FvH4_2g15460
BHLH Family

Transcription factor ABORTED

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
13605800 .. 13609098
3299 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15460.t2

Sequence Viewer

Length: 1656 bp
ATGAACATGACTATGTATAACCTGATAATTGAGAGGCTGAGACCCCTTGTGGGTTTGAAAGGCTGGGATTATTGTGTCCTGTGGAAGTTGAGTGAAGACCAAAGGTTCATTGAGTGGATTGGTTGTTGCTGTTCTGGGATTGATGAGGACAGCCAGAATGGTGGACAAGAACTTCTGTTTCCAGTTTATCAAGTCTTTCGGTGCAGGGATACAATGCAACACTCAAGAACTAGTTCTTGTGATATCCTTGCTAGTCTTCCTTCTTCAATGCCCTTAGACTCTGGGATTTATGCAAAAACCATAATGTCAAACCAGCCCTGTTGGTTGAACTGCTCCTCCAGTAACAGTGATTCAAGTGCTATGCTAGAAAGAGATGGGACACGAGTTTTGGTTCCAACTGCAGGAGGGTTAATGATTGAGCTGTTTGTCTCCAAAGATGTCTTCGAGGACCAGCATGTCATTGATTTCATCACAGCACAATGCAACATTTGGCGCGAGCAAGACACCCTGATCAGTGCAAGCAACACATGTAGTACAAACACCCCTGTACTTTCTCCATCAATGGCATCATTGGATCCTCATGATGTGAATTTGCCATACGATATCACAGTTGATCGAATCCACCTATGCTCTTCTGAGTCTTCTTCTCCATTGAACTTCCTGCAACATGTCACCAGTTACAACTCTGAGAACAGAATGAAGAATAGTCCTAGTGCATGTACCTATAATCAGGGTAATTCACATGAGTACTCTTTGGATCAGCCATTAGAAAACATGGAGCAACAAGGTACTCTGGATGATCAGGATTCGATAAAACAAGCAGACCATTCAGCTTCTGATTGCAGTGATCAAACTGATGAGAACACAAATTATAAAAGAAGAAATGGAAAAGAGCCTCAATCCAAAAACCTTGTTGCTGAGAGGAAGAGAAGGAAGAAGCTTAACGAAAAACTCTATAAACTTCGCTCTTTGGTTCCCAACATTTCCAAGATGGACAAGGCTTCGATTCTCAAGGATGCGATTGATTATGTTAAGGACTTGCAGAGACAAGTGAAAGAACTCCAAGATGTGCTTGAAGATAATTCAAATGGAGGAGGAGCTAAGAGAACTTTCAATAGTATCTCCGGAAATTACAACAATTACCAGTCAGAGAATCAGCATGGAATTTCTATGGCAAATAAAACAGAAAGTGACAAGCCTCAAAATGGGTTTCATGATTCGGATCATAATACTAATGAGATGGGACAACAGCAGATGGAGCCACAAGTAGGAGTAACTCAGTTAGACGGCAACGAGTTCTTTGTGACAGTATTCTGTGAGCAGAAGCCAGAAGGGTTTGTGAGATTGATGGAGGCATTGGATAGTTTAGGATTGGAAGTGACTAATGCAAATGTGACTAGCTTCAGGAGCCTCGTCTCTAATGTGTTTAAAGTAGAGAAAAGGGACAGTGAAATACTGCAAGCTGATGAAGTGAGGGACTCTTTGCTGGAGATAACACGGAATCCATCGAAAGGGTACTGGCCTGAGATGGCAAAAGCTAAAGCATCTGGGAATGACCGTTCTTTGGACTATGATCATGATAATAAGCATCACTACCACCATCACCTCCACAACTACCACAATTCTACATGTCATCTTCAACATCTTTATGATTAA

Protein Analysis

552

Amino Acids

62.56

Weight (kDa)

