transcription factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| bHLH-MYC_N | PF14215 | 10 - 148 | 4.2e-18 | bHLH-MYC and R2R3-MYB transcription factors N-terminal |
| HLH | PF00010 | 317 - 360 | 2.3e-11 | Helix-loop-helix DNA-binding domain |
| bHLH-TF_ACT-like_plant | PF22754 | 429 - 505 | 6.5e-10 | Plant bHLH transcription factor, ACT-like domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 716, 782 |
| AciI | CCGC | 2 cut(s) | 149, 278 |
| AclI | AACGTT | 1 cut(s) | 1218 |
| AclWI | GGATC | 4 cut(s) | 610, 893, 937, 1144 |
| AcsI | RAATTY | 2 cut(s) | 227, 1252 |
| AcuI | CTGAAG | 1 cut(s) | 438 |
| AcyI | GRCGYC | 1 cut(s) | 1037 |
| AfaI | GTAC | 3 cut(s) | 355, 524, 908 |
| AfeI | AGCGCT | 1 cut(s) | 1666 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 47, 377, 553, 716, 782, 1154, 1432 |
| AflIII | ACRYGT | 3 cut(s) | 409, 459, 1489 |
| AgsI | TTSAA | 4 cut(s) | 667, 1100, 1112, 1450 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1036, 1397 |
| AhlI | ACTAGT | 1 cut(s) | 385 |
| AjiI | CACGTC | 1 cut(s) | 1294 |
| AjnI | CCWGG | 3 cut(s) | 1013, 1348, 1431 |
| AluBI | AGCT | 9 cut(s) | 174, 248, 321, 394, 795, 976, 1096, 1108, 1484 |
| AluI | AGCT | 9 cut(s) | 174, 248, 321, 394, 795, 976, 1096, 1108, 1484 |
| Alw21I | GWGCWC | 2 cut(s) | 323, 396 |
| Alw26I | GTCTC | 6 cut(s) | 76, 275, 647, 952, 1118, 1441 |
| AlwI | GGATC | 4 cut(s) | 610, 893, 937, 1144 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1127 |
| Ama87I | CYCGRG | 1 cut(s) | 1195 |
| Aor51HI | AGCGCT | 1 cut(s) | 1666 |
| AoxI | GGCC | 2 cut(s) | 38, 1145 |
| ApeKI | GCWGC | 1 cut(s) | 873 |
| ApoI | RAATTY | 2 cut(s) | 227, 1252 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 86, 118 |
| AspLEI | GCGC | 1 cut(s) | 1667 |
| AspS9I | GGNCC | 2 cut(s) | 213, 1477 |
| AsuC2I | CCSGG | 5 cut(s) | 268, 378, 1196, 1197, 1519 |
| AsuHPI | GGTGA | 7 cut(s) | 551, 1184, 1342, 1604, 1628, 1640, 1670 |
| AvaI | CYCGRG | 1 cut(s) | 1195 |
| AvaII | GGWCC | 2 cut(s) | 213, 1477 |
| BanII | GRGCYC | 2 cut(s) | 323, 396 |
| BbsI | GAAGAC | 2 cut(s) | 99, 1438 |
| Bbv12I | GWGCWC | 2 cut(s) | 323, 396 |
| BbvCI | CCTCAGC | 1 cut(s) | 1427 |
| BbvI | GCAGC | 1 cut(s) | 885 |
| BceAI | ACGGC | 1 cut(s) | 505 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 587, 621 |
| BciT130I | CCWGG | 3 cut(s) | 1015, 1350, 1433 |
| BclI | TGATCA | 4 cut(s) | 610, 1546, 1609, 1645 |
| BcnI | CCSGG | 5 cut(s) | 268, 378, 1196, 1197, 1519 |
| BcoDI | GTCTC | 6 cut(s) | 76, 275, 647, 952, 1118, 1441 |
