Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001641

Physical Location & Seq

Genomic Coordinates Reverse (-)

46025471 .. 46027463

Gene Structure 1993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG365900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAGGGGAAATCGTACCAGAGGTTCCCTCGGGTGAAAATCCCTGAAATCAGGCACGATTACCTCAAGTTCAAGCTCTGCGACACCGACGGGAGAGTGGCCAACCGGCTCCGGCCGTCTCCATCGACCTCGTCGAGATCGGAATCAACTCCTCCATCCTCAAAGACGACTTCCAAACAGAGAGGGATTATCATATTGAAGTTGCAAAGGGGGCAAGAGCTGAGGCTGAGGGCTATTGCTAGAAAAGGGATTGATGTAATGAACATGACTATGTATAATCTGATAATTGAGAGGCTTAGACCACTTGTGGGTTTGAAAGGCTGGGATTATTGTGTTCTCTGGAAGTTGAGTGAAGACCAAAGATTATGGATTGGTTGCTGTTGTTATGGGATTGATGAGGACACCCATAATGGTGGACAAGAACTTCTATTTCCAGTTTATCAAGTTTTTCAGTGCAAGGATACAATGCTGCTCTCAAGAACTAATTATTTTGATATCCTTATTGCTCGTGATTACAAAAACAGGATTTATGCAAAAACATTTATGTCAAACCAGCCCTGTTGGTTGAACTGTTCCTCTAGTAACAGAGATTCAAGTGCTATGCTGGTGATTTTGGTTCCAACTGCAGGAGGGTTTATGATTGAGCTGTTTGTCTCCAAAGATGTCTCCGAGGACCAGCATGTCATTGATTTCATCACAGCACAATGCAACATTTGGTGCGAGCAAGACACCCTGATCAGTGCAAGCAACACATGTAGTACAAACACCCCTGTATTTTCCCCATCAATGGCATCATTGGATCCTCATGATGCGAATTTGCCATACGATATCACAGTAGGTCGAATCCGCCTATGCTCTTCTGAGTCCTCTTCTCCATTGAACTTCCTACAACATGTCAGTAGTTACAACTCTGAGAATAGAATGAAGAATAGTACTGGTGCATGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

316

Amino Acids

35.92

Weight (kDa)