5.26

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 43 - 190 2e-16 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 337 - 380 4.6e-12 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 454 - 530 6.7e-12 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 873
AasI GACNNNNNNGTC 1 cut(s) 455
AccII CGCG 1 cut(s) 495
AccIII TCCGGA 1 cut(s) 1124
AclWI GGATC 4 cut(s) 569, 582, 765, 1230
AcsI RAATTY 2 cut(s) 589, 1164
AcuI CTGAAG 1 cut(s) 1387
AfaI GTAC 6 cut(s) 535, 549, 721, 749, 790, 1517
AfiI CCNNNNNNNGG 6 cut(s) 50, 401, 1205, 1268, 1511, 1564
AflIII ACRYGT 3 cut(s) 527, 667, 1628
AgsI TTSAA 9 cut(s) 58, 267, 328, 354, 655, 1076, 1086, 1114, 1640
AhlI ACTAGT 1 cut(s) 230
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
AloI GAACNNNNNNTCC 4 cut(s) 320, 352, 1543, 1575
AluBI AGCT 7 cut(s) 421, 833, 940, 1100, 1401, 1463, 1538
AluI AGCT 7 cut(s) 421, 833, 940, 1100, 1401, 1463, 1538
Alw26I GTCTC 4 cut(s) 34, 433, 1039, 1420
AlwI GGATC 4 cut(s) 569, 582, 765, 1230
AlwNI CAGNNNCTG 1 cut(s) 836
Aor13HI TCCGGA 1 cut(s) 1124
AoxI GGCC 1 cut(s) 1520
ApoI RAATTY 2 cut(s) 589, 1164
ArsI GACNNNNNNTTYG 2 cut(s) 370, 402
Asp700I GAANNNNTTC 1 cut(s) 232
AspLEI GCGC 1 cut(s) 495
AspS9I GGNCC 1 cut(s) 448
AsuHPI GGTGA 2 cut(s) 664, 1595
AvaII GGWCC 1 cut(s) 448
BamHI GGATCC 1 cut(s) 574
BauI CACGAG 1 cut(s) 381
BbsI GAAGAC 4 cut(s) 102, 248, 433, 633
BccI CCATC 9 cut(s) 368, 565, 985, 1234, 1249, 1342, 1513, 1522, 1608
BceAI ACGGC 1 cut(s) 1303
BciVI GTATCC 1 cut(s) 202
BclI TGATCA 4 cut(s) 510, 799, 847, 1573
BcoDI GTCTC 4 cut(s) 34, 433, 1039, 1420
BcuI ACTAGT 1 cut(s) 230
BfaI CTAG 5 cut(s) 231, 252, 365, 711, 1398
BfmI CTRYAG 1 cut(s) 399
BfuI GTATCC 1 cut(s) 202
BmcAI AGTACT 1 cut(s) 749
Bme18I GGWCC 1 cut(s) 448
BmgT120I GGNCC 1 cut(s) 448
BmiI GGNNCC 5 cut(s) 393, 576, 975, 1260, 1409
BmsI GCATC 4 cut(s) 575, 1006, 1553, 1597
BpiI GAAGAC 4 cut(s) 102, 248, 433, 633
BpmI CTGGAG 2 cut(s) 322, 1508
BpuEI CTTGAG 2 cut(s) 208, 995
BsaBI GATNNNNATC 1 cut(s) 1221
BsaI GGTCTC 1 cut(s) 34
BsaWI WCCGGW 1 cut(s) 1124
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 6 cut(s) 50, 401, 1205, 1268, 1511, 1564
Bse1I ACTGG 5 cut(s) 182, 339, 675, 1144, 1523
Bse8I GATNNNNATC 1 cut(s) 1221
BseAI TCCGGA 1 cut(s) 1124