| BcuI | ACTAGT | 1 cut(s) | 385 |
| BfaI | CTAG | 6 cut(s) | 357, 386, 792, 1224, 1394, 1530 |
| BfmI | CTRYAG | 1 cut(s) | 1557 |
| BfoI | RGCGCY | 1 cut(s) | 1668 |
| BisI | GCNGC | 1 cut(s) | 874 |
| BlsI | GCNGC | 1 cut(s) | 875 |
| Bme1390I | CCNGG | 8 cut(s) | 268, 378, 1015, 1196, 1197, 1350, 1433, 1519 |
| Bme18I | GGWCC | 2 cut(s) | 213, 1477 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1036, 1397 |
| BmeT110I | CYCGRG | 1 cut(s) | 1195 |
| BmgBI | CACGTC | 1 cut(s) | 1294 |
| BmgT120I | GGNCC | 2 cut(s) | 213, 1477 |
| BmiI | GGNNCC | 2 cut(s) | 559, 1281 |
| BmrFI | CCNGG | 8 cut(s) | 268, 378, 1015, 1196, 1197, 1350, 1433, 1519 |
| BmrI | ACTGGG | 1 cut(s) | 1194 |
| BmsI | GCATC | 2 cut(s) | 1042, 1627 |
| BmuI | ACTGGG | 1 cut(s) | 1194 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1178 |
| BpiI | GAAGAC | 2 cut(s) | 99, 1438 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1427 |
| BpuEI | CTTGAG | 2 cut(s) | 918, 1268 |
| BpuMI | CCSGG | 5 cut(s) | 268, 378, 1196, 1197, 1519 |
| BsaAI | YACGTR | 1 cut(s) | 1492 |
| BsaBI | GATNNNNATC | 2 cut(s) | 684, 1242 |
| BsaHI | GRCGYC | 1 cut(s) | 1037 |
| BsaI | GGTCTC | 1 cut(s) | 1441 |
| BsaJI | CCNNGG | 5 cut(s) | 209, 696, 1013, 1195, 1196 |
| BsaWI | WCCGGW | 2 cut(s) | 536, 999 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 372, 402 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 47, 377, 553, 716, 782, 1154, 1432 |
| Bse1I | ACTGG | 4 cut(s) | 307, 776, 1189, 1383 |
| Bse3DI | GCAATG | 1 cut(s) | 451 |
| Bse8I | GATNNNNATC | 2 cut(s) | 684, 1242 |
| BseBI | CCWGG | 3 cut(s) | 1015, 1350, 1433 |
| BseDI | CCNNGG | 5 cut(s) | 209, 696, 1013, 1195, 1196 |
| BseGI | GGATG | 9 cut(s) | 120, 125, 196, 205, 534, 543, 1138, 1164, 1541 |
| BseJI | GATNNNNATC | 2 cut(s) | 684, 1242 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 47, 377, 553, 716, 782, 1154, 1432 |
| BseMI | GCAATG | 1 cut(s) | 451 |
| BseMII | CTCAG | 7 cut(s) | 336, 650, 945, 1119, 1134, 1313, 1441 |
| BseNI | ACTGG | 4 cut(s) | 307, 776, 1189, 1383 |
| BseRI | GAGGAG | 1 cut(s) | 979 |
| BseXI | GCAGC | 1 cut(s) | 885 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1004 |
| BshFI | GGCC | 2 cut(s) | 40, 1147 |
| BsiEI | CGRYCG | 1 cut(s) | 1004 |
| BsiHKAI | GWGCWC | 2 cut(s) | 323, 396 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1195 |
| BsiSI | CCGG | 6 cut(s) | 267, 377, 537, 1000, 1196, 1519 |
| BsiWI | CGTACG | 1 cut(s) | 522 |
| BslFI | GGGAC | 3 cut(s) | 148, 462, 1186 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 47, 377, 553, 716, 782, 1154, 1432 |