8.52

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	97 - 233	7.1e-08	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16910
fragaria_vesca	FvH4_2g15460 FvH4_2g15460 FvH4_2g15470
malus_domestica	MD05G1122900.v1.1 MD05G1123000.v1.1 MD10G1125700.v1.1
prunus_persica	Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166900_v2.0.a1
pyrus_communis	pycom05g11720 pycom05g11750 pycom10g10820
rosa_chinensis	RchiOBHm_Chr6g0278441 RchiOBHm_Chr6g0278471
rosa_laevigata	RLG00000013226 RLG00000013228 RLG00000013381
rosa_multiflora	Rmu_sc0000258.1_g000003 Rmu_sc0000258.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229220 Rroxscaffold_7G00189870 Rroxscaffold_7G00189880 Rroxscaffold_7G00190350
rosa_rugosa	Rorug06G0006400 Rorug06G0117000 Rorug06G0117100.1
rosa_samantha	Rh1DG021000 Rh2DG345500 Rh2DG346800 Rh3AG263900 Rh3CG365900 Rh3DG372000 Rh5CG269300 Rh6AG226300 Rh6BG230500 Rh6CG233600 Rh6DG224900 Rh7AG412300 Rh7CG321300 Rh7DG336100
rosa_wichuraiana	Rw0G018390 Rw3G029150 Rw5G034840 Rw6G019740 Rw6G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	680
AciI	CCGC	1 cut(s)	847
AclWI	GGATC	2 cut(s)	794, 807
AcoI	YGGCCR	2 cut(s)	99, 113
AcsI	RAATTY	1 cut(s)	814
AfaI	GTAC	3 cut(s)	17, 760, 934
AfiI	CCNNNNNNNGG	3 cut(s)	308, 626, 787
AflIII	ACRYGT	2 cut(s)	752, 892
AgsI	TTSAA	6 cut(s)	73, 199, 316, 568, 594, 880
AluBI	AGCT	3 cut(s)	76, 220, 646
AluI	AGCT	3 cut(s)	76, 220, 646
Alw26I	GTCTC	3 cut(s)	123, 658, 670
AlwI	GGATC	2 cut(s)	794, 807
Ama87I	CYCGRG	1 cut(s)	30
AoxI	GGCC	2 cut(s)	99, 113
ApeKI	GCWGC	1 cut(s)	469
ApoI	RAATTY	1 cut(s)	814
AspS9I	GGNCC	1 cut(s)	673
AsuHPI	GGTGA	2 cut(s)	46, 619
AvaI	CYCGRG	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	673
BalI	TGGCCA	1 cut(s)	101
BamHI	GGATCC	1 cut(s)	799
BauI	CACGAG	1 cut(s)	507
BbsI	GAAGAC	1 cut(s)	360
BbvCI	CCTCAGC	2 cut(s)	221, 227
BbvI	GCAGC	1 cut(s)	456
BccI	CCATC	3 cut(s)	130, 163, 790
BceAI	ACGGC	1 cut(s)	100
BciVI	GTATCC	1 cut(s)	454
BclI	TGATCA	1 cut(s)	735
BcoDI	GTCTC	3 cut(s)	123, 658, 670
BfaI	CTAG	2 cut(s)	240, 579
BfmI	CTRYAG	1 cut(s)	624
BfuI	GTATCC	1 cut(s)	454
BisI	GCNGC	1 cut(s)	470
BlsI	GCNGC	1 cut(s)	471
BmcAI	AGTACT	1 cut(s)	934
Bme18I	GGWCC	1 cut(s)	673
BmeT110I	CYCGRG	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	673
BmiI	GGNNCC	4 cut(s)	26, 110, 618, 801
BmsI	GCATC	2 cut(s)	799, 800
BpiI	GAAGAC	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
Bpu10I	CCTNAGC	2 cut(s)	221, 227
BpuEI	CTTGAG	2 cut(s)	50, 460
BsaBI	GATNNNNATC	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	29, 669
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 626, 787
Bse118I	RCCGGY	1 cut(s)	105
Bse1I	ACTGG	2 cut(s)	434, 940
Bse8I	GATNNNNATC	1 cut(s)	142
BseDI	CCNNGG	2 cut(s)	29, 669
BseGI	GGATG	1 cut(s)	155
BseJI	GATNNNNATC	1 cut(s)	142
BseLI	CCNNNNNNNGG	3 cut(s)	308, 626, 787
BseMII	CTCAG	4 cut(s)	212, 218, 852, 903
BseNI	ACTGG	2 cut(s)	434, 940
BseRI	GAGGAG	1 cut(s)	141
