Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001641

Physical Location & Seq

Genomic Coordinates Reverse (-)

44579270 .. 44580485

Gene Structure 1216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G029150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCTCATTGCAGATGTAATGAACATGACTATGTATAATCTGATAATTGAGAGGCTTAGACCACTTGTGGGTTTGAAAGGCTGGGATTATTGTGTTCTCTGGAAGTTGAGTGAAGACCAAAGATTATGGATTGGTTGCTGTTGTTATGGGATTGATGAGGACACCCATAATGGTGGACAAGAACTTCTATTTCCAGTTTATCAAGTTTTTCAGTGCAAGGATACAATGCTGCTCTCAAGAACTAATTATTTTGATATCCTTATTGCTCGTGATTACAAAAACAGGATTTATGCAAAAACATTTATGTCAAACCAGCCCTGTTGGTTGAACTGTTCCTCTAGTAACAGAGATTCAAGTGCTATGCTGGTGATTTTGGTTCCAACTGCAGGAGGGTTTATGATTGAGCTGTTTGTCTCCAAAGATGTCTCCGAGGACCAGCATGTCATTGATTTCATCACAGCACAATGCAACATTTGGTGCGAGCAAGACACCCTGATCAGTGCAAGCAACACATGTAGTACAAACACCCCTGTATTTTCCCCATCAATGGCATCATTGGATCCTCATGATGCGAATTTGCCATACGATATCACAGTAGGTCGAATCCGCCTATGCTCTTCTGAGTCCTCTTCTCCATTGAACTTCCTACAACATGTCAGTAGTTACAACTCTGAGAATAGAATGAAGAATAGTACTGGTGCATGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

236

Amino Acids

26.73

Weight (kDa)