| BsmAI | GTCTC | 6 cut(s) | 76, 275, 647, 952, 1118, 1441 |
| BsmBI | CGTCTC | 1 cut(s) | 952 |
| BsmFI | GGGAC | 3 cut(s) | 148, 462, 1186 |
| BsnI | GGCC | 2 cut(s) | 40, 1147 |
| Bso31I | GGTCTC | 1 cut(s) | 1441 |
| BsoBI | CYCGRG | 1 cut(s) | 1195 |
| Bsp1286I | GDGCHC | 2 cut(s) | 323, 396 |
| BspACI | CCGC | 2 cut(s) | 149, 278 |
| BspANI | GGCC | 2 cut(s) | 40, 1147 |
| BspCNI | CTCAG | 7 cut(s) | 335, 649, 946, 1120, 1133, 1312, 1440 |
| BspLI | GGNNCC | 2 cut(s) | 559, 1281 |
| BspPI | GGATC | 4 cut(s) | 610, 893, 937, 1144 |
| BspTNI | GGTCTC | 1 cut(s) | 1441 |
| BsrDI | GCAATG | 1 cut(s) | 451 |
| BsrI | ACTGG | 4 cut(s) | 307, 776, 1189, 1383 |
| BssECI | CCNNGG | 5 cut(s) | 209, 696, 1013, 1195, 1196 |
| BssNI | GRCGYC | 1 cut(s) | 1037 |
| BssT1I | CCWWGG | 1 cut(s) | 696 |
| Bst2UI | CCWGG | 3 cut(s) | 1015, 1350, 1433 |
| Bst4CI | ACNGT | 3 cut(s) | 757, 848, 1177 |
| Bst6I | CTCTTC | 4 cut(s) | 159, 291, 668, 1107 |
| BstACI | GRCGYC | 1 cut(s) | 1037 |
| BstBAI | YACGTR | 1 cut(s) | 1492 |
| BstC8I | GCNNGC | 1 cut(s) | 797 |
| BstDEI | CTNAG | 7 cut(s) | 322, 636, 954, 1120, 1128, 1299, 1427 |
| BstF5I | GGATG | 9 cut(s) | 120, 125, 196, 205, 534, 543, 1138, 1164, 1541 |
| BstH2I | RGCGCY | 1 cut(s) | 1668 |
| BstHHI | GCGC | 1 cut(s) | 1667 |
| BstMAI | GTCTC | 6 cut(s) | 76, 275, 647, 952, 1118, 1441 |
| BstMCI | CGRYCG | 1 cut(s) | 1004 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 796, 1428 |
| BstNI | CCWGG | 3 cut(s) | 1015, 1350, 1433 |
| BstNSI | RCATGY | 2 cut(s) | 413, 463 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1178 |
| BstSCI | CCNGG | 8 cut(s) | 266, 376, 1013, 1194, 1195, 1348, 1431, 1517 |
| BstSFI | CTRYAG | 1 cut(s) | 1557 |
| BstV1I | GCAGC | 1 cut(s) | 885 |
| BstV2I | GAAGAC | 2 cut(s) | 99, 1438 |
| BstX2I | RGATCY | 3 cut(s) | 615, 929, 1136 |
| BstYI | RGATCY | 3 cut(s) | 615, 929, 1136 |
| BsuRI | GGCC | 2 cut(s) | 40, 1147 |
| BtgZI | GCGATG | 1 cut(s) | 1065 |
| BtrI | CACGTC | 1 cut(s) | 1294 |
| BtsCI | GGATG | 9 cut(s) | 120, 125, 196, 205, 534, 543, 1138, 1164, 1541 |
| BtsIMutI | CAGTG | 4 cut(s) | 783, 1182, 1182, 1376 |
| Cac8I | GCNNGC | 1 cut(s) | 797 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1127 |
| CfoI | GCGC | 1 cut(s) | 1667 |
| Cfr13I | GGNCC | 2 cut(s) | 213, 1477 |
| Cfr9I | CCCGGG | 1 cut(s) | 1195 |
| CseI | GACGC | 1 cut(s) | 1026 |
| Csp6I | GTAC | 3 cut(s) | 354, 523, 907 |
| CviAII | CATG | 4 cut(s) | 410, 460, 490, 1206 |
