Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001641

Physical Location & Seq

Genomic Coordinates Forward (+)

20566094 .. 20568380

Gene Structure 2287 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1125700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTTTGCCTCTAAAGATGTCTCTGAAGACCAACAAGTGATTGATTTTATCACTGTCCAATGCAACATTTCACATGAGCAAGACATCCTGCTTAATGCAAGCACAAAAACAAGCTTCACTGTTGATATAAACAACATGAGCAGTGACATAAGACCAAAGGCATTTCTGGTAGATGAAAATGAAGGAAATGATCATCTGAACAACATTCATAGTTTCCAGCAACAACCTGTTTTTCCTGCAATGGCATTGGATCACATTTCGAATTTGCCATGCGATATCGCAGTTGACCAAATCCGCCTATGCAGCACTTTCCCAATGAATTTCCTCCAAAATAGTAACAATGATACTGTCTATAATTTTGATCAAGGTTCACATGAGTCTTTGGGAGAGGTGGGGCTTCGAGCTGATAGTGATGCACACAAATTGCATAATAATATTCGAGTTAATGAGGGAATAGAAAACATGGAGCAGCAGGTTGTTGATGATCAAGACTCAATTAAACACAAGGGTGGAAGAACTGCAAATCATTCAGCTTCTGATTGTACTGATCAATTTGATGATGACGGTGGCACAAATTATAGGAGGAGAACAGGAAAAAAGCCTCAATCCAAAAACCTTGTGGCGGAGAGGAAGAGAAGGAAGAAACTTAACGAAAGACTCTATGATTGCCTTCGCTCTTTGGTTCCCAACATTTCTAAGCCACAGGTAGGGGTGATTCAGTTGGATGGAAATGAATTCTTTGTGACTGTGTTCTTTGAGCACAAGCCAGGAAGGTTTGTTAGATTGATGGATGCATTGGATTCTTTAGGCTTGGAAGTGACCAATGCATTTACTAGCTTCAGAAGCCTTGTCTCTAACGTCTTCAAAGTAGAGAAAAAAGACACTGCAGTAGTTCAAGCTGATCATGTGAGGGACTCTCTGCTAGAGATAACAAGGAATCCATCATCCAAAGGGTGGACAGAGATGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

324

Amino Acids

36.54

Weight (kDa)