BseX3I	CGGCCG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	456
BseYI	CCCAGC	1 cut(s)	321
Bsh1285I	CGRYCG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	101, 115
BsiEI	CGRYCG	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	106, 112
BslFI	GGGAC	1 cut(s)	930
BslI	CCNNNNNNNGG	3 cut(s)	308, 626, 787
BsmAI	GTCTC	3 cut(s)	123, 658, 670
BsmBI	CGTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	930
BsnI	GGCC	2 cut(s)	101, 115
BsoBI	CYCGRG	1 cut(s)	30
Bsp143I	GATC	3 cut(s)	137, 735, 799
BspACI	CCGC	1 cut(s)	847
BspANI	GGCC	2 cut(s)	101, 115
BspCNI	CTCAG	4 cut(s)	213, 219, 853, 904
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	4 cut(s)	26, 110, 618, 801
BspMAI	CTGCAG	1 cut(s)	628
BspPI	GGATC	2 cut(s)	794, 807
BspQI	GCTCTTC	1 cut(s)	862
BsrFI	RCCGGY	1 cut(s)	105
BsrI	ACTGG	2 cut(s)	434, 940
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	29, 669
BssMI	GATC	3 cut(s)	137, 735, 799
BssSI	CACGAG	1 cut(s)	507
Bst2BI	CACGAG	1 cut(s)	507
Bst4CI	ACNGT	2 cut(s)	572, 835
Bst6I	CTCTTC	2 cut(s)	862, 874
BstC8I	GCNNGC	2 cut(s)	722, 745
BstDEI	CTNAG	5 cut(s)	221, 227, 296, 861, 912
BstF5I	GGATG	1 cut(s)	155
BstKTI	GATC	3 cut(s)	140, 738, 802
BstMAI	GTCTC	3 cut(s)	123, 658, 670
BstMBI	GATC	3 cut(s)	137, 735, 799
BstMCI	CGRYCG	1 cut(s)	116
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNSI	RCATGY	4 cut(s)	683, 756, 896, 945
BstSFI	CTRYAG	1 cut(s)	624
BstV1I	GCAGC	1 cut(s)	456
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	799
BstXI	CCANNNNNNTGG	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	799
BstZI	CGGCCG	1 cut(s)	113
BsuI	GTATCC	1 cut(s)	454
BsuRI	GGCC	2 cut(s)	101, 115
BtsCI	GGATG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	458, 745
Cac8I	GCNNGC	2 cut(s)	722, 745
CciI	TCATGA	1 cut(s)	805
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	673
Csp6I	GTAC	3 cut(s)	16, 759, 933
CviAII	CATG	6 cut(s)	265, 680, 753, 806, 893, 942
CviQI	GTAC	3 cut(s)	16, 759, 933
DdeI	CTNAG	5 cut(s)	221, 227, 296, 861, 912
DpnI	GATC	3 cut(s)	139, 737, 801
DpnII	GATC	3 cut(s)	137, 735, 799
DrdI	GACNNNNNNGTC	1 cut(s)	680
DseDI	GACNNNNNNGTC	1 cut(s)	680
EaeI	YGGCCR	2 cut(s)	99, 113
EagI	CGGCCG	1 cut(s)	113
Eam1104I	CTCTTC	2 cut(s)	862, 874
EarI	CTCTTC	2 cut(s)	862, 874
EciI	GGCGGA	1 cut(s)	836
EclXI	CGGCCG	1 cut(s)	113
Eco32I	GATATC	2 cut(s)	496, 829
Eco47I	GGWCC	1 cut(s)	673
Eco52I	CGGCCG	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	30
EcoRV	GATATC	2 cut(s)	496, 829
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	6 cut(s)	268, 683, 756, 809, 896, 945
FaqI	GGGAC	1 cut(s)	930
FatI	CATG	6 cut(s)	264, 679, 752, 805, 892, 941
FbaI	TGATCA	1 cut(s)	735
Fnu4HI	GCNGC	1 cut(s)	470
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	1 cut(s)	470
FspBI	CTAG	2 cut(s)	240, 579
GluI	GCNGC	1 cut(s)	470
GsaI	CCCAGC	1 cut(s)	325
HaeIII	GGCC	2 cut(s)	101, 115
HapII	CCGG	2 cut(s)	106, 112
Hin1II	CATG	6 cut(s)	268, 683, 756, 809, 896, 945
HinfI	GANTC	4 cut(s)	143, 590, 843, 863
