Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000258.1

Orthogroup ID

OG0001641

Physical Location & Seq

Genomic Coordinates Forward (+)

14659 .. 16407

Gene Structure 1749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000258.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

atgactcatgatgaaatccaatcagagccagtacttttagaccacgaacaaatggatcccagcaatcatgttttctgctctggcgataattctgccctgaacttcttgcagcagtttagtcacaacttgggaaacaggatgaagaacattagttataatgtcaattcttttgaagattcatcacatgcaccatttctttctgataagcaaatggagcacccatttactaattgttcgaaaaaaactgggtttgatcaagcaacggaggcaatgcaaaggtccatgatgatgagtgagacacaagccacacaccatatgcatatgcaatatatggatcagtcattagaaccaggcatggatcatgagctggagcaggatgccggcaataatgataaggactcaaatattataaatgatgatgggggacatgctacagatttgaactcagattgcagtgatcatgatcagcttgatgctgaggatgatgcaaaatatcggaggaggaatggaaaagggcaggccaaaaaccttgttgcagagagaaagagaaggaagaagcttaatgacaggctctatgaacttaggtctttagttcccaatatttccaagttggatagagcttctattcttggggatgcaatagagtatgtgatggagttgcagaaccaagctaaaatactccaagatgagcttaatgatgatcatgatcacgaagaagttcgccatgttcatgaaggtgctgctaataagaactgtggcatcactttccaacataacagtttacaatcagagattgatcagagtcaaagtcgggttgaccttaaaactgagcaaattgatcataaagctccaaatgggtttcatttgggaacatcaggagacggtagtgtctcaaaacaaagccccgattcagaagttatccacgatcacaagacacagcagatggagccccaagtggaagtagctcaaatagatgggaatcagttctttgtgaaagtattctgtgagcacaagcctggtggatttgtgagattgatggaggcattgagctctctgagcctggaagttactaatgccaatgtaactagcttcagatgcctcgtctctaatgtcttcatcgtagagaagaaggatagtgaactagttgaagctgatgaagtgagagactcgttgctagagctaacaaggaaccccttaaaatggcgtagtgaggaaatggcgaaagcatcagagattgggattggcttggataacaaccaccaccatcatccccatcaccaaaacctccacaaccaccatttcagtcccttccacttgcaccatcttcctactgaagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

446

Amino Acids

50.73

Weight (kDa)