4.91

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	17 - 153	3.4e-08	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16910
fragaria_vesca	FvH4_2g15460 FvH4_2g15460 FvH4_2g15470
malus_domestica	MD05G1122900.v1.1 MD05G1123000.v1.1 MD10G1125700.v1.1
prunus_persica	Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166900_v2.0.a1
pyrus_communis	pycom05g11720 pycom05g11750 pycom10g10820
rosa_chinensis	RchiOBHm_Chr6g0278441 RchiOBHm_Chr6g0278471
rosa_laevigata	RLG00000013226 RLG00000013228 RLG00000013381
rosa_multiflora	Rmu_sc0000258.1_g000003 Rmu_sc0000258.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229220 Rroxscaffold_7G00189870 Rroxscaffold_7G00189880 Rroxscaffold_7G00190350
rosa_rugosa	Rorug06G0006400 Rorug06G0117000 Rorug06G0117100.1
rosa_samantha	Rh1DG021000 Rh2DG345500 Rh2DG346800 Rh3AG263900 Rh3CG365900 Rh3DG372000 Rh5CG269300 Rh6AG226300 Rh6BG230500 Rh6CG233600 Rh6DG224900 Rh7AG412300 Rh7CG321300 Rh7DG336100
rosa_wichuraiana	Rw0G018390 Rw3G029150 Rw5G034840 Rw6G019740 Rw6G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	440
AciI	CCGC	1 cut(s)	607
AclWI	GGATC	2 cut(s)	554, 567
AcsI	RAATTY	1 cut(s)	574
AfaI	GTAC	2 cut(s)	520, 694
AfiI	CCNNNNNNNGG	3 cut(s)	68, 386, 547
AflIII	ACRYGT	2 cut(s)	512, 652
AgsI	TTSAA	4 cut(s)	76, 328, 354, 640
AluBI	AGCT	1 cut(s)	406
AluI	AGCT	1 cut(s)	406
Alw26I	GTCTC	2 cut(s)	418, 430
AlwI	GGATC	2 cut(s)	554, 567
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	1 cut(s)	574
AspS9I	GGNCC	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	433
BamHI	GGATCC	1 cut(s)	559
BauI	CACGAG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	1 cut(s)	550
BciVI	GTATCC	1 cut(s)	214
BclI	TGATCA	1 cut(s)	495
BcoDI	GTCTC	2 cut(s)	418, 430
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	384
BfuI	GTATCC	1 cut(s)	214
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
BmcAI	AGTACT	1 cut(s)	694
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	2 cut(s)	378, 561
BmsI	GCATC	2 cut(s)	559, 560
BpiI	GAAGAC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 386, 547
Bse1I	ACTGG	2 cut(s)	194, 700
Bse3DI	GCAATG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	429
BseLI	CCNNNNNNNGG	3 cut(s)	68, 386, 547
BseMI	GCAATG	1 cut(s)	6
BseMII	CTCAG	2 cut(s)	612, 663
BseNI	ACTGG	2 cut(s)	194, 700
BseXI	GCAGC	1 cut(s)	216
BseYI	CCCAGC	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	690
BslI	CCNNNNNNNGG	3 cut(s)	68, 386, 547
BsmAI	GTCTC	2 cut(s)	418, 430
BsmFI	GGGAC	1 cut(s)	690
Bsp143I	GATC	2 cut(s)	495, 559
BspACI	CCGC	1 cut(s)	607
BspCNI	CTCAG	2 cut(s)	613, 664
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	2 cut(s)	378, 561
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	2 cut(s)	554, 567
BspQI	GCTCTTC	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	6
BsrI	ACTGG	2 cut(s)	194, 700
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	2 cut(s)	495, 559
BssSI	CACGAG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	332, 595
Bst6I	CTCTTC	2 cut(s)	622, 634
BstC8I	GCNNGC	2 cut(s)	482, 505
BstDEI	CTNAG	3 cut(s)	56, 621, 672
BstKTI	GATC	2 cut(s)	498, 562
BstMAI	GTCTC	2 cut(s)	418, 430
BstMBI	GATC	2 cut(s)	495, 559
BstNSI	RCATGY	4 cut(s)	443, 516, 656, 705
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	559
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	559
BsuI	GTATCC	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	218, 505
Cac8I	GCNNGC	2 cut(s)	482, 505
CciI	TCATGA	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	433
Csp6I	GTAC	2 cut(s)	519, 693
CviAII	CATG	6 cut(s)	25, 440, 513, 566, 653, 702
CviJI	RGCY	4 cut(s)	55, 81, 316, 406
CviKI_1	RGCY	4 cut(s)	55, 81, 316, 406
CviQI	GTAC	2 cut(s)	519, 693
DdeI	CTNAG	3 cut(s)	56, 621, 672
DpnI	GATC	2 cut(s)	497, 561
DpnII	GATC	2 cut(s)	495, 559
DrdI	GACNNNNNNGTC	1 cut(s)	440
DseDI	GACNNNNNNGTC	1 cut(s)	440
Eam1104I	CTCTTC	2 cut(s)	622, 634
EarI	CTCTTC	2 cut(s)	622, 634
EciI	GGCGGA	1 cut(s)	596
Eco32I	GATATC	2 cut(s)	256, 589
Eco47I	GGWCC	1 cut(s)	433
EcoRV	GATATC	2 cut(s)	256, 589
FaeI	CATG	6 cut(s)	28, 443, 516, 569, 656, 705
FaqI	GGGAC	1 cut(s)	690
FatI	CATG	6 cut(s)	24, 439, 512, 565, 652, 701
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	230
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	1 cut(s)	230
GsaI	CCCAGC	1 cut(s)	85
Hin1II	CATG	6 cut(s)	28, 443, 516, 569, 656, 705
HinfI	GANTC	3 cut(s)	350, 603, 623
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	4 cut(s)	42, 430, 622, 673
Hpy188III	TCNNGA	4 cut(s)	100, 237, 269, 566
Hpy8I	GTNNAC	1 cut(s)	176
HpyCH4III	ACNGT	2 cut(s)	332, 595
HpyCH4V	TGCA	7 cut(s)	11, 216, 293, 386, 468, 503, 701
HpyF3I	CTNAG	3 cut(s)	56, 621, 672
Hsp92II	CATG	6 cut(s)	28, 443, 516, 569, 656, 705
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	2 cut(s)	495, 559
LguI	GCTCTTC	1 cut(s)	622
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	2 cut(s)	559, 560
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	341, 662
MalI	GATC	2 cut(s)	497, 561
MboI	GATC	2 cut(s)	495, 559
MboII	GAAGA	4 cut(s)	125, 609, 621, 697
MflI	RGATCY	1 cut(s)	559
MluCI	AATT	3 cut(s)	45, 244, 574
MlyI	GAGTC	1 cut(s)	632
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	7 cut(s)	45, 151, 346, 383, 424, 573, 637
MslI	CAYNNNNRTG	2 cut(s)	29, 171
NdeII	GATC	2 cut(s)	495, 559
NlaIII	CATG	6 cut(s)	28, 443, 516, 569, 656, 705
NlaIV	GGNNCC	2 cut(s)	378, 561
NspI	RCATGY	4 cut(s)	443, 516, 656, 705
PagI	TCATGA	1 cut(s)	565
PciI	ACATGT	2 cut(s)	512, 652
PciSI	GCTCTTC	1 cut(s)	622
PfeI	GAWTC	2 cut(s)	350, 603
PkrI	GCNGC	1 cut(s)	231
PleI	GAGTC	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	631
PscI	ACATGT	2 cut(s)	512, 652
PspFI	CCCAGC	1 cut(s)	81
PspN4I	GGNNCC	2 cut(s)	378, 561
PspPI	GGNCC	1 cut(s)	433
PstI	CTGCAG	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	2 cut(s)	520, 694
RsaNI	GTAC	2 cut(s)	519, 693
RseI	CAYNNNNRTG	2 cut(s)	29, 171
SapI	GCTCTTC	1 cut(s)	622
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	2 cut(s)	495, 559
Sau96I	GGNCC	1 cut(s)	433
ScaI	AGTACT	1 cut(s)	694
SchI	GAGTC	1 cut(s)	632
SetI	ASST	2 cut(s)	408, 601
SfaNI	GCATC	2 cut(s)	559, 560
SfcI	CTRYAG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	433
SmiMI	CAYNNNNRTG	2 cut(s)	29, 171
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	3 cut(s)	45, 244, 574
SsiI	CCGC	1 cut(s)	607
SspMI	CTAG	1 cut(s)	339
TaaI	ACNGT	2 cut(s)	332, 595
TaqI	TCGA	1 cut(s)	601
TasI	AATT	3 cut(s)	45, 244, 574
TatI	WGTACW	2 cut(s)	518, 692
TfiI	GAWTC	2 cut(s)	350, 603
TscAI	CASTG	2 cut(s)	218, 505
TseI	GCWGC	1 cut(s)	229
TspDTI	ATGAA	3 cut(s)	35, 442, 698
TspRI	CASTG	2 cut(s)	218, 505
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	1 cut(s)	574
XceI	RCATGY	4 cut(s)	443, 516, 656, 705
XspI	CTAG	1 cut(s)	339
ZrmI	AGTACT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.