Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001641

Physical Location & Seq

Genomic Coordinates Forward (+)

14292942 .. 14297111

Gene Structure 4170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10820.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGATGATCATGCCAAACCTTATCCAGAGGCTTAGATCCCTTGTGGGTTTGAAAGGCTGGGACTGTTGTGTTTTCTGGAAACTAAGTGAAGACCAAAGGTTAAGAAACTATAACTACATTATCAATCTTTCAATTTCTTCTTCTTCTTGTCTCAATATATATGTATATGTGTGTGCGCGCGCGTCCCAATGCAGCATCTCACTAGAGGAGGCAGCCCTGACTAACATAACTGGTACTCGCACAATGAGTGAAATTAATTCGAAGCAATTTTTAGACCATCTCTCATTCAAAACTACTTTAGAGAATTTAAATCTGCAACCATATGACGCATCCATGGAGAGAACAAGCAATTCTCCAATGAACCTTTTGCAGCAATTTACTGATTATAACTTAGGAAACCTAACCAAGAATAATATTGATATTTCTTCAGTAGAAAATGGATTTCAAGGTGGAAGCAATGCAGAGGTCCATGACGAGGTGTCCATTCTTGGGGATGCCATTAAATATGTGATACAGCTGCAGAAGCAAGCTAAACAACTCCAGGATAAGCTTGAAGATCATGCAGAGGATGATGGTGCTAACAACAACATCAAATCAGAGATTCAGAGCCAAAGTGGAGTTGATCTCATTAGGCCTAAAACTGATGATCATCAAGATGATCATAAAGTTTCAAATGGATTTCATTTTGGAACACCAGGAGACTGCAGCATCTCGAAACAAAGCCAAGATTATTCATATTATAAGTTAAGGCCCAAAAGAAAAAAAGGGATCAAGCATGAAAGTGAGGCCCATAACCAACCACTTGGCAGCTCCAATAACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

275

Amino Acids

30.94

Weight (kDa)