5.37

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16910
fragaria_vesca	FvH4_2g15460 FvH4_2g15460 FvH4_2g15470
malus_domestica	MD05G1122900.v1.1 MD05G1123000.v1.1 MD10G1125700.v1.1
prunus_persica	Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166900_v2.0.a1
pyrus_communis	pycom05g11720 pycom05g11750 pycom10g10820
rosa_chinensis	RchiOBHm_Chr6g0278441 RchiOBHm_Chr6g0278471
rosa_laevigata	RLG00000013226 RLG00000013228 RLG00000013381
rosa_multiflora	Rmu_sc0000258.1_g000003 Rmu_sc0000258.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229220 Rroxscaffold_7G00189870 Rroxscaffold_7G00189880 Rroxscaffold_7G00190350
rosa_rugosa	Rorug06G0006400 Rorug06G0117000 Rorug06G0117100.1
rosa_samantha	Rh1DG021000 Rh2DG345500 Rh2DG346800 Rh3AG263900 Rh3CG365900 Rh3DG372000 Rh5CG269300 Rh6AG226300 Rh6BG230500 Rh6CG233600 Rh6DG224900 Rh7AG412300 Rh7CG321300 Rh7DG336100
rosa_wichuraiana	Rw0G018390 Rw3G029150 Rw5G034840 Rw6G019740 Rw6G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	156, 410
AasI	GACNNNNNNGTC	1 cut(s)	887
AclWI	GGATC	4 cut(s)	50, 63, 342, 366
AcuI	CTGAAG	1 cut(s)	1075
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	1200
AgsI	TTSAA	3 cut(s)	173, 442, 1148
AhlI	ACTAGT	1 cut(s)	1141
AjnI	CCWGG	3 cut(s)	349, 1015, 1059
Alw21I	GWGCWC	3 cut(s)	219, 1011, 1052
Alw26I	GTCTC	5 cut(s)	290, 873, 895, 1108, 1158
AlwI	GGATC	4 cut(s)	50, 63, 342, 366
AoxI	GGCC	1 cut(s)	519
ApeKI	GCWGC	2 cut(s)	109, 740
Asp700I	GAANNNNTTC	3 cut(s)	717, 983, 998
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	1268
AsuII	TTCGAA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	279
BamHI	GGATCC	1 cut(s)	55
BanII	GRGCYC	2 cut(s)	951, 1052
BbsI	GAAGAC	1 cut(s)	1105
Bbv12I	GWGCWC	3 cut(s)	219, 1011, 1052
BbvCI	CCTCAGC	1 cut(s)	477
BbvI	GCAGC	2 cut(s)	121, 727
BccI	CCATC	8 cut(s)	413, 646, 937, 968, 1030, 1272, 1281, 1329
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciT130I	CCWGG	3 cut(s)	351, 1017, 1061
BclI	TGATCA	7 cut(s)	253, 457, 463, 700, 706, 796, 838
BcoDI	GTCTC	5 cut(s)	290, 873, 895, 1108, 1158
BcuI	ACTAGT	1 cut(s)	1141
BfaI	CTAG	3 cut(s)	1086, 1142, 1175
BfmI	CTRYAG	1 cut(s)	432
BisI	GCNGC	2 cut(s)	110, 741
BlsI	GCNGC	2 cut(s)	111, 742
BmcAI	AGTACT	1 cut(s)	33
Bme1390I	CCNGG	3 cut(s)	351, 1017, 1061
Bme18I	GGWCC	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	3 cut(s)	57, 948, 1190
BmrFI	CCNGG	3 cut(s)	351, 1017, 1061
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	7 cut(s)	367, 463, 475, 625, 768, 1085, 1235
BmuI	ACTGGG	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	1105
BpmI	CTGGAG	1 cut(s)	389
Bpu10I	CCTNAGC	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	236
BsaBI	GATNNNNATC	3 cut(s)	462, 705, 978
Bsc4I	CCNNNNNNNGG	1 cut(s)	1200
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	2 cut(s)	29, 250
Bse3DI	GCAATG	1 cut(s)	276
Bse8I	GATNNNNATC	3 cut(s)	462, 705, 978
BseBI	CCWGG	3 cut(s)	351, 1017, 1061
BseGI	GGATG	5 cut(s)	144, 382, 487, 640, 1267
BseJI	GATNNNNATC	3 cut(s)	462, 705, 978
BseLI	CCNNNNNNNGG	1 cut(s)	1200
