLI GTGCAC 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 275, 335
AsiGI ACCGGT 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 287
AspLEI GCGC 2 cut(s) 378, 409
AspS9I GGNCC 2 cut(s) 148, 224
AsuC2I CCSGG 2 cut(s) 454, 455
AsuHPI GGTGA 4 cut(s) 72, 209, 245, 269
AvaI CYCGRG 2 cut(s) 114, 453
AvaII GGWCC 1 cut(s) 148
BaeGI GKGCMC 2 cut(s) 73, 216
BanI GGYRCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 2 cut(s) 216, 254
BbvI GCAGC 2 cut(s) 262, 322
BceAI ACGGC 1 cut(s) 263
BciT130I CCWGG 2 cut(s) 122, 145
BcnI CCSGG 2 cut(s) 454, 455
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 2 cut(s) 158, 209
BfuAI ACCTGC 1 cut(s) 355
BisI GCNGC 3 cut(s) 111, 276, 336
BlpI GCTNAGC 1 cut(s) 46
BlsI GCNGC 3 cut(s) 112, 277, 337
Bme1390I CCNGG 4 cut(s) 122, 145, 454, 455
Bme18I GGWCC 1 cut(s) 148
BmeT110I CYCGRG 2 cut(s) 114, 453
BmgT120I GGNCC 2 cut(s) 148, 224
BmiI GGNNCC 3 cut(s) 70, 149, 150
BmrFI CCNGG 4 cut(s) 122, 145, 454, 455
BmsI GCATC 1 cut(s) 401
Bpu1102I GCTNAGC 1 cut(s) 46
BpuMI CCSGG 2 cut(s) 454, 455
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 5 cut(s) 120, 144, 452, 453, 454
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 70
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 2 cut(s) 122, 145
BseDI CCNNGG 5 cut(s) 120, 144, 452, 453, 454
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 70
BseSI GKGCMC 2 cut(s) 73, 216
BseXI GCAGC 2 cut(s) 262, 322
BseYI CCCAGC 1 cut(s) 338
Bsh1236I CGCG 1 cut(s) 409
BshFI GGCC 2 cut(s) 226, 478
BshNI GGYRCC 1 cut(s) 68
BshTI ACCGGT 1 cut(s) 254
BsiHKAI GWGCWC 2 cut(s) 216, 254
BsiHKCI CYCGRG 2 cut(s) 114, 453
BsiSI CCGG 2 cut(s) 255, 454
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 2 cut(s) 226, 478
BsoBI CYCGRG 2 cut(s) 114, 453
Bsp1286I GDGCHC 4 cut(s) 73, 121, 216, 254
Bsp143I GATC 1 cut(s) 448
Bsp1720I GCTNAGC 1 cut(s) 46
BspACI CCGC 1 cut(s) 111
BspANI GGCC 2 cut(s) 226, 478
BspCNI CTCAG 1 cut(s) 395
BspFNI CGCG 1 cut(s) 409
BspLI GGNNCC 3 cut(s) 70, 149, 150
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 1 cut(s) 443
BspQI GCTCTTC 1 cut(s) 242
BspT107I GGYRCC 1 cut(s) 68
BsrBI CCGCTC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 5 cut(s) 120, 144, 452, 453, 454
BssMI GATC 1 cut(s) 448
Bst2UI CCWGG 2 cut(s) 122, 145
Bst6I CTCTTC 1 cut(s) 242
BstDEI CTNAG 3 cut(s) 12, 46, 382
BstFNI CGCG 1 cut(s) 409
BstHHI GCGC 2 cut(s) 378, 409
BstKTI GATC 1 cut(s) 451
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 2 cut(s) 107, 116
BstNI CCWGG 2 cut(s) 122, 145
BstSCI CCNGG 4 cut(s) 120, 143, 452, 453
BstSLI GKGCMC 2 cut(s) 73, 216
BstUI CGCG 1 cut(s) 409
BstV1I GCAGC 2 cut(s) 262, 322
BstXI CCANNNNNNTGG 1 cut(s) 65
BsuRI GGCC 2 cut(s) 226, 478
BtgZI GCGATG 1 cut(s) 424
BtsIMutI CAGTG 1 cut(s) 63
BveI ACCTGC 1 cut(s) 355
CfoI GCGC 2 cut(s) 378, 409
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 2 cut(s) 148, 224
Cfr9I CCCGGG 1 cut(s) 453
CspAI ACCGGT 1 cut(s) 254
CviJI RGCY 8 cut(s) 45, 50, 119, 164, 226, 275, 304, 478
CviKI_1 RGCY 8 cut(s) 45, 50, 119, 164, 226, 275, 304, 478
DdeI CTNAG 3 cut(s) 12, 46, 382
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
Eco147I AGGCCT 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 148
Eco88I CYCGRG 2 cut(s) 114, 453
EcoO109I RGGNCCY 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 120, 143
EcoT38I GRGCYC 1 cut(s) 121
FaiI YATR 8 cut(s) 34, 41, 168, 180, 231, 242, 312, 447
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 161
