Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001641

Physical Location & Seq

Genomic Coordinates Forward (+)

43494806 .. 43501398

Gene Structure 6593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG230500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3144 bp

ATGAACATGACGATGTATAATCTGATAATTGAGAGGCTTAGACCCCTTGTGGGTTTGAAAGGCTGGGATTATTGTGTTCTCTGGAAGTTAAGTGAAGACCAAAGGTTCATTGACTGGATTGGTTGCTGCTGTTCTGGGATTGATGAGGACACCCAGAATGGTGGACAAGAACTTCTGTTTCCAGCTTATCAAGTCTTTCAGTGCAGGGATACAATGCAGCACTCAAGAACTAATTCTTGTGATATCCTTTCTCGTCTTCCTTCTTCAATGCCCTTAGACTCTGGGATTTATGCAAAAACCATGATGTCAAACCAGCCCTGTTGGTTGAACTGCTCCTCTGGTAACAGAGATTCAAGTGCTATGATATTTCCTACTTACACAATGCAGGAAAGAGATGGGACCCTAGTTTTGGTTCCAACTGCAGGAGGGTTAATGATTGAGCTGTTCGTCTCCAAAGATGTCTCTGAGAACCAGCAAGTCATTGATTTCATCACAGCACAATGCAACATTTGGCGCGAGCAAGACACCCTGATCAGTGCAAGCAACACATGTAGTACAAACACCCCTCTACTTTCCCCATCAATGGCATCATTGGATCCTCATGATGCGAATTTGCCATACAATATCACAGTTGATCGAATCCGTCTATGCTCTTCTGAGTCCTCTTCTCCATTGAACTTCCTGCAACATGTCACTAGTTACAACTCTGAGAACAGAATGAGGAACAGTACTAGTGAATGTAATTATGACCAGGGTAATTCACATGAGTACTCTTTGGATCAGCCATTAGAAAACATGAAGCAACAAGGTACTCTGGATGATCAGGATTCGATAAAACCAGCAGACCATTCAGTTTCAGATTGCAGTGACCAAACTGATGACACAAATTATAAAACAAGAAATGGAAAAGAGCCTCAATCCAAAAACCTTGTTGCTGAGAGGAAGAGAAGGAAGAAGCTTAACGAAAAACTCTATAAACTTCGCTCTTTGGTTCCCAACATTTCTAAGATGGACAAGGCTTCGATTCTCAAGGATGCGATTGATTTTGTCAAGGACTTGCAGAGACAAGTGAAAGAACTCCAAGATGTGCTTGAACATAATTCAAATGAAGAAGGAGGAGCTAAGAGAACTTTTAATAGTATCTCTAGAAATCACAACAATTACCAGTCAGAGGGTCTGAATCAACATGGAATTTCCATGGCAAATAAACCAAAAAGTGACAACCCTCAAAACGGCTTTCGTGACTCGGATCATAATACTAATGAGAAGGGACAACAGCAGATGGAGCCACAAGTGGGAGTAACTCAGTTAGACGGCAACGAGTTCTTTGTGACAGTGTTCTGTGAGCAGAAGCCAGAAGGGTTTGTGAGACTGATGGAGGCATTGGATAGTTTAGGCTTGGAAGTGACTAATGCAAACGTTACTAGCTTCAGAAGCCTTGTCTCTAATGTGTTTAAAGTAGAGAAAAGGGACAGTGAAATACTGCAAGCTGATGAAGTGAGGGACTCTTTGCTAGAGATAACGCGGAATCCCTCGAAAGGGTACTGGCCTGAGATGGCGAAAACATCTGGGAATGATGTACTGCCCAAAATCTCGAGAGCAAGACAAACTACTCATATCATCAGCTGCAAGCTAGGTGTCATGAACAATATCATCATGTCAAATCTCATACCGAGGCTTAGACCCCTTGTGGGTTTGAAAGGATGGGATTTTTGTGTTGTCTGGAAACTTAGCGAAGACCAAAGGTTTGTTGAGTGGATGGATTGTTGCTGTTCGGGGACTGAAATTACTCAAGATGTTGGATATGAAGACCATCTTCTTTTTCCAGTAGTTTCTGCAGTCCTTCCTTGTAGGGATATCTTGTTACAGCATCCAAGAACCAGATCTTGTGATTTTCTTTCCAAAATGTCTTCTTCAGTTCCCCTAGATTCAGGGATTTATGCAGAGACTTTAATGTCAAACCAACCCAGTTGGTTAAACTTCTCTGACAGTAGTACATATTCGAGTACTAATGTAGAAGAAACTGTTGGGACCAGGGTTTTGATGCCAATACCAGGAGGACTAATTGAGCTTCTTGTTGCCAAACAAGTACTTGAAGACCAGAATGTTATCGATTTCATCACAGAGCAATACAACATCTCAATAGAACAGGATCATATTGGTACAAGCTTTGGGGTAAACTTGGACACAATGACTCATGATGAAATCCAATCAAAGCCAGTACTTGTAGACCACGAACAAATGGATTCCAGCAATCATGTTTTCTGCTCTGGCGATAATTCTGCCATGAACTTCTTGCAGCAGTTTAGTCACAACTTGGGAAACAGGATGAAGAACATTAGTTATAATGTCAATTCTTTTGAAGATTCATCACATGCACCATTTCTTTCTGATAAGCAAATGGAGCACCCATTTACTAATTGTTCGAAAAAAACTGGGTTTGATCAAGCAACGGAGGCAATGCAAAGGTCCATGATGATGAGTGAGACACAAGCCACACACCATATGCATATGCAATATATGGATCAGTCATTAGAACCAGGCATGGATCATGAGCTGGAGCAGGATGCCGGCAATAATGATAAGGACTCAAATATTATAAATGATGATGGGGGACATGCTACAGATTTGAACTCAGATTGCAGTGATCATGATCAGCTTGATGCTGAGGATGATGCAAAATATCGGAGGAGGAATGGAAAAGGGCAGGCCAAAAACCTTGTTGCAGAGAGAAAGAGAAGGAAGAAGCTTAATGACAGGCTCTATGAACTTAGGTCTTTAGTTCCCAATATTTCCAAGTTGGATAGAGCTTCTATTCTTGGGGATGCAATAGAGTATGTGATGGAGTTGCAGAACCAAGCTAAAATACTCCAAGATGAGCTTAATGATGATCATGATCACGAAGAAGTTCGCCATGTTCATGAAGGTGCTGCTAATAAGAACTGTGGCATCACTTTCCAACATAACAGTTTACAATCAGAGATTGACCAGAGTCAAAGTGGGGTTGACCTTAAAACTGAACAAAATGATCATAAAGCTCCAAATGGGTTTCATTTGGGAACATCAGGAGACGGTAGTGTCTCAAAACAAAGCCCCGATTCAGAAGTTATCCATGATCACAAGACACAGCAGATGGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

