Prupe.8G153100_v2.0.a1

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0001302
Physical Location & Seq
Reverse (-)
16569218 .. 16569703
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G153100.1

Sequence Viewer

Length: 486 bp
ATGGGCCTGTCCAAGATTTTACTAGCCCTCGTTTGTGTTTTAGGCTCTGCCCTTCTCCAATCCACTCATGCCCAAGACACACCGCAAGACTACGTCACTGCCCATAACAACGCTCGAGCGGCGGTAAATGTCGGGCCATTGTCATGGGATGAGAAGCTACAAGGCTATGCGCAAGACTATGCCAATCAACACATTGGCGACTGCAATCTTGTCCACTCTGGTGGGCCCTACGGCGAAAACCTTGCCATGAGCACCGCTGACTTGTCGGGCACGGATGCCGTGAACATGTGGGTGGCGGAGAAGGCCGACTATAACTACGACTCTAACACTTGTGCCGATGGCAAGATGTGTGGGCATTATACGCAGGTTGTTTGGCGTAACACAGCTCGTGTAGGGTGTGCAAAAGTGAGGTGCAACAGTGGAGGTACCTTCATCGGGTGTAACTATGATCCGCCAGGCAACTATGTTGGGGAGAAGCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

162

Amino Acids

17.29

Weight (kDa)

5.35

Isoelectric Point (pI)