Fnu4HI GCNGC 3 cut(s) 111, 276, 336
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 3 cut(s) 111, 276, 336
FspBI CTAG 2 cut(s) 158, 209
GlaI GCGC 2 cut(s) 377, 408
GluI GCNGC 3 cut(s) 111, 276, 336
GsaI CCCAGC 1 cut(s) 342
HaeIII GGCC 2 cut(s) 226, 478
HapII CCGG 2 cut(s) 255, 454
HhaI GCGC 2 cut(s) 378, 409
Hin6I GCGC 2 cut(s) 376, 407
HinP1I GCGC 2 cut(s) 376, 407
HinfI GANTC 1 cut(s) 77
HpaII CCGG 2 cut(s) 255, 454
HphI GGTGA 4 cut(s) 72, 209, 245, 269
Hpy166II GTNNAC 2 cut(s) 214, 283
Hpy8I GTNNAC 2 cut(s) 214, 283
HpyAV CCTTC 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 428
HpyCH4V TGCA 6 cut(s) 182, 204, 214, 401, 414, 441
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 116
HpyF3I CTNAG 3 cut(s) 12, 46, 382
HpySE526I ACGT 1 cut(s) 428
HspAI GCGC 2 cut(s) 376, 407
KflI GGGWCCC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 448
LguI GCTCTTC 1 cut(s) 242
LmnI GCTCC 2 cut(s) 60, 139
Lsp1109I GCAGC 2 cut(s) 262, 322
LweI GCATC 1 cut(s) 401
MaeI CTAG 2 cut(s) 158, 209
MaeII ACGT 1 cut(s) 428
MaeIII GTNAC 1 cut(s) 257
MalI GATC 1 cut(s) 450
MbiI CCGCTC 1 cut(s) 113
MboI GATC 1 cut(s) 448
MboII GAAGA 2 cut(s) 259, 355
MhlI GDGCHC 4 cut(s) 73, 121, 216, 254
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 3 cut(s) 104, 416, 468
MroXI GAANNNNTTC 1 cut(s) 287
MslI CAYNNNNRTG 2 cut(s) 219, 365
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 2 cut(s) 255, 454
MspR9I CCNGG 4 cut(s) 122, 145, 454, 455
MvaI CCWGG 2 cut(s) 122, 145
MvnI CGCG 1 cut(s) 409
MwoI GCNNNNNNNGC 2 cut(s) 107, 116
NciI CCSGG 2 cut(s) 454, 455
NdeII GATC 1 cut(s) 448
NlaIV GGNNCC 3 cut(s) 70, 149, 150
NmuCI GTSAC 1 cut(s) 257
OliI CACNNNNGTG 1 cut(s) 365
PaeR7I CTCGAG 1 cut(s) 114
PaqCI CACCTGC 1 cut(s) 355
PceI AGGCCT 1 cut(s) 478
PciSI GCTCTTC 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 287
PinAI ACCGGT 1 cut(s) 254
PkrI GCNGC 3 cut(s) 112, 277, 337
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PpuMI RGGWCCY 1 cut(s) 148
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 2 cut(s) 120, 143
PspFI CCCAGC 1 cut(s) 338
PspGI CCWGG 2 cut(s) 120, 143
PspN4I GGNNCC 3 cut(s) 70, 149, 150
PspPI GGNCC 2 cut(s) 148, 224
PspPPI RGGWCCY 1 cut(s) 148
PspXI VCTCGAGB 1 cut(s) 114
PvuII CAGCTG 1 cut(s) 275
RseI CAYNNNNRTG 2 cut(s) 219, 365
SapI GCTCTTC 1 cut(s) 242
SatI GCNGC 3 cut(s) 111, 276, 336
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 2 cut(s) 148, 224
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 4 cut(s) 122, 145, 454, 455
SduI GDGCHC 4 cut(s) 73, 121, 216, 254
SetI ASST 9 cut(s) 96, 126, 130, 146, 159, 277, 332, 369, 431
SfaNI GCATC 1 cut(s) 401
Sfr274I CTCGAG 1 cut(s) 114
SgrAI CRCCGGYG 1 cut(s) 254
SinI GGWCC 1 cut(s) 148
SlaI CTCGAG 1 cut(s) 114
SmaI CCCGGG 1 cut(s) 455
SmiMI CAYNNNNRTG 2 cut(s) 219, 365
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
SseBI AGGCCT 1 cut(s) 478
SsiI CCGC 1 cut(s) 111
SspMI CTAG 2 cut(s) 158, 209
StuI AGGCCT 1 cut(s) 478
StyD4I CCNGG 4 cut(s) 120, 143, 452, 453
TaiI ACGT 1 cut(s) 431
TaqI TCGA 1 cut(s) 115
TauI GCSGC 1 cut(s) 113
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 2 cut(s) 275, 335
Tsp45I GTSAC 1 cut(s) 257
TspMI CCCGGG 1 cut(s) 453
TspRI CASTG 1 cut(s) 70
VneI GTGCAC 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 148
XhoI CTCGAG 1 cut(s) 114
XmaI CCCGGG 1 cut(s) 453
XmnI GAANNNNTTC 1 cut(s) 287
XspI CTAG 2 cut(s) 158, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.