1047

Amino Acids

118.31

Weight (kDa)

5.04

Isoelectric Point (pI)

54.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	11 - 165	1.3e-15	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	311 - 354	9.9e-11	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	431 - 507	1.5e-11	Plant bHLH transcription factor, ACT-like domain
bHLH-MYC_N	PF14215	559 - 708	6.4e-18	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	908 - 951	3.5e-11	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16910
fragaria_vesca	FvH4_2g15460 FvH4_2g15460 FvH4_2g15470
malus_domestica	MD05G1122900.v1.1 MD05G1123000.v1.1 MD10G1125700.v1.1
prunus_persica	Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166900_v2.0.a1
pyrus_communis	pycom05g11720 pycom05g11750 pycom10g10820
rosa_chinensis	RchiOBHm_Chr6g0278441 RchiOBHm_Chr6g0278471
rosa_laevigata	RLG00000013226 RLG00000013228 RLG00000013381
rosa_multiflora	Rmu_sc0000258.1_g000003 Rmu_sc0000258.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229220 Rroxscaffold_7G00189870 Rroxscaffold_7G00189880 Rroxscaffold_7G00190350
rosa_rugosa	Rorug06G0006400 Rorug06G0117000 Rorug06G0117100.1
rosa_samantha	Rh1DG021000 Rh2DG345500 Rh2DG346800 Rh3AG263900 Rh3CG365900 Rh3DG372000 Rh5CG269300 Rh6AG226300 Rh6BG230500 Rh6CG233600 Rh6DG224900 Rh7AG412300 Rh7CG321300 Rh7DG336100
rosa_wichuraiana	Rw0G018390 Rw3G029150 Rw5G034840 Rw6G019740 Rw6G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	891, 2346, 2600
AasI	GACNNNNNNGTC	2 cut(s)	1954, 3077
AccI	GTMKAC	1 cut(s)	2229
AccII	CGCG	2 cut(s)	516, 1525
AciI	CCGC	1 cut(s)	1525
AclI	AACGTT	1 cut(s)	1419
AclWI	GGATC	7 cut(s)	590, 603, 786, 1257, 2160, 2532, 2556
AcsI	RAATTY	2 cut(s)	610, 1191
AcuI	CTGAAG	2 cut(s)	1414, 1899
AflIII	ACRYGT	2 cut(s)	548, 688
AhlI	ACTAGT	2 cut(s)	695, 731
AjnI	CCWGG	4 cut(s)	750, 2033, 2053, 2539
AjuI	GAANNNNNNNTTGG	2 cut(s)	2010, 2042
Alw21I	GWGCWC	1 cut(s)	2409
Alw26I	GTCTC	9 cut(s)	454, 466, 1057, 1363, 1447, 1940, 2480, 3063, 3085
AlwI	GGATC	7 cut(s)	590, 603, 786, 1257, 2160, 2532, 2556
Ama87I	CYCGRG	1 cut(s)	1594
AoxI	GGCC	2 cut(s)	1547, 2709
ApeKI	GCWGC	5 cut(s)	126, 217, 1626, 2299, 2930
ApoI	RAATTY	2 cut(s)	610, 1191
ArsI	GACNNNNNNTTYG	6 cut(s)	391, 423, 1730, 1762, 2023, 2055
Asp700I	GAANNNNTTC	2 cut(s)	232, 2907
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	3 cut(s)	399, 2031, 2469
AsuII	TTCGAA	1 cut(s)	2426
AvaI	CYCGRG	1 cut(s)	1594
AvaII	GGWCC	3 cut(s)	399, 2031, 2469
BamHI	GGATCC	1 cut(s)	595
BbsI	GAAGAC	6 cut(s)	102, 248, 1743, 1815, 1902, 2103
Bbv12I	GWGCWC	1 cut(s)	2409
BbvCI	CCTCAGC	1 cut(s)	2667
BbvI	GCAGC	5 cut(s)	113, 229, 1613, 2311, 2917
BceAI	ACGGC	2 cut(s)	1249, 1330
BcgI	CGANNNNNNTGC	2 cut(s)	2264, 2298
BciT130I	CCWGG	4 cut(s)	752, 2035, 2055, 2541
BciVI	GTATCC	1 cut(s)	202
BclI	TGATCA	9 cut(s)	531, 820, 2443, 2647, 2653, 2890, 2896, 3028, 3115