| CviQI | GTAC | 3 cut(s) | 354, 523, 907 |
| DdeI | CTNAG | 7 cut(s) | 322, 636, 954, 1120, 1128, 1299, 1427 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1036, 1397 |
| Eam1104I | CTCTTC | 4 cut(s) | 159, 291, 668, 1107 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1036, 1397 |
| EarI | CTCTTC | 4 cut(s) | 159, 291, 668, 1107 |
| Ecl136II | GAGCTC | 2 cut(s) | 321, 394 |
| Eco130I | CCWWGG | 1 cut(s) | 696 |
| Eco147I | AGGCCT | 1 cut(s) | 40 |
| Eco24I | GRGCYC | 2 cut(s) | 323, 396 |
| Eco31I | GGTCTC | 1 cut(s) | 1441 |
| Eco32I | GATATC | 1 cut(s) | 601 |
| Eco47I | GGWCC | 2 cut(s) | 213, 1477 |
| Eco47III | AGCGCT | 1 cut(s) | 1666 |
| Eco53kI | GAGCTC | 2 cut(s) | 321, 394 |
| Eco57I | CTGAAG | 1 cut(s) | 438 |
| Eco88I | CYCGRG | 1 cut(s) | 1195 |
| EcoICRI | GAGCTC | 2 cut(s) | 321, 394 |
| EcoRI | GAATTC | 1 cut(s) | 1252 |
| EcoRII | CCWGG | 3 cut(s) | 1013, 1348, 1431 |
| EcoRV | GATATC | 1 cut(s) | 601 |
| EcoT14I | CCWWGG | 1 cut(s) | 696 |
| EcoT38I | GRGCYC | 2 cut(s) | 323, 396 |
| ErhI | CCWWGG | 1 cut(s) | 696 |
| Esp3I | CGTCTC | 1 cut(s) | 952 |
| FaeI | CATG | 4 cut(s) | 413, 463, 493, 1209 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1092, 1124 |
| FaqI | GGGAC | 3 cut(s) | 148, 462, 1186 |
| FatI | CATG | 4 cut(s) | 409, 459, 489, 1205 |
| FbaI | TGATCA | 4 cut(s) | 610, 1546, 1609, 1645 |
| Fnu4HI | GCNGC | 1 cut(s) | 874 |
| FokI | GGATG | 9 cut(s) | 127, 132, 192, 203, 530, 541, 1145, 1171, 1548 |
| FriOI | GRGCYC | 2 cut(s) | 323, 396 |
| Fsp4HI | GCNGC | 1 cut(s) | 874 |
| FspBI | CTAG | 6 cut(s) | 357, 386, 792, 1224, 1394, 1530 |
| GlaI | GCGC | 1 cut(s) | 1666 |
| GluI | GCNGC | 1 cut(s) | 874 |
| HaeII | RGCGCY | 1 cut(s) | 1668 |
| HaeIII | GGCC | 2 cut(s) | 40, 1147 |
| HapII | CCGG | 6 cut(s) | 267, 377, 537, 1000, 1196, 1519 |
| HgaI | GACGC | 1 cut(s) | 1026 |
| HhaI | GCGC | 1 cut(s) | 1667 |
| Hin1I | GRCGYC | 1 cut(s) | 1037 |
| Hin1II | CATG | 4 cut(s) | 413, 463, 493, 1209 |
| Hin6I | GCGC | 1 cut(s) | 1665 |
| HinP1I | GCGC | 1 cut(s) | 1665 |
| HincII | GTYRAC | 1 cut(s) | 823 |
| HindII | GTYRAC | 1 cut(s) | 823 |
| HpaI | GTTAAC | 1 cut(s) | 823 |
| HpaII | CCGG | 6 cut(s) | 267, 377, 537, 1000, 1196, 1519 |
| HphI | GGTGA | 7 cut(s) | 551, 1184, 1342, 1604, 1628, 1640, 1670 |
| Hpy166II | GTNNAC | 2 cut(s) | 823, 1291 |
| Hpy188III | TCNNGA | 6 cut(s) | 260, 921, 1100, 1247, 1456, 1530 |
| Hpy8I | GTNNAC | 2 cut(s) | 823, 1291 |
| Hpy99I | CGWCG | 1 cut(s) | 1042 |
| HpyAV | CCTTC | 1 cut(s) | 597 |