HpaII	CCGG	2 cut(s)	106, 112
HphI	GGTGA	2 cut(s)	46, 619
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188I	TCNGA	5 cut(s)	142, 282, 670, 862, 913
Hpy188III	TCNNGA	5 cut(s)	135, 340, 477, 509, 806
Hpy8I	GTNNAC	1 cut(s)	416
Hpy99I	CGWCG	2 cut(s)	92, 136
HpyCH4III	ACNGT	2 cut(s)	572, 835
HpyCH4V	TGCA	7 cut(s)	205, 456, 533, 626, 708, 743, 941
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	5 cut(s)	221, 227, 296, 861, 912
Hsp92II	CATG	6 cut(s)	268, 683, 756, 809, 896, 945
Ksp22I	TGATCA	1 cut(s)	735
Kzo9I	GATC	3 cut(s)	137, 735, 799
LguI	GCTCTTC	1 cut(s)	862
LmnI	GCTCC	1 cut(s)	114
Lsp1109I	GCAGC	1 cut(s)	456
LweI	GCATC	2 cut(s)	799, 800
MaeI	CTAG	2 cut(s)	240, 579
MaeIII	GTNAC	2 cut(s)	581, 902
MalI	GATC	3 cut(s)	139, 737, 801
MboI	GATC	3 cut(s)	137, 735, 799
MboII	GAAGA	4 cut(s)	365, 849, 861, 937
MflI	RGATCY	1 cut(s)	799
MlsI	TGGCCA	1 cut(s)	101
MluCI	AATT	3 cut(s)	285, 484, 814
MluNI	TGGCCA	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	872
MmeI	TCCRAC	1 cut(s)	644
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MslI	CAYNNNNRTG	2 cut(s)	269, 411
Msp20I	TGGCCA	1 cut(s)	101
MspI	CCGG	2 cut(s)	106, 112
MwoI	GCNNNNNNNGC	1 cut(s)	211
NdeII	GATC	3 cut(s)	137, 735, 799
NlaIII	CATG	6 cut(s)	268, 683, 756, 809, 896, 945
NlaIV	GGNNCC	4 cut(s)	26, 110, 618, 801
NspI	RCATGY	4 cut(s)	683, 756, 896, 945
PagI	TCATGA	1 cut(s)	805
PciI	ACATGT	2 cut(s)	752, 892
PciSI	GCTCTTC	1 cut(s)	862
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PfeI	GAWTC	3 cut(s)	143, 590, 843
PflFI	GACNNNGTC	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	471
PleI	GAGTC	1 cut(s)	871
PpsI	GAGTC	1 cut(s)	871
PscI	ACATGT	2 cut(s)	752, 892
PspFI	CCCAGC	1 cut(s)	321
PspN4I	GGNNCC	4 cut(s)	26, 110, 618, 801
PspPI	GGNCC	1 cut(s)	673
PsrI	GAACNNNNNNTAC	2 cut(s)	8, 40
PstI	CTGCAG	1 cut(s)	628
PsuI	RGATCY	1 cut(s)	799
PsyI	GACNNNGTC	1 cut(s)	130
RsaI	GTAC	3 cut(s)	17, 760, 934
RsaNI	GTAC	3 cut(s)	16, 759, 933
RseI	CAYNNNNRTG	2 cut(s)	269, 411
SapI	GCTCTTC	1 cut(s)	862
SatI	GCNGC	1 cut(s)	470
Sau3AI	GATC	3 cut(s)	137, 735, 799
Sau96I	GGNCC	1 cut(s)	673
ScaI	AGTACT	1 cut(s)	934
SchI	GAGTC	1 cut(s)	872
SetI	ASST	7 cut(s)	26, 66, 78, 131, 222, 648, 841
SfaNI	GCATC	2 cut(s)	799, 800
SfcI	CTRYAG	1 cut(s)	624
SinI	GGWCC	1 cut(s)	673
SmiMI	CAYNNNNRTG	2 cut(s)	269, 411
SmlI	CTYRAG	2 cut(s)	65, 475
SmoI	CTYRAG	2 cut(s)	65, 475
Sse9I	AATT	3 cut(s)	285, 484, 814
SsiI	CCGC	1 cut(s)	847
SspMI	CTAG	2 cut(s)	240, 579
TaaI	ACNGT	2 cut(s)	572, 835
TaqI	TCGA	3 cut(s)	125, 134, 841
TasI	AATT	3 cut(s)	285, 484, 814
TatI	WGTACW	2 cut(s)	758, 932
TfiI	GAWTC	3 cut(s)	143, 590, 843
TscAI	CASTG	2 cut(s)	458, 745
TseI	GCWGC	1 cut(s)	469
TspDTI	ATGAA	3 cut(s)	275, 682, 938
TspRI	CASTG	2 cut(s)	458, 745
Tth111I	GACNNNGTC	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	673
XapI	RAATTY	1 cut(s)	814
XceI	RCATGY	4 cut(s)	683, 756, 896, 945
XspI	CTAG	2 cut(s)	240, 579
ZrmI	AGTACT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.