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	4 cut(s)	459, 468, 819, 1046
BseNI	ACTGG	2 cut(s)	29, 250
BseRI	GAGGAG	1 cut(s)	514
BseXI	GCAGC	2 cut(s)	121, 727
BseYI	CCCAGC	1 cut(s)	59
BshFI	GGCC	1 cut(s)	521
BsiHKAI	GWGCWC	3 cut(s)	219, 1011, 1052
BsiSI	CCGG	1 cut(s)	381
BslFI	GGGAC	2 cut(s)	438, 1290
BslI	CCNNNNNNNGG	1 cut(s)	1200
BsmAI	GTCTC	5 cut(s)	290, 873, 895, 1108, 1158
BsmBI	CGTCTC	2 cut(s)	873, 1108
BsmFI	GGGAC	2 cut(s)	438, 1290
BsnI	GGCC	1 cut(s)	521
Bsp119I	TTCGAA	1 cut(s)	236
Bsp1286I	GDGCHC	4 cut(s)	219, 951, 1011, 1052
BspANI	GGCC	1 cut(s)	521
BspCNI	CTCAG	4 cut(s)	458, 469, 820, 1047
BspHI	TCATGA	5 cut(s)	7, 361, 460, 703, 730
BspLI	GGNNCC	3 cut(s)	57, 948, 1190
BspPI	GGATC	4 cut(s)	50, 63, 342, 366
BspT104I	TTCGAA	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	380
BsrI	ACTGG	2 cut(s)	29, 250
BssAI	RCCGGY	1 cut(s)	380
Bst2UI	CCWGG	3 cut(s)	351, 1017, 1061
Bst4CI	ACNGT	3 cut(s)	755, 779, 884
BstBI	TTCGAA	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	382, 519
BstDEI	CTNAG	5 cut(s)	445, 477, 581, 828, 1055
BstF5I	GGATG	5 cut(s)	144, 382, 487, 640, 1267
BstMAI	GTCTC	5 cut(s)	290, 873, 895, 1108, 1158
BstMWI	GCNNNNNNNGC	5 cut(s)	214, 266, 946, 1056, 1095
BstNI	CCWGG	3 cut(s)	351, 1017, 1061
BstNSI	RCATGY	2 cut(s)	188, 431
BstSCI	CCNGG	3 cut(s)	349, 1015, 1059
BstSFI	CTRYAG	1 cut(s)	432
BstV1I	GCAGC	2 cut(s)	121, 727
BstV2I	GAAGAC	1 cut(s)	1105
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	521
BtsCI	GGATG	5 cut(s)	144, 382, 487, 640, 1267
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	382, 519
CciI	TCATGA	5 cut(s)	7, 361, 460, 703, 730
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	32
CspCI	CAANNNNNGTGG	2 cut(s)	1000, 1035
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	5 cut(s)	445, 477, 581, 828, 1055
DrdI	GACNNNNNNGTC	1 cut(s)	887
DseDI	GACNNNNNNGTC	1 cut(s)	887
Ecl136II	GAGCTC	1 cut(s)	1050
Eco24I	GRGCYC	2 cut(s)	951, 1052
Eco47I	GGWCC	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	1050
Eco57I	CTGAAG	1 cut(s)	1075
EcoICRI	GAGCTC	1 cut(s)	1050
EcoRII	CCWGG	3 cut(s)	349, 1015, 1059
EcoT22I	ATGCAT	1 cut(s)	321
EcoT38I	GRGCYC	2 cut(s)	951, 1052
Esp3I	CGTCTC	2 cut(s)	873, 1108
FalI	AAGNNNNNCTT	2 cut(s)	675, 707
FaqI	GGGAC	2 cut(s)	438, 1290
FauNDI	CATATG	2 cut(s)	315, 321
FbaI	TGATCA	7 cut(s)	253, 457, 463, 700, 706, 796, 838
Fnu4HI	GCNGC	2 cut(s)	110, 741
FokI	GGATG	5 cut(s)	151, 389, 494, 647, 1254
FriOI	GRGCYC	2 cut(s)	951, 1052
Fsp4HI	GCNGC	2 cut(s)	110, 741
FspBI	CTAG	3 cut(s)	1086, 1142, 1175
GluI	GCNGC	2 cut(s)	110, 741
GsaI	CCCAGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	521
HapII	CCGG	1 cut(s)	381
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	7 cut(s)	4, 176, 398, 802, 908, 979, 1166
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	1 cut(s)	1268
Hpy166II	GTNNAC	3 cut(s)	782, 817, 1139
Hpy188III	TCNNGA	7 cut(s)	8, 362, 461, 704, 710, 731, 876
Hpy8I	GTNNAC	3 cut(s)	782, 817, 1139
HpyAV	CCTTC	4 cut(s)	543, 728, 1123, 1318
HpyCH4III	ACNGT	3 cut(s)	755, 779, 884
HpyF10VI	GCNNNNNNNGC	5 cut(s)	214, 266, 946, 1056, 1095