5.98

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16910
fragaria_vesca	FvH4_2g15460 FvH4_2g15460 FvH4_2g15470
malus_domestica	MD05G1122900.v1.1 MD05G1123000.v1.1 MD10G1125700.v1.1
prunus_persica	Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166900_v2.0.a1
pyrus_communis	pycom05g11720 pycom05g11750 pycom10g10820
rosa_chinensis	RchiOBHm_Chr6g0278441 RchiOBHm_Chr6g0278471
rosa_laevigata	RLG00000013226 RLG00000013228 RLG00000013381
rosa_multiflora	Rmu_sc0000258.1_g000003 Rmu_sc0000258.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229220 Rroxscaffold_7G00189870 Rroxscaffold_7G00189880 Rroxscaffold_7G00190350
rosa_rugosa	Rorug06G0006400 Rorug06G0117000 Rorug06G0117100.1
rosa_samantha	Rh1DG021000 Rh2DG345500 Rh2DG346800 Rh3AG263900 Rh3CG365900 Rh3DG372000 Rh5CG269300 Rh6AG226300 Rh6BG230500 Rh6CG233600 Rh6DG224900 Rh7AG412300 Rh7CG321300 Rh7DG336100
rosa_wichuraiana	Rw0G018390 Rw3G029150 Rw5G034840 Rw6G019740 Rw6G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	387, 741
AccII	CGCG	3 cut(s)	178, 180, 182
AclWI	GGATC	2 cut(s)	30, 776
AcsI	RAATTY	1 cut(s)	304
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	2 cut(s)	475, 489
AgsI	TTSAA	6 cut(s)	52, 132, 289, 446, 554, 672
AhdI	GACNNNNNGTC	1 cut(s)	478
AjnI	CCWGG	2 cut(s)	540, 694
AluBI	AGCT	4 cut(s)	517, 530, 550, 810
AluI	AGCT	4 cut(s)	517, 530, 550, 810
Alw26I	GTCTC	2 cut(s)	155, 693
AlwI	GGATC	2 cut(s)	30, 776
AoxI	GGCC	3 cut(s)	632, 749, 786
ApeKI	GCWGC	6 cut(s)	192, 212, 370, 517, 705, 807
ApoI	RAATTY	1 cut(s)	304
AseI	ATTAAT	1 cut(s)	255
AspLEI	GCGC	3 cut(s)	178, 180, 182
AspS9I	GGNCC	3 cut(s)	466, 750, 787
AsuII	TTCGAA	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	466
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	6 cut(s)	204, 224, 382, 504, 717, 819
BccI	CCATC	2 cut(s)	285, 566
BciT130I	CCWGG	2 cut(s)	542, 696
BclI	TGATCA	3 cut(s)	6, 646, 658
BcoDI	GTCTC	2 cut(s)	155, 693
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	2 cut(s)	518, 703
BisI	GCNGC	6 cut(s)	193, 213, 371, 518, 706, 808
BlsI	GCNGC	6 cut(s)	194, 214, 372, 519, 707, 809
Bme1390I	CCNGG	2 cut(s)	542, 696
Bme18I	GGWCC	1 cut(s)	466
BmeRI	GACNNNNNGTC	1 cut(s)	478
BmgT120I	GGNCC	3 cut(s)	466, 750, 787
BmrFI	CCNGG	2 cut(s)	542, 696
BmsI	GCATC	4 cut(s)	204, 338, 484, 717
BpiI	GAAGAC	1 cut(s)	96
BplI	GAGNNNNNCTC	2 cut(s)	609, 641
BpmI	CTGGAG	1 cut(s)	524
Bpu14I	TTCGAA	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	2 cut(s)	475, 489
Bse1I	ACTGG	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	463
Bse8I	GATNNNNATC	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	542, 696
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	3 cut(s)	329, 499, 574
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	2 cut(s)	475, 489
BseMI	GCAATG	1 cut(s)	463
BseNI	ACTGG	1 cut(s)	235
BsePI	GCGCGC	2 cut(s)	176, 178
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	6 cut(s)	204, 224, 382, 504, 717, 819
BseYI	CCCAGC	1 cut(s)	57
Bsh1236I	CGCG	3 cut(s)	178, 180, 182