5.47

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-TF_ACT-like_plant	PF22754	236 - 310	1.2e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16910
fragaria_vesca	FvH4_2g15460 FvH4_2g15460 FvH4_2g15470
malus_domestica	MD05G1122900.v1.1 MD05G1123000.v1.1 MD10G1125700.v1.1
prunus_persica	Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166900_v2.0.a1
pyrus_communis	pycom05g11720 pycom05g11750 pycom10g10820
rosa_chinensis	RchiOBHm_Chr6g0278441 RchiOBHm_Chr6g0278471
rosa_laevigata	RLG00000013226 RLG00000013228 RLG00000013381
rosa_multiflora	Rmu_sc0000258.1_g000003 Rmu_sc0000258.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229220 Rroxscaffold_7G00189870 Rroxscaffold_7G00189880 Rroxscaffold_7G00190350
rosa_rugosa	Rorug06G0006400 Rorug06G0117000 Rorug06G0117100.1
rosa_samantha	Rh1DG021000 Rh2DG345500 Rh2DG346800 Rh3AG263900 Rh3CG365900 Rh3DG372000 Rh5CG269300 Rh6AG226300 Rh6BG230500 Rh6CG233600 Rh6DG224900 Rh7AG412300 Rh7CG321300 Rh7DG336100
rosa_wichuraiana	Rw0G018390 Rw3G029150 Rw5G034840 Rw6G019740 Rw6G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	463
AccB7I	CCANNNNNTGG	1 cut(s)	954
AciI	CCGC	2 cut(s)	295, 623
AclWI	GGATC	1 cut(s)	258
AcsI	RAATTY	3 cut(s)	262, 319, 734
AcuI	CTGAAG	2 cut(s)	45, 823
AfaI	GTAC	1 cut(s)	544
AfiI	CCNNNNNNNGG	3 cut(s)	622, 707, 954
AgsI	TTSAA	2 cut(s)	865, 896
AjnI	CCWGG	1 cut(s)	766
AleI	CACNNNNGTG	1 cut(s)	507
AluBI	AGCT	5 cut(s)	114, 404, 533, 837, 899
AluI	AGCT	5 cut(s)	114, 404, 533, 837, 899
Alw21I	GWGCWC	1 cut(s)	762
Alw26I	GTCTC	2 cut(s)	25, 856
AlwI	GGATC	1 cut(s)	258
AlwNI	CAGNNNCTG	1 cut(s)	536
ApeKI	GCWGC	2 cut(s)	303, 469
ApoI	RAATTY	3 cut(s)	262, 319, 734
AsuHPI	GGTGA	1 cut(s)	724
AsuII	TTCGAA	1 cut(s)	260
BbsI	GAAGAC	2 cut(s)	33, 853
Bbv12I	GWGCWC	1 cut(s)	762
BbvI	GCAGC	2 cut(s)	315, 481
BccI	CCATC	3 cut(s)	719, 781, 949
BciT130I	CCWGG	1 cut(s)	768
BclI	TGATCA	5 cut(s)	190, 361, 484, 547, 901
BcoDI	GTCTC	2 cut(s)	25, 856
BfaI	CTAG	2 cut(s)	834, 923
BfmI	CTRYAG	1 cut(s)	885
BfuAI	ACCTGC	1 cut(s)	463
BisI	GCNGC	2 cut(s)	304, 470
BlsI	GCNGC	2 cut(s)	305, 471
Bme1390I	CCNGG	1 cut(s)	768
BmiI	GGNNCC	1 cut(s)	684
BmrFI	CCNGG	1 cut(s)	768
BmsI	GCATC	2 cut(s)	403, 781
BpiI	GAAGAC	2 cut(s)	33, 853
BplI	GAGNNNNNCTC	2 cut(s)	901, 933
Bpu14I	TTCGAA	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	3 cut(s)	622, 707, 954
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	768
BseGI	GGATG	4 cut(s)	84, 730, 796, 944
BseLI	CCNNNNNNNGG	3 cut(s)	622, 707, 954
BseMI	GCAATG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	598
BseXI	GCAGC	2 cut(s)	315, 481
BsiHKAI	GWGCWC	1 cut(s)	762
BslFI	GGGAC	1 cut(s)	926