BseGI GGATG 2 cut(s) 802, 1021
BseJI GATNNNNATC 1 cut(s) 1221
BseLI CCNNNNNNNGG 6 cut(s) 50, 401, 1205, 1268, 1511, 1564
BseMII CTCAG 6 cut(s) 29, 627, 678, 909, 1292, 1515
BseNI ACTGG 5 cut(s) 182, 339, 675, 1144, 1523
BseRI GAGGAG 3 cut(s) 325, 1107, 1110
BseYI CCCAGC 1 cut(s) 63
BsgI GTGCAG 1 cut(s) 223
Bsh1236I CGCG 1 cut(s) 495
BshFI GGCC 1 cut(s) 1522
BsiSI CCGG 1 cut(s) 1125
BslFI GGGAC 4 cut(s) 391, 1257, 1457, 1490
BslI CCNNNNNNNGG 6 cut(s) 50, 401, 1205, 1268, 1511, 1564
BsmAI GTCTC 4 cut(s) 34, 433, 1039, 1420
BsmBI CGTCTC 1 cut(s) 1420
BsmFI GGGAC 4 cut(s) 391, 1257, 1457, 1490
BsnI GGCC 1 cut(s) 1522
Bso31I GGTCTC 1 cut(s) 34
Bsp13I TCCGGA 1 cut(s) 1124
Bsp143I GATC 8 cut(s) 510, 574, 613, 757, 799, 847, 1222, 1573
BspANI GGCC 1 cut(s) 1522
BspCNI CTCAG 6 cut(s) 30, 628, 679, 910, 1291, 1516
BspEI TCCGGA 1 cut(s) 1124
BspFNI CGCG 1 cut(s) 495
BspHI TCATGA 3 cut(s) 580, 1213, 1576
BspLI GGNNCC 5 cut(s) 393, 576, 975, 1260, 1409
BspMAI CTGCAG 1 cut(s) 403
BspPI GGATC 4 cut(s) 569, 582, 765, 1230
BspQI GCTCTTC 1 cut(s) 637
BspTNI GGTCTC 1 cut(s) 34
BsrI ACTGG 5 cut(s) 182, 339, 675, 1144, 1523
BssMI GATC 8 cut(s) 510, 574, 613, 757, 799, 847, 1222, 1573
BssSI CACGAG 1 cut(s) 381
Bst2BI CACGAG 1 cut(s) 381
Bst4CI ACNGT 5 cut(s) 347, 610, 1309, 1448, 1559
Bst6I CTCTTC 2 cut(s) 637, 920
BstC8I GCNNGC 3 cut(s) 497, 520, 1461
BstDEI CTNAG 8 cut(s) 38, 274, 636, 687, 918, 1101, 1278, 1524
BstF5I GGATG 2 cut(s) 802, 1021
BstFNI CGCG 1 cut(s) 495
BstHHI GCGC 1 cut(s) 495
BstKTI GATC 8 cut(s) 513, 577, 616, 760, 802, 850, 1225, 1576
BstMAI GTCTC 4 cut(s) 34, 433, 1039, 1420
BstMBI GATC 8 cut(s) 510, 574, 613, 757, 799, 847, 1222, 1573
BstMWI GCNNNNNNNGC 2 cut(s) 1258, 1407
BstNSI RCATGY 5 cut(s) 458, 531, 671, 720, 1632
BstSFI CTRYAG 1 cut(s) 399
BstUI CGCG 1 cut(s) 495
BstV2I GAAGAC 4 cut(s) 102, 248, 433, 633
BstX2I RGATCY 1 cut(s) 574
BstXI CCANNNNNNTGG 1 cut(s) 161
BstYI RGATCY 1 cut(s) 574
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 1 cut(s) 1522
BtsCI GGATG 2 cut(s) 802, 1021
BtsI GCAGTG 1 cut(s) 850
BtsIMutI CAGTG 4 cut(s) 352, 520, 850, 1453
Cac8I GCNNGC 3 cut(s) 497, 520, 1461
CaiI CAGNNNCTG 1 cut(s) 836
CciI TCATGA 3 cut(s) 580, 1213, 1576
CfoI GCGC 1 cut(s) 495
Cfr13I GGNCC 1 cut(s) 448
Csp6I GTAC 6 cut(s) 534, 548, 720, 748, 789, 1516