BshFI	GGCC	3 cut(s)	634, 751, 788
BslFI	GGGAC	2 cut(s)	74, 169
BslI	CCNNNNNNNGG	2 cut(s)	475, 489
BsmAI	GTCTC	2 cut(s)	155, 693
BsmFI	GGGAC	2 cut(s)	74, 169
BsnI	GGCC	3 cut(s)	634, 751, 788
Bsp119I	TTCGAA	1 cut(s)	260
Bsp143I	GATC	7 cut(s)	6, 35, 556, 622, 646, 658, 768
Bsp19I	CCATGG	1 cut(s)	333
BspANI	GGCC	3 cut(s)	634, 751, 788
BspFNI	CGCG	3 cut(s)	178, 180, 182
BspMAI	CTGCAG	2 cut(s)	522, 707
BspPI	GGATC	2 cut(s)	30, 776
BspT104I	TTCGAA	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	333
BssHII	GCGCGC	2 cut(s)	176, 178
BssMI	GATC	7 cut(s)	6, 35, 556, 622, 646, 658, 768
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	2 cut(s)	542, 696
Bst4CI	ACNGT	1 cut(s)	65
BstBI	TTCGAA	1 cut(s)	260
BstC8I	GCNNGC	3 cut(s)	178, 180, 528
BstDEI	CTNAG	3 cut(s)	32, 83, 391
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	3 cut(s)	329, 499, 574
BstFNI	CGCG	3 cut(s)	178, 180, 182
BstHHI	GCGC	3 cut(s)	178, 180, 182
BstKTI	GATC	7 cut(s)	9, 38, 559, 625, 649, 661, 771
BstMAI	GTCTC	2 cut(s)	155, 693
BstMBI	GATC	7 cut(s)	6, 35, 556, 622, 646, 658, 768
BstMWI	GCNNNNNNNGC	1 cut(s)	523
BstNI	CCWGG	2 cut(s)	542, 696
BstSCI	CCNGG	2 cut(s)	540, 694
BstSFI	CTRYAG	2 cut(s)	518, 703
BstUI	CGCG	3 cut(s)	178, 180, 182
BstV1I	GCAGC	6 cut(s)	204, 224, 382, 504, 717, 819
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	35
BstXI	CCANNNNNNTGG	1 cut(s)	803
BstYI	RGATCY	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	634, 751, 788
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	3 cut(s)	329, 499, 574
Cac8I	GCNNGC	3 cut(s)	178, 180, 528
CfoI	GCGC	3 cut(s)	178, 180, 182
Cfr13I	GGNCC	3 cut(s)	466, 750, 787
CseI	GACGC	2 cut(s)	171, 335
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	5 cut(s)	10, 334, 470, 560, 776
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	3 cut(s)	32, 83, 391
DpnI	GATC	7 cut(s)	8, 37, 558, 624, 648, 660, 770
DpnII	GATC	7 cut(s)	6, 35, 556, 622, 646, 658, 768
DraI	TTTAAA	1 cut(s)	309
DriI	GACNNNNNGTC	1 cut(s)	478
Eam1105I	GACNNNNNGTC	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	634
Eco47I	GGWCC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	411
EcoRII	CCWGG	2 cut(s)	540, 694
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	5 cut(s)	13, 337, 473, 563, 779
FaqI	GGGAC	2 cut(s)	74, 169
FatI	CATG	5 cut(s)	9, 333, 469, 559, 775
FauNDI	CATATG	1 cut(s)	322
FbaI	TGATCA	3 cut(s)	6, 646, 658
Fnu4HI	GCNGC	6 cut(s)	193, 213, 371, 518, 706, 808
FokI	GGATG	3 cut(s)	316, 506, 581
Fsp4HI	GCNGC	6 cut(s)	193, 213, 371, 518, 706, 808
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	3 cut(s)	177, 179, 181
GluI	GCNGC	6 cut(s)	193, 213, 371, 518, 706, 808
GsaI	CCCAGC	1 cut(s)	61
GsuI	CTGGAG	1 cut(s)	524
HaeIII	GGCC	3 cut(s)	634, 751, 788
HgaI	GACGC	2 cut(s)	171, 335
HhaI	GCGC	3 cut(s)	178, 180, 182
Hin1II	CATG	5 cut(s)	13, 337, 473, 563, 779
Hin6I	GCGC	3 cut(s)	176, 178, 180
HinP1I	GCGC	3 cut(s)	176, 178, 180
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	1 cut(s)	601