BslI	CCNNNNNNNGG	3 cut(s)	622, 707, 954
BsmAI	GTCTC	2 cut(s)	25, 856
BsmFI	GGGAC	1 cut(s)	926
Bsp119I	TTCGAA	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	762
Bsp143I	GATC	6 cut(s)	190, 250, 361, 484, 547, 901
BspACI	CCGC	2 cut(s)	295, 623
BspLI	GGNNCC	1 cut(s)	684
BspMAI	CTGCAG	1 cut(s)	889
BspMI	ACCTGC	1 cut(s)	463
BspPI	GGATC	1 cut(s)	258
BspT104I	TTCGAA	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	246
BssMI	GATC	6 cut(s)	190, 250, 361, 484, 547, 901
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	5 cut(s)	55, 121, 349, 566, 748
Bst6I	CTCTTC	1 cut(s)	626
BstBI	TTCGAA	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	1 cut(s)	696
BstF5I	GGATG	4 cut(s)	84, 730, 796, 944
BstKTI	GATC	6 cut(s)	193, 253, 364, 487, 550, 904
BstMAI	GTCTC	2 cut(s)	25, 856
BstMBI	GATC	6 cut(s)	190, 250, 361, 484, 547, 901
BstMWI	GCNNNNNNNGC	2 cut(s)	303, 843
BstNI	CCWGG	1 cut(s)	768
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	1 cut(s)	885
BstV1I	GCAGC	2 cut(s)	315, 481
BstV2I	GAAGAC	2 cut(s)	33, 853
BtsCI	GGATG	4 cut(s)	84, 730, 796, 944
BtsI	GCAGTG	2 cut(s)	148, 882
BtsIMutI	CAGTG	4 cut(s)	51, 117, 148, 882
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	1 cut(s)	100
CaiI	CAGNNNCTG	1 cut(s)	536
Csp6I	GTAC	1 cut(s)	543
CviAII	CATG	6 cut(s)	74, 136, 270, 374, 463, 905
CviQI	GTAC	1 cut(s)	543
DdeI	CTNAG	1 cut(s)	696
DpnI	GATC	6 cut(s)	192, 252, 363, 486, 549, 903
DpnII	GATC	6 cut(s)	190, 250, 361, 484, 547, 901
Eam1104I	CTCTTC	1 cut(s)	626
EarI	CTCTTC	1 cut(s)	626
EciI	GGCGGA	2 cut(s)	284, 638
Eco32I	GATATC	1 cut(s)	277
Eco57I	CTGAAG	2 cut(s)	45, 823
EcoRI	GAATTC	1 cut(s)	734
EcoRII	CCWGG	1 cut(s)	766
EcoRV	GATATC	1 cut(s)	277
EcoT22I	ATGCAT	2 cut(s)	796, 829
FaeI	CATG	6 cut(s)	77, 139, 273, 377, 466, 908
FaqI	GGGAC	1 cut(s)	926
FatI	CATG	6 cut(s)	73, 135, 269, 373, 462, 904
FbaI	TGATCA	5 cut(s)	190, 361, 484, 547, 901
Fnu4HI	GCNGC	2 cut(s)	304, 470
FokI	GGATG	4 cut(s)	71, 737, 803, 931
Fsp4HI	GCNGC	2 cut(s)	304, 470
FspBI	CTAG	2 cut(s)	834, 923
GluI	GCNGC	2 cut(s)	304, 470
Hin1II	CATG	6 cut(s)	77, 139, 273, 377, 466, 908
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	7 cut(s)	377, 491, 657, 715, 800, 914, 937
HphI	GGTGA	1 cut(s)	724
Hpy166II	GTNNAC	3 cut(s)	286, 371, 957
Hpy188I	TCNGA	4 cut(s)	25, 198, 538, 842
Hpy188III	TCNNGA	1 cut(s)	488
Hpy8I	GTNNAC	3 cut(s)	286, 371, 957
HpyAV	CCTTC	4 cut(s)	176, 630, 680, 765
HpyCH4III	ACNGT	5 cut(s)	55, 121, 349, 566, 748
HpyCH4IV	ACGT	1 cut(s)	858
HpyF10VI	GCNNNNNNNGC	2 cut(s)	303, 843
HpyF3I	CTNAG	1 cut(s)	696
HpySE526I	ACGT	1 cut(s)	858
Hsp92II	CATG	6 cut(s)	77, 139, 273, 377, 466, 908
Ksp22I	TGATCA	5 cut(s)	190, 361, 484, 547, 901