CviQI GTAC 6 cut(s) 534, 548, 720, 748, 789, 1516
DdeI CTNAG 8 cut(s) 38, 274, 636, 687, 918, 1101, 1278, 1524
DpnI GATC 8 cut(s) 512, 576, 615, 759, 801, 849, 1224, 1575
DpnII GATC 8 cut(s) 510, 574, 613, 757, 799, 847, 1222, 1573
DraI TTTAAA 1 cut(s) 1429
DrdI GACNNNNNNGTC 1 cut(s) 455
DseDI GACNNNNNNGTC 1 cut(s) 455
Eam1104I CTCTTC 2 cut(s) 637, 920
EarI CTCTTC 2 cut(s) 637, 920
Eco31I GGTCTC 1 cut(s) 34
Eco32I GATATC 2 cut(s) 244, 604
Eco47I GGWCC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 1387
EcoRV GATATC 2 cut(s) 244, 604
Esp3I CGTCTC 1 cut(s) 1420
FalI AAGNNNNNCTT 2 cut(s) 1056, 1088
FaqI GGGAC 4 cut(s) 391, 1257, 1457, 1490
FbaI TGATCA 4 cut(s) 510, 799, 847, 1573
FokI GGATG 2 cut(s) 809, 1028
FspBI CTAG 5 cut(s) 231, 252, 365, 711, 1398
GlaI GCGC 1 cut(s) 494
GsaI CCCAGC 1 cut(s) 67
GsuI CTGGAG 2 cut(s) 322, 1508
HaeIII GGCC 1 cut(s) 1522
HapII CCGG 1 cut(s) 1125
HhaI GCGC 1 cut(s) 495
Hin6I GCGC 1 cut(s) 493
HinP1I GCGC 1 cut(s) 493
HindIII AAGCTT 1 cut(s) 938
HpaII CCGG 1 cut(s) 1125
HphI GGTGA 2 cut(s) 664, 1595
Hpy166II GTNNAC 1 cut(s) 164
Hpy188I TCNGA 5 cut(s) 637, 688, 838, 1150, 1222
Hpy188III TCNNGA 8 cut(s) 225, 581, 794, 803, 1125, 1214, 1405, 1577
Hpy8I GTNNAC 1 cut(s) 164
HpyAV CCTTC 3 cut(s) 270, 924, 1325
HpyCH4III ACNGT 5 cut(s) 347, 610, 1309, 1448, 1559
HpyF10VI GCNNNNNNNGC 2 cut(s) 1258, 1407
HpyF3I CTNAG 8 cut(s) 38, 274, 636, 687, 918, 1101, 1278, 1524
HspAI GCGC 1 cut(s) 493
Kpn2I TCCGGA 1 cut(s) 1124
Ksp22I TGATCA 4 cut(s) 510, 799, 847, 1573
Kzo9I GATC 8 cut(s) 510, 574, 613, 757, 799, 847, 1222, 1573
LguI GCTCTTC 1 cut(s) 637
LmnI GCTCC 5 cut(s) 338, 778, 1097, 1258, 1407
LweI GCATC 4 cut(s) 575, 1006, 1553, 1597
MaeI CTAG 5 cut(s) 231, 252, 365, 711, 1398
MaeIII GTNAC 8 cut(s) 341, 670, 677, 1190, 1273, 1303, 1378, 1393
MalI GATC 8 cut(s) 512, 576, 615, 759, 801, 849, 1224, 1575
MboI GATC 8 cut(s) 510, 574, 613, 757, 799, 847, 1222, 1573
MflI RGATCY 1 cut(s) 574
MluCI AATT 9 cut(s) 27, 589, 736, 868, 1081, 1129, 1138, 1164, 1621
MlyI GAGTC 3 cut(s) 272, 647, 1472
MmeI TCCRAC 1 cut(s) 419
MroI TCCGGA 1 cut(s) 1124
MroXI GAANNNNTTC 1 cut(s) 232
MseI TTAA 5 cut(s) 410, 942, 1032, 1428, 1654
MslI CAYNNNNRTG 2 cut(s) 11, 1647
MspI CCGG 1 cut(s) 1125
MvnI CGCG 1 cut(s) 495