| HpyCH4III | ACNGT | 3 cut(s) | 757, 848, 1177 |
| HpyCH4IV | ACGT | 5 cut(s) | 429, 1065, 1218, 1293, 1491 |
| HpyCH4V | TGCA | 8 cut(s) | 16, 53, 340, 456, 873, 1055, 1078, 1570 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 796, 1428 |
| HpyF3I | CTNAG | 7 cut(s) | 322, 636, 954, 1120, 1128, 1299, 1427 |
| HpySE526I | ACGT | 5 cut(s) | 429, 1065, 1218, 1293, 1491 |
| Hsp92I | GRCGYC | 1 cut(s) | 1037 |
| Hsp92II | CATG | 4 cut(s) | 413, 463, 493, 1209 |
| HspAI | GCGC | 1 cut(s) | 1665 |
| Ksp22I | TGATCA | 4 cut(s) | 610, 1546, 1609, 1645 |
| KspAI | GTTAAC | 1 cut(s) | 823 |
| LmnI | GCTCC | 3 cut(s) | 391, 1093, 1279 |
| Lsp1109I | GCAGC | 1 cut(s) | 885 |
| LweI | GCATC | 2 cut(s) | 1042, 1627 |
| MaeI | CTAG | 6 cut(s) | 357, 386, 792, 1224, 1394, 1530 |
| MaeII | ACGT | 5 cut(s) | 429, 1065, 1218, 1293, 1491 |
| MaeIII | GTNAC | 6 cut(s) | 478, 539, 719, 1180, 1208, 1399 |
| MflI | RGATCY | 3 cut(s) | 615, 929, 1136 |
| MhlI | GDGCHC | 2 cut(s) | 323, 396 |
| MluCI | AATT | 4 cut(s) | 32, 227, 625, 1252 |
| MlyI | GAGTC | 3 cut(s) | 277, 615, 1411 |
| MmeI | TCCRAC | 5 cut(s) | 6, 643, 846, 1008, 1239 |
| MseI | TTAA | 3 cut(s) | 750, 822, 1068 |
| MslI | CAYNNNNRTG | 3 cut(s) | 464, 1605, 1623 |
| MspI | CCGG | 6 cut(s) | 267, 377, 537, 1000, 1196, 1519 |
| MspR9I | CCNGG | 8 cut(s) | 268, 378, 1015, 1196, 1197, 1350, 1433, 1519 |
| MvaI | CCWGG | 3 cut(s) | 1015, 1350, 1433 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 796, 1428 |
| NciI | CCSGG | 5 cut(s) | 268, 378, 1196, 1197, 1519 |
| NlaIII | CATG | 4 cut(s) | 413, 463, 493, 1209 |
| NlaIV | GGNNCC | 2 cut(s) | 559, 1281 |
| NmuCI | GTSAC | 3 cut(s) | 539, 1180, 1399 |
| NspI | RCATGY | 2 cut(s) | 413, 463 |
| PceI | AGGCCT | 1 cut(s) | 40 |
| PciI | ACATGT | 2 cut(s) | 409, 459 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1224, 1581 |
| Pfl23II | CGTACG | 1 cut(s) | 522 |
| PflFI | GACNNNGTC | 1 cut(s) | 506 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 716, 782 |
| PfoI | TCCNGGA | 1 cut(s) | 266 |
| PkrI | GCNGC | 1 cut(s) | 875 |
| PleI | GAGTC | 3 cut(s) | 277, 615, 1411 |
| PpsI | GAGTC | 3 cut(s) | 277, 615, 1411 |
| Ppu21I | YACGTR | 1 cut(s) | 1492 |
| PscI | ACATGT | 2 cut(s) | 409, 459 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1178 |
| Psp124BI | GAGCTC | 2 cut(s) | 323, 396 |
| Psp1406I | AACGTT | 1 cut(s) | 1218 |
| Psp6I | CCWGG | 3 cut(s) | 1013, 1348, 1431 |
| PspGI | CCWGG | 3 cut(s) | 1013, 1348, 1431 |
| PspLI | CGTACG | 1 cut(s) | 522 |
