Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00819

Orthogroup ID

OG0001641

Physical Location & Seq

Genomic Coordinates Reverse (-)

16265 .. 16830

Gene Structure 566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G018390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCTGGAAAGAGATGGGACCCGAGTTTTGGTTCCAACTGCAGGAGGGTTTATGATTGAGCTGTTTGTCTCCAAAGATGTCTCCGAGGACCAGCATGTCATTGATTTCATCACAGCACAATGCAACATTTGGTGCGAGCAAGACACCCTGATCAGTGCAAGCAACACATGTAGTACAAACACCCCTGTATTTTCCCCATCAATGGCATCATTGGATCCTCATGATGCGAATTTGCCATACGATATCACAGTAGGTCGAATCCGCCTATGCTCTTCTGAGTCCTCTTCTCCATTAATTGAACTTCCTACAACATGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

106

Amino Acids

11.58

Weight (kDa)

4.24

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16910
fragaria_vesca	FvH4_2g15460 FvH4_2g15460 FvH4_2g15470
malus_domestica	MD05G1122900.v1.1 MD05G1123000.v1.1 MD10G1125700.v1.1
prunus_persica	Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166900_v2.0.a1
pyrus_communis	pycom05g11720 pycom05g11750 pycom10g10820
rosa_chinensis	RchiOBHm_Chr6g0278441 RchiOBHm_Chr6g0278471
rosa_laevigata	RLG00000013226 RLG00000013228 RLG00000013381
rosa_multiflora	Rmu_sc0000258.1_g000003 Rmu_sc0000258.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229220 Rroxscaffold_7G00189870 Rroxscaffold_7G00189880 Rroxscaffold_7G00190350
rosa_rugosa	Rorug06G0006400 Rorug06G0117000 Rorug06G0117100.1
rosa_samantha	Rh1DG021000 Rh2DG345500 Rh2DG346800 Rh3AG263900 Rh3CG365900 Rh3DG372000 Rh5CG269300 Rh6AG226300 Rh6BG230500 Rh6CG233600 Rh6DG224900 Rh7AG412300 Rh7CG321300 Rh7DG336100
rosa_wichuraiana	Rw0G018390 Rw3G029150 Rw5G034840 Rw6G019740 Rw6G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	2 cut(s)	209, 222
AcsI	RAATTY	1 cut(s)	229
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	3 cut(s)	28, 41, 202
AflIII	ACRYGT	2 cut(s)	167, 311
AgsI	TTSAA	1 cut(s)	299
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw26I	GTCTC	2 cut(s)	73, 85
AlwI	GGATC	2 cut(s)	209, 222
Ama87I	CYCGRG	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	229
ArsI	GACNNNNNNTTYG	2 cut(s)	10, 42
AseI	ATTAAT	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	18, 88
AvaI	CYCGRG	1 cut(s)	21
AvaII	GGWCC	2 cut(s)	18, 88
BamHI	GGATCC	1 cut(s)	214
BccI	CCATC	2 cut(s)	8, 205
BclI	TGATCA	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	73, 85
BfmI	CTRYAG	1 cut(s)	39
Bme18I	GGWCC	2 cut(s)	18, 88
BmeT110I	CYCGRG	1 cut(s)	21
BmgT120I	GGNCC	2 cut(s)	18, 88
BmiI	GGNNCC	4 cut(s)	19, 20, 33, 216
BmsI	GCATC	2 cut(s)	214, 215
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 41, 202
BseDI	CCNNGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	3 cut(s)	28, 41, 202
BseMII	CTCAG	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	3 cut(s)	28, 41, 202
BsmAI	GTCTC	2 cut(s)	73, 85
BsmFI	GGGAC	1 cut(s)	31
BsoBI	CYCGRG	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	150, 214
BspACI	CCGC	1 cut(s)	262
BspCNI	CTCAG	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	4 cut(s)	19, 20, 33, 216
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	2 cut(s)	209, 222
BspQI	GCTCTTC	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	2 cut(s)	150, 214