MwoI GCNNNNNNNGC 2 cut(s) 1258, 1407
NdeII GATC 8 cut(s) 510, 574, 613, 757, 799, 847, 1222, 1573
NlaIV GGNNCC 5 cut(s) 393, 576, 975, 1260, 1409
NmuCI GTSAC 5 cut(s) 670, 1190, 1303, 1378, 1393
NspI RCATGY 5 cut(s) 458, 531, 671, 720, 1632
PagI TCATGA 3 cut(s) 580, 1213, 1576
PciI ACATGT 3 cut(s) 527, 667, 1628
PciSI GCTCTTC 1 cut(s) 637
PdmI GAANNNNTTC 1 cut(s) 232
PfeI GAWTC 7 cut(s) 350, 618, 806, 1006, 1153, 1217, 1501
PleI GAGTC 3 cut(s) 272, 646, 1472
PpsI GAGTC 3 cut(s) 272, 646, 1472
PscI ACATGT 3 cut(s) 527, 667, 1628
PsiI TTATAA 1 cut(s) 873
PspFI CCCAGC 1 cut(s) 63
PspN4I GGNNCC 5 cut(s) 393, 576, 975, 1260, 1409
PspPI GGNCC 1 cut(s) 448
PstI CTGCAG 1 cut(s) 403
PstNI CAGNNNCTG 1 cut(s) 836
PsuI RGATCY 1 cut(s) 574
RsaI GTAC 6 cut(s) 535, 549, 721, 749, 790, 1517
RsaNI GTAC 6 cut(s) 534, 548, 720, 748, 789, 1516
RseI CAYNNNNRTG 2 cut(s) 11, 1647
SapI GCTCTTC 1 cut(s) 637
SaqAI TTAA 5 cut(s) 410, 942, 1032, 1428, 1654
Sau3AI GATC 8 cut(s) 510, 574, 613, 757, 799, 847, 1222, 1573
Sau96I GGNCC 1 cut(s) 448
ScaI AGTACT 1 cut(s) 749
SchI GAGTC 3 cut(s) 272, 647, 1472
SfaNI GCATC 4 cut(s) 575, 1006, 1553, 1597
SfcI CTRYAG 1 cut(s) 399
SinI GGWCC 1 cut(s) 448
SmiMI CAYNNNNRTG 2 cut(s) 11, 1647
SmlI CTYRAG 2 cut(s) 223, 1010
SmoI CTYRAG 2 cut(s) 223, 1010
SpeI ACTAGT 1 cut(s) 230
Sse9I AATT 9 cut(s) 27, 589, 736, 868, 1081, 1129, 1138, 1164, 1621
SspMI CTAG 5 cut(s) 231, 252, 365, 711, 1398
TaaI ACNGT 5 cut(s) 347, 610, 1309, 1448, 1559
TaqI TCGA 5 cut(s) 444, 616, 809, 1004, 1508
TasI AATT 9 cut(s) 27, 589, 736, 868, 1081, 1129, 1138, 1164, 1621
TatI WGTACW 3 cut(s) 533, 547, 747
TfiI GAWTC 7 cut(s) 350, 618, 806, 1006, 1153, 1217, 1501
Tru1I TTAA 5 cut(s) 410, 942, 1032, 1428, 1654
Tru9I TTAA 5 cut(s) 410, 942, 1032, 1428, 1654
TscAI CASTG 4 cut(s) 352, 520, 850, 1453
TseFI GTSAC 5 cut(s) 670, 1190, 1303, 1378, 1393
Tsp45I GTSAC 5 cut(s) 670, 1190, 1303, 1378, 1393
TspDTI ATGAA 6 cut(s) 17, 97, 457, 713, 1202, 1482
TspGWI ACGGA 1 cut(s) 1513
TspRI CASTG 4 cut(s) 352, 520, 850, 1453
VpaK11BI GGWCC 1 cut(s) 448
XapI RAATTY 2 cut(s) 589, 1164
XceI RCATGY 5 cut(s) 458, 531, 671, 720, 1632
XmnI GAANNNNTTC 1 cut(s) 232
XspI CTAG 5 cut(s) 231, 252, 365, 711, 1398
ZrmI AGTACT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.