| PspN4I | GGNNCC | 2 cut(s) | 559, 1281 |
| PspPI | GGNCC | 2 cut(s) | 213, 1477 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1127 |
| PsuI | RGATCY | 3 cut(s) | 615, 929, 1136 |
| PsyI | GACNNNGTC | 1 cut(s) | 506 |
| RsaI | GTAC | 3 cut(s) | 355, 524, 908 |
| RsaNI | GTAC | 3 cut(s) | 354, 523, 907 |
| RseI | CAYNNNNRTG | 3 cut(s) | 464, 1605, 1623 |
| SacI | GAGCTC | 2 cut(s) | 323, 396 |
| SaqAI | TTAA | 3 cut(s) | 750, 822, 1068 |
| SatI | GCNGC | 1 cut(s) | 874 |
| Sau96I | GGNCC | 2 cut(s) | 213, 1477 |
| SchI | GAGTC | 3 cut(s) | 277, 615, 1411 |
| ScrFI | CCNGG | 8 cut(s) | 268, 378, 1015, 1196, 1197, 1350, 1433, 1519 |
| SduI | GDGCHC | 2 cut(s) | 323, 396 |
| SfaNI | GCATC | 2 cut(s) | 1042, 1627 |
| SfcI | CTRYAG | 1 cut(s) | 1557 |
| SinI | GGWCC | 2 cut(s) | 213, 1477 |
| SmaI | CCCGGG | 1 cut(s) | 1197 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 464, 1605, 1623 |
| SmlI | CTYRAG | 2 cut(s) | 933, 1247 |
| SmoI | CTYRAG | 2 cut(s) | 933, 1247 |
| SpeI | ACTAGT | 1 cut(s) | 385 |
| Sse9I | AATT | 4 cut(s) | 32, 227, 625, 1252 |
| SseBI | AGGCCT | 1 cut(s) | 40 |
| SsiI | CCGC | 2 cut(s) | 149, 278 |
| SspMI | CTAG | 6 cut(s) | 357, 386, 792, 1224, 1394, 1530 |
| SstI | GAGCTC | 2 cut(s) | 323, 396 |
| StuI | AGGCCT | 1 cut(s) | 40 |
| StyD4I | CCNGG | 8 cut(s) | 266, 376, 1013, 1194, 1195, 1348, 1431, 1517 |
| StyI | CCWWGG | 1 cut(s) | 696 |
| TaaI | ACNGT | 3 cut(s) | 757, 848, 1177 |
| TaiI | ACGT | 5 cut(s) | 432, 1068, 1221, 1296, 1494 |
| TaqI | TCGA | 4 cut(s) | 510, 515, 1040, 1455 |
| TasI | AATT | 4 cut(s) | 32, 227, 625, 1252 |
| TatI | WGTACW | 2 cut(s) | 353, 906 |
| Tru1I | TTAA | 3 cut(s) | 750, 822, 1068 |
| Tru9I | TTAA | 3 cut(s) | 750, 822, 1068 |
| TscAI | CASTG | 4 cut(s) | 783, 1182, 1189, 1383 |
| TseFI | GTSAC | 3 cut(s) | 539, 1180, 1399 |
| TseI | GCWGC | 1 cut(s) | 873 |
| Tsp45I | GTSAC | 3 cut(s) | 539, 1180, 1399 |
| TspDTI | ATGAA | 9 cut(s) | 191, 593, 686, 755, 822, 851, 906, 1194, 1670 |
| TspGWI | ACGGA | 2 cut(s) | 192, 976 |
| TspMI | CCCGGG | 1 cut(s) | 1195 |
| TspRI | CASTG | 4 cut(s) | 783, 1182, 1189, 1383 |
| Tth111I | GACNNNGTC | 1 cut(s) | 506 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 716, 782 |
| VpaK11BI | GGWCC | 2 cut(s) | 213, 1477 |
| XapI | RAATTY | 2 cut(s) | 227, 1252 |
| XbaI | TCTAGA | 1 cut(s) | 1529 |
| XceI | RCATGY | 2 cut(s) | 413, 463 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 946, 1622 |
| XmaI | CCCGGG | 1 cut(s) | 1195 |
| XspI | CTAG | 6 cut(s) | 357, 386, 792, 1224, 1394, 1530 |