Hpy188I	TCNGA	2 cut(s)	598, 606
Hpy188III	TCNNGA	4 cut(s)	25, 76, 653, 712
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4V	TGCA	7 cut(s)	192, 316, 370, 461, 520, 563, 705
HpyF10VI	GCNNNNNNNGC	1 cut(s)	523
HpyF3I	CTNAG	3 cut(s)	32, 83, 391
Hsp92II	CATG	5 cut(s)	13, 337, 473, 563, 779
HspAI	GCGC	3 cut(s)	176, 178, 180
Ksp22I	TGATCA	3 cut(s)	6, 646, 658
Kzo9I	GATC	7 cut(s)	6, 35, 556, 622, 646, 658, 768
LmnI	GCTCC	1 cut(s)	815
LpnPI	CCDG	9 cut(s)	38, 43, 61, 216, 230, 527, 554, 681, 708
Lsp1109I	GCAGC	6 cut(s)	204, 224, 382, 504, 717, 819
LweI	GCATC	4 cut(s)	204, 338, 484, 717
MaeI	CTAG	1 cut(s)	203
MalI	GATC	7 cut(s)	8, 37, 558, 624, 648, 660, 770
MauBI	CGCGCGCG	1 cut(s)	178
MboI	GATC	7 cut(s)	6, 35, 556, 622, 646, 658, 768
MboII	GAAGA	6 cut(s)	101, 129, 132, 135, 417, 566
MflI	RGATCY	1 cut(s)	35
MluCI	AATT	7 cut(s)	132, 252, 256, 266, 304, 349, 374
MnlI	CCTC	7 cut(s)	21, 199, 202, 457, 469, 559, 778
MseI	TTAA	6 cut(s)	101, 255, 308, 501, 746, 823
MslI	CAYNNNNRTG	2 cut(s)	654, 780
MspA1I	CMGCKG	1 cut(s)	517
MspR9I	CCNGG	2 cut(s)	542, 696
MvaI	CCWGG	2 cut(s)	542, 696
MvnI	CGCG	3 cut(s)	178, 180, 182
MwoI	GCNNNNNNNGC	1 cut(s)	523
NcoI	CCATGG	1 cut(s)	333
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	7 cut(s)	6, 35, 556, 622, 646, 658, 768
NlaIII	CATG	5 cut(s)	13, 337, 473, 563, 779
NspV	TTCGAA	1 cut(s)	260
PauI	GCGCGC	2 cut(s)	176, 178
PceI	AGGCCT	1 cut(s)	634
PfeI	GAWTC	1 cut(s)	601
PfoI	TCCNGGA	1 cut(s)	540
PkrI	GCNGC	6 cut(s)	194, 214, 372, 519, 707, 809
PshBI	ATTAAT	1 cut(s)	255
PsiI	TTATAA	2 cut(s)	387, 741
Psp6I	CCWGG	2 cut(s)	540, 694
PspFI	CCCAGC	1 cut(s)	57
PspGI	CCWGG	2 cut(s)	540, 694
PspPI	GGNCC	3 cut(s)	466, 750, 787
PstI	CTGCAG	2 cut(s)	522, 707
PsuI	RGATCY	1 cut(s)	35
PteI	GCGCGC	2 cut(s)	176, 178
PvuII	CAGCTG	1 cut(s)	517
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	2 cut(s)	654, 780
SaqAI	TTAA	6 cut(s)	101, 255, 308, 501, 746, 823
SatI	GCNGC	6 cut(s)	193, 213, 371, 518, 706, 808
Sau3AI	GATC	7 cut(s)	6, 35, 556, 622, 646, 658, 768
Sau96I	GGNCC	3 cut(s)	466, 750, 787
ScrFI	CCNGG	2 cut(s)	542, 696
SfaNI	GCATC	4 cut(s)	204, 338, 484, 717
SfcI	CTRYAG	2 cut(s)	518, 703
SfuI	TTCGAA	1 cut(s)	260
SinI	GGWCC	1 cut(s)	466
SmiI	ATTTAAAT	1 cut(s)	309
SmiMI	CAYNNNNRTG	2 cut(s)	654, 780
Sse9I	AATT	7 cut(s)	132, 252, 256, 266, 304, 349, 374
SseBI	AGGCCT	1 cut(s)	634
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	1 cut(s)	203
StuI	AGGCCT	1 cut(s)	634
StyD4I	CCNGG	2 cut(s)	540, 694
StyI	CCWWGG	1 cut(s)	333
SwaI	ATTTAAAT	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	65
TaqI	TCGA	2 cut(s)	260, 713
TasI	AATT	7 cut(s)	132, 252, 256, 266, 304, 349, 374
TfiI	GAWTC	1 cut(s)	601
Tru1I	TTAA	6 cut(s)	101, 255, 308, 501, 746, 823
Tru9I	TTAA	6 cut(s)	101, 255, 308, 501, 746, 823
TseI	GCWGC	6 cut(s)	192, 212, 370, 517, 705, 807
TspDTI	ATGAA	4 cut(s)	374, 671, 723, 792
VpaK11BI	GGWCC	1 cut(s)	466
VspI	ATTAAT	1 cut(s)	255
XapI	RAATTY	1 cut(s)	304
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.