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	2 cut(s)	277, 289
BstC8I	GCNNGC	2 cut(s)	137, 160
BstDEI	CTNAG	1 cut(s)	276
BstKTI	GATC	2 cut(s)	153, 217
BstMAI	GTCTC	2 cut(s)	73, 85
BstMBI	GATC	2 cut(s)	150, 214
BstNSI	RCATGY	3 cut(s)	98, 171, 315
BstSFI	CTRYAG	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	2 cut(s)	137, 160
CciI	TCATGA	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	18, 88
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	4 cut(s)	95, 168, 221, 312
CviJI	RGCY	1 cut(s)	61
CviKI_1	RGCY	1 cut(s)	61
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	2 cut(s)	152, 216
DpnII	GATC	2 cut(s)	150, 214
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	2 cut(s)	277, 289
EarI	CTCTTC	2 cut(s)	277, 289
EciI	GGCGGA	1 cut(s)	251
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	2 cut(s)	18, 88
Eco88I	CYCGRG	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRV	GATATC	1 cut(s)	244
FaeI	CATG	4 cut(s)	98, 171, 224, 315
FaiI	YATR	7 cut(s)	53, 96, 169, 222, 238, 268, 313
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	4 cut(s)	94, 167, 220, 311
FbaI	TGATCA	1 cut(s)	150
Hin1II	CATG	4 cut(s)	98, 171, 224, 315
HinfI	GANTC	2 cut(s)	258, 278
Hpy188I	TCNGA	2 cut(s)	85, 277
Hpy188III	TCNNGA	1 cut(s)	221
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	3 cut(s)	41, 123, 158
HpyF3I	CTNAG	1 cut(s)	276
Hsp92II	CATG	4 cut(s)	98, 171, 224, 315
KflI	GGGWCCC	1 cut(s)	18
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	150, 214
LguI	GCTCTTC	1 cut(s)	277
LpnPI	CCDG	4 cut(s)	27, 104, 161, 198
LweI	GCATC	2 cut(s)	214, 215
MalI	GATC	2 cut(s)	152, 216
MboI	GATC	2 cut(s)	150, 214
MboII	GAAGA	2 cut(s)	264, 276
MflI	RGATCY	1 cut(s)	214
MluCI	AATT	2 cut(s)	229, 294
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	4 cut(s)	38, 79, 228, 292
MseI	TTAA	1 cut(s)	293
NdeII	GATC	2 cut(s)	150, 214
NlaIII	CATG	4 cut(s)	98, 171, 224, 315
NlaIV	GGNNCC	4 cut(s)	19, 20, 33, 216
NspI	RCATGY	3 cut(s)	98, 171, 315
PagI	TCATGA	1 cut(s)	220
PciI	ACATGT	2 cut(s)	167, 311
PciSI	GCTCTTC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	258
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PpuMI	RGGWCCY	1 cut(s)	18
PscI	ACATGT	2 cut(s)	167, 311
PshBI	ATTAAT	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	18
PspN4I	GGNNCC	4 cut(s)	19, 20, 33, 216
PspPI	GGNCC	2 cut(s)	18, 88
PspPPI	RGGWCCY	1 cut(s)	18
PstI	CTGCAG	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SapI	GCTCTTC	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	293
Sau3AI	GATC	2 cut(s)	150, 214
Sau96I	GGNCC	2 cut(s)	18, 88
SchI	GAGTC	1 cut(s)	287
SetI	ASST	2 cut(s)	63, 256
SfaNI	GCATC	2 cut(s)	214, 215
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	2 cut(s)	18, 88
Sse9I	AATT	2 cut(s)	229, 294
SsiI	CCGC	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	256
TasI	AATT	2 cut(s)	229, 294
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	258
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	160
VpaK11BI	GGWCC	2 cut(s)	18, 88
VspI	ATTAAT	1 cut(s)	293
XapI	RAATTY	1 cut(s)	229
XceI	RCATGY	3 cut(s)	98, 171, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.