HpyF3I	CTNAG	5 cut(s)	445, 477, 581, 828, 1055
KroI	GCCGGC	1 cut(s)	380
KroNI	GCCGGC	1 cut(s)	382
Ksp22I	TGATCA	7 cut(s)	253, 457, 463, 700, 706, 796, 838
LmnI	GCTCC	4 cut(s)	214, 370, 853, 946
Lsp1109I	GCAGC	2 cut(s)	121, 727
LweI	GCATC	7 cut(s)	367, 463, 475, 625, 768, 1085, 1235
MaeI	CTAG	3 cut(s)	1086, 1142, 1175
MaeIII	GTNAC	3 cut(s)	119, 1066, 1081
MboII	GAAGA	7 cut(s)	154, 185, 565, 725, 1105, 1138, 1316
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	4 cut(s)	219, 951, 1011, 1052
MluCI	AATT	4 cut(s)	88, 163, 229, 834
MlyI	GAGTC	3 cut(s)	392, 811, 1160
MmeI	TCCRAC	2 cut(s)	591, 793
MnlI	CCTC	8 cut(s)	259, 472, 492, 495, 1033, 1109, 1204, 1295
Mph1103I	ATGCAT	1 cut(s)	321
MroNI	GCCGGC	1 cut(s)	380
MroXI	GAANNNNTTC	3 cut(s)	717, 983, 998
MseI	TTAA	4 cut(s)	561, 693, 822, 1196
MslI	CAYNNNNRTG	3 cut(s)	287, 729, 735
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	3 cut(s)	351, 1017, 1061
MvaI	CCWGG	3 cut(s)	351, 1017, 1061
MwoI	GCNNNNNNNGC	5 cut(s)	214, 266, 946, 1056, 1095
NaeI	GCCGGC	1 cut(s)	382
NdeI	CATATG	2 cut(s)	315, 321
NgoMIV	GCCGGC	1 cut(s)	380
NlaIV	GGNNCC	3 cut(s)	57, 948, 1190
NmuCI	GTSAC	1 cut(s)	119
NsiI	ATGCAT	1 cut(s)	321
NspI	RCATGY	2 cut(s)	188, 431
NspV	TTCGAA	1 cut(s)	236
PagI	TCATGA	5 cut(s)	7, 361, 460, 703, 730
PdiI	GCCGGC	1 cut(s)	382
PdmI	GAANNNNTTC	3 cut(s)	717, 983, 998
PfeI	GAWTC	3 cut(s)	176, 908, 979
PkrI	GCNGC	2 cut(s)	111, 742
PleI	GAGTC	3 cut(s)	392, 810, 1160
PpsI	GAGTC	3 cut(s)	392, 810, 1160
PsiI	TTATAA	2 cut(s)	156, 410
Psp124BI	GAGCTC	1 cut(s)	1052
Psp6I	CCWGG	3 cut(s)	349, 1015, 1059
PspFI	CCCAGC	1 cut(s)	59
PspGI	CCWGG	3 cut(s)	349, 1015, 1059
PspN4I	GGNNCC	3 cut(s)	57, 948, 1190
PspPI	GGNCC	1 cut(s)	279
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
RseI	CAYNNNNRTG	3 cut(s)	287, 729, 735
SacI	GAGCTC	1 cut(s)	1052
SaqAI	TTAA	4 cut(s)	561, 693, 822, 1196
SatI	GCNGC	2 cut(s)	110, 741
Sau96I	GGNCC	1 cut(s)	279
ScaI	AGTACT	1 cut(s)	33
SchI	GAGTC	3 cut(s)	392, 811, 1160
ScrFI	CCNGG	3 cut(s)	351, 1017, 1061
SduI	GDGCHC	4 cut(s)	219, 951, 1011, 1052
SfaNI	GCATC	7 cut(s)	367, 463, 475, 625, 768, 1085, 1235
SfcI	CTRYAG	1 cut(s)	432
SfuI	TTCGAA	1 cut(s)	236
SinI	GGWCC	1 cut(s)	279
SmiMI	CAYNNNNRTG	3 cut(s)	287, 729, 735
SpeI	ACTAGT	1 cut(s)	1141
Sse9I	AATT	4 cut(s)	88, 163, 229, 834
SspI	AATATT	2 cut(s)	406, 601
SspMI	CTAG	3 cut(s)	1086, 1142, 1175
SstI	GAGCTC	1 cut(s)	1052
StyD4I	CCNGG	3 cut(s)	349, 1015, 1059
TaaI	ACNGT	3 cut(s)	755, 779, 884
TaqI	TCGA	1 cut(s)	236
TasI	AATT	4 cut(s)	88, 163, 229, 834
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	3 cut(s)	176, 908, 979
Tru1I	TTAA	4 cut(s)	561, 693, 822, 1196
Tru9I	TTAA	4 cut(s)	561, 693, 822, 1196
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	2 cut(s)	109, 740
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	9 cut(s)	27, 155, 168, 591, 719, 747, 851, 1105, 1170
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	279
XceI	RCATGY	2 cut(s)	188, 431
XmnI	GAANNNNTTC	3 cut(s)	717, 983, 998
XspI	CTAG	3 cut(s)	1086, 1142, 1175
ZrmI	AGTACT	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.