Kzo9I	GATC	6 cut(s)	190, 250, 361, 484, 547, 901
LmnI	GCTCC	1 cut(s)	466
Lsp1109I	GCAGC	2 cut(s)	315, 481
LweI	GCATC	2 cut(s)	403, 781
MaeI	CTAG	2 cut(s)	834, 923
MaeII	ACGT	1 cut(s)	858
MaeIII	GTNAC	4 cut(s)	143, 335, 742, 817
MalI	GATC	6 cut(s)	192, 252, 363, 486, 549, 903
MboI	GATC	6 cut(s)	190, 250, 361, 484, 547, 901
MboII	GAAGA	5 cut(s)	38, 525, 643, 652, 853
MhlI	GDGCHC	1 cut(s)	762
MluCI	AATT	8 cut(s)	262, 319, 355, 422, 495, 551, 574, 734
MlyI	GAGTC	4 cut(s)	386, 485, 651, 908
MmeI	TCCRAC	1 cut(s)	702
MnlI	CCTC	8 cut(s)	19, 335, 382, 442, 576, 612, 621, 903
Mph1103I	ATGCAT	2 cut(s)	796, 829
MseI	TTAA	4 cut(s)	93, 444, 498, 648
MslI	CAYNNNNRTG	1 cut(s)	507
MspR9I	CCNGG	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	2 cut(s)	303, 843
NdeII	GATC	6 cut(s)	190, 250, 361, 484, 547, 901
NlaIII	CATG	6 cut(s)	77, 139, 273, 377, 466, 908
NlaIV	GGNNCC	1 cut(s)	684
NmuCI	GTSAC	3 cut(s)	143, 742, 817
NsiI	ATGCAT	2 cut(s)	796, 829
NspV	TTCGAA	1 cut(s)	260
OliI	CACNNNNGTG	1 cut(s)	507
PfeI	GAWTC	3 cut(s)	715, 800, 937
PflMI	CCANNNNNTGG	1 cut(s)	954
PkrI	GCNGC	2 cut(s)	305, 471
PleI	GAGTC	4 cut(s)	385, 485, 651, 908
PpsI	GAGTC	4 cut(s)	385, 485, 651, 908
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	1 cut(s)	684
PstI	CTGCAG	1 cut(s)	889
PstNI	CAGNNNCTG	1 cut(s)	536
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
RseI	CAYNNNNRTG	1 cut(s)	507
SaqAI	TTAA	4 cut(s)	93, 444, 498, 648
SatI	GCNGC	2 cut(s)	304, 470
Sau3AI	GATC	6 cut(s)	190, 250, 361, 484, 547, 901
SchI	GAGTC	4 cut(s)	386, 485, 651, 908
ScrFI	CCNGG	1 cut(s)	768
SduI	GDGCHC	1 cut(s)	762
SfaNI	GCATC	2 cut(s)	403, 781
SfcI	CTRYAG	1 cut(s)	885
SfuI	TTCGAA	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	507
Sse9I	AATT	8 cut(s)	262, 319, 355, 422, 495, 551, 574, 734
SsiI	CCGC	2 cut(s)	295, 623
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	2 cut(s)	834, 923
StyD4I	CCNGG	1 cut(s)	766
TaaI	ACNGT	5 cut(s)	55, 121, 349, 566, 748
TaiI	ACGT	1 cut(s)	861
TaqI	TCGA	3 cut(s)	260, 400, 439
TasI	AATT	8 cut(s)	262, 319, 355, 422, 495, 551, 574, 734
TatI	WGTACW	1 cut(s)	542
TfiI	GAWTC	3 cut(s)	715, 800, 937
Tru1I	TTAA	4 cut(s)	93, 444, 498, 648
Tru9I	TTAA	4 cut(s)	93, 444, 498, 648
TscAI	CASTG	4 cut(s)	58, 124, 148, 889
TseFI	GTSAC	3 cut(s)	143, 742, 817
TseI	GCWGC	2 cut(s)	303, 469
Tsp45I	GTSAC	3 cut(s)	143, 742, 817
TspDTI	ATGAA	5 cut(s)	189, 195, 197, 332, 747
TspRI	CASTG	4 cut(s)	58, 124, 148, 889
Van91I	CCANNNNNTGG	1 cut(s)	954
XapI	RAATTY	3 cut(s)	262, 319, 734
XcmI	CCANNNNNNNNNTGG	1 cut(s)	616
XspI	CTAG	2 cut(s)	834, 923
Zsp2I	ATGCAT	2 cut(s)	796, 829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.