30.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 171
Acc36I ACCTGC 1 cut(s) 355
Acc65I GGTACC 1 cut(s) 425
AccB1I GGYRCC 1 cut(s) 425
AccBSI CCGCTC 1 cut(s) 119
AciI CCGC 6 cut(s) 83, 119, 122, 255, 296, 452
AclWI GGATC 1 cut(s) 443
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 1 cut(s) 435
AflIII ACRYGT 1 cut(s) 285
AjnI CCWGG 1 cut(s) 454
AleI CACNNNNGTG 1 cut(s) 219
AluBI AGCT 2 cut(s) 157, 386
AluI AGCT 2 cut(s) 157, 386
Alw21I GWGCWC 1 cut(s) 254
AlwI GGATC 1 cut(s) 443
Ama87I CYCGRG 1 cut(s) 114
AoxI GGCC 4 cut(s) 4, 134, 224, 303
ApaI GGGCCC 1 cut(s) 228
Asp718I GGTACC 1 cut(s) 425
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 4 cut(s) 4, 134, 224, 225
AvaI CYCGRG 1 cut(s) 114
BaeGI GKGCMC 2 cut(s) 228, 272
BanI GGYRCC 1 cut(s) 425
BanII GRGCYC 1 cut(s) 228
BauI CACGAG 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 254
BccI CCATC 1 cut(s) 332
BceAI ACGGC 2 cut(s) 247, 263
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 1 cut(s) 456
BfaI CTAG 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 355
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 456
BmeT110I CYCGRG 1 cut(s) 114
BmgT120I GGNCC 4 cut(s) 4, 134, 224, 225
BmiI GGNNCC 2 cut(s) 226, 427
BmrFI CCNGG 1 cut(s) 456
BmsI GCATC 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 435
BseBI CCWGG 1 cut(s) 456
BseGI GGATG 2 cut(s) 154, 280
BseLI CCNNNNNNNGG 1 cut(s) 435
BseSI GKGCMC 2 cut(s) 228, 272
BshFI GGCC 4 cut(s) 6, 136, 226, 305
BshNI GGYRCC 1 cut(s) 425
BsiHKAI GWGCWC 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 435
BsnI GGCC 4 cut(s) 6, 136, 226, 305
BsoBI CYCGRG 1 cut(s) 114
Bsp120I GGGCCC 1 cut(s) 224
Bsp1286I GDGCHC 3 cut(s) 228, 254, 272
Bsp143I GATC 1 cut(s) 448
BspACI CCGC 6 cut(s) 83, 119, 122, 255, 296, 452
BspANI GGCC 4 cut(s) 6, 136, 226, 305
BspLI GGNNCC 2 cut(s) 226, 427
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 1 cut(s) 443
BspT107I GGYRCC 1 cut(s) 425
BsrBI CCGCTC 1 cut(s) 119
BssMI GATC 1 cut(s) 448
BssSI CACGAG 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 387
Bst2UI CCWGG 1 cut(s) 456
Bst4CI ACNGT 1 cut(s) 419
BstF5I GGATG 2 cut(s) 154, 280
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 1 cut(s) 451
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 3 cut(s) 119, 302, 361
BstNI CCWGG 1 cut(s) 456
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 454
BstSLI GKGCMC 2 cut(s) 228, 272
BstXI CCANNNNNNTGG 2 cut(s) 144, 221
BsuRI GGCC 4 cut(s) 6, 136, 226, 305
BtsCI GGATG 2 cut(s) 154, 280
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 96, 424
BveI ACCTGC 1 cut(s) 355
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 4 cut(s) 4, 134, 224, 225
Csp6I GTAC 1 cut(s) 426
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 4 cut(s) 68, 144, 247, 286
CviQI GTAC 1 cut(s) 426
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
EciI GGCGGA 2 cut(s) 311, 441
Eco24I GRGCYC 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 114
EcoO109I RGGNCCY 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 4 cut(s) 71, 147, 250, 289
FatI CATG 4 cut(s) 67, 143, 246, 285
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 161, 287
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 1 cut(s) 23
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 4 cut(s) 6, 136, 226, 305
HhaI GCGC 1 cut(s) 172
Hin1II CATG 4 cut(s) 71, 147, 250, 289
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HinfI GANTC 1 cut(s) 320
Hpy166II GTNNAC 2 cut(s) 214, 283
Hpy8I GTNNAC 2 cut(s) 214, 283
HpyAV CCTTC 3 cut(s) 62, 295, 439
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 3 cut(s) 204, 401, 414
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 302, 361
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 4 cut(s) 71, 147, 250, 289
HspAI GCGC 1 cut(s) 170
KpnI GGTACC 1 cut(s) 429
Kzo9I GATC 1 cut(s) 448
LpnPI CCDG 5 cut(s) 20, 204, 350, 441, 468
LweI GCATC 1 cut(s) 265
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 3 cut(s) 94, 377, 440
MalI GATC 1 cut(s) 450
MbiI CCGCTC 1 cut(s) 119
MboI GATC 1 cut(s) 448
MhlI GDGCHC 3 cut(s) 228, 254, 272
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 3 cut(s) 38, 402, 416
MslI CAYNNNNRTG 3 cut(s) 142, 219, 290
MspA1I CMGCKG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 456
MvaI CCWGG 1 cut(s) 456
MwoI GCNNNNNNNGC 3 cut(s) 119, 302, 361
NdeII GATC 1 cut(s) 448
NlaIII CATG 4 cut(s) 71, 147, 250, 289
NlaIV GGNNCC 2 cut(s) 226, 427
NmuCI GTSAC 1 cut(s) 94
NsbI TGCGCA 1 cut(s) 171
NspI RCATGY 1 cut(s) 289
OliI CACNNNNGTG 1 cut(s) 219
PaeR7I CTCGAG 1 cut(s) 114
PciI ACATGT 1 cut(s) 285
PflFI GACNNNGTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
PscI ACATGT 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 454
PspGI CCWGG 1 cut(s) 454
PspN4I GGNNCC 2 cut(s) 226, 427
PspOMI GGGCCC 1 cut(s) 224
PspPI GGNCC 4 cut(s) 4, 134, 224, 225
PspXI VCTCGAGB 1 cut(s) 114
PsyI GACNNNGTC 1 cut(s) 92
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
RseI CAYNNNNRTG 3 cut(s) 142, 219, 290
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 4 cut(s) 4, 134, 224, 225
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 456
SduI GDGCHC 3 cut(s) 228, 254, 272
SetI ASST 8 cut(s) 96, 159, 243, 369, 388, 413, 427, 431
SfaNI GCATC 1 cut(s) 265
Sfr274I CTCGAG 1 cut(s) 114
SlaI CTCGAG 1 cut(s) 114
SmiMI CAYNNNNRTG 3 cut(s) 142, 219, 290
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
SsiI CCGC 6 cut(s) 83, 119, 122, 255, 296, 452
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 454
TaaI ACNGT 1 cut(s) 419
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 115
TauI GCSGC 1 cut(s) 122
TscAI CASTG 2 cut(s) 103, 424
TseFI GTSAC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 421
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 2 cut(s) 103, 424
Tth111I GACNNNGTC 1 cut(s) 92
XceI RCATGY 1 cut(s) 289
XhoI CTCGAG 1 cut(s) 114
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.