BcoDI	GTCTC	9 cut(s)	454, 466, 1057, 1363, 1447, 1940, 2480, 3063, 3085
BcuI	ACTAGT	2 cut(s)	695, 731
BfaI	CTAG	8 cut(s)	404, 696, 732, 1146, 1425, 1514, 1634, 1925
BfmI	CTRYAG	3 cut(s)	420, 1836, 2622
BfuI	GTATCC	1 cut(s)	202
BglII	AGATCT	1 cut(s)	1883
BisI	GCNGC	5 cut(s)	127, 218, 1627, 2300, 2931
BlsI	GCNGC	5 cut(s)	128, 219, 1628, 2301, 2932
BmcAI	AGTACT	5 cut(s)	730, 770, 2008, 2091, 2223
Bme1390I	CCNGG	4 cut(s)	752, 2035, 2055, 2541
Bme18I	GGWCC	3 cut(s)	399, 2031, 2469
BmeT110I	CYCGRG	1 cut(s)	1594
BmgT120I	GGNCC	3 cut(s)	399, 2031, 2469
BmiI	GGNNCC	7 cut(s)	400, 401, 414, 597, 993, 1287, 2032
BmrFI	CCNGG	4 cut(s)	752, 2035, 2055, 2541
BmrI	ACTGGG	2 cut(s)	1962, 2445
BmuI	ACTGGG	2 cut(s)	1962, 2445
BoxI	GACNNNNGTC	1 cut(s)	2991
BpiI	GAAGAC	6 cut(s)	102, 248, 1743, 1815, 1902, 2103
BpmI	CTGGAG	1 cut(s)	2579
Bpu10I	CCTNAGC	1 cut(s)	2667
Bpu14I	TTCGAA	1 cut(s)	2426
BpuEI	CTTGAG	3 cut(s)	208, 1013, 1776
Bsa29I	ATCGAT	1 cut(s)	2112
BsaBI	GATNNNNATC	2 cut(s)	2652, 2895
BsaJI	CCNNGG	4 cut(s)	751, 1197, 1673, 2034
Bse118I	RCCGGY	1 cut(s)	2570
Bse1I	ACTGG	7 cut(s)	119, 1165, 1550, 1826, 1968, 2219, 2440
Bse3DI	GCAATG	1 cut(s)	2466
Bse8I	GATNNNNATC	2 cut(s)	2652, 2895
BseBI	CCWGG	4 cut(s)	752, 2035, 2055, 2541
BseCI	ATCGAT	1 cut(s)	2112
BseDI	CCNNGG	4 cut(s)	751, 1197, 1673, 2034
BseGI	GGATG	9 cut(s)	823, 1039, 1709, 1764, 1870, 2334, 2572, 2677, 2830
BseJI	GATNNNNATC	2 cut(s)	2652, 2895
BseMI	GCAATG	1 cut(s)	2466
BseMII	CTCAG	8 cut(s)	456, 648, 699, 927, 1319, 1542, 2649, 2658
BseNI	ACTGG	7 cut(s)	119, 1165, 1550, 1826, 1968, 2219, 2440
BseRI	GAGGAG	3 cut(s)	325, 1131, 2704
BseXI	GCAGC	5 cut(s)	113, 229, 1613, 2311, 2917
BseYI	CCCAGC	1 cut(s)	63
BsgI	GTGCAG	1 cut(s)	223
Bsh1236I	CGCG	2 cut(s)	516, 1525
BshFI	GGCC	2 cut(s)	1549, 2711
BshVI	ATCGAT	1 cut(s)	2112
BsiHKAI	GWGCWC	1 cut(s)	2409
BsiHKCI	CYCGRG	1 cut(s)	1594
BsiSI	CCGG	1 cut(s)	2571
BslFI	GGGAC	7 cut(s)	412, 1284, 1484, 1517, 1792, 2044, 2628
BsmAI	GTCTC	9 cut(s)	454, 466, 1057, 1363, 1447, 1940, 2480, 3063, 3085
BsmBI	CGTCTC	2 cut(s)	454, 3063
BsmFI	GGGAC	7 cut(s)	412, 1284, 1484, 1517, 1792, 2044, 2628
BsnI	GGCC	2 cut(s)	1549, 2711
BsoBI	CYCGRG	1 cut(s)	1594
Bsp119I	TTCGAA	1 cut(s)	2426
Bsp1286I	GDGCHC	1 cut(s)	2409
Bsp19I	CCATGG	1 cut(s)	1197
BspACI	CCGC	1 cut(s)	1525
BspANI	GGCC	2 cut(s)	1549, 2711
BspCNI	CTCAG	8 cut(s)	457, 649, 700, 928, 1318, 1543, 2648, 2659
BspDI	ATCGAT	1 cut(s)	2112
BspFNI	CGCG	2 cut(s)	516, 1525
BspHI	TCATGA	7 cut(s)	601, 1641, 2197, 2551, 2650, 2893, 2920
BspLI	GGNNCC	7 cut(s)	400, 401, 414, 597, 993, 1287, 2032
BspMAI	CTGCAG	2 cut(s)	424, 1840
BspPI	GGATC	7 cut(s)	590, 603, 786, 1257, 2160, 2532, 2556
BspQI	GCTCTTC	1 cut(s)	658
BspT104I	TTCGAA	1 cut(s)	2426
BsrDI	GCAATG	1 cut(s)	2466
BsrFI	RCCGGY	1 cut(s)	2570
BsrI	ACTGG	7 cut(s)	119, 1165, 1550, 1826, 1968, 2219, 2440
BssAI	RCCGGY	1 cut(s)	2570
BssECI	CCNNGG	4 cut(s)	751, 1197, 1673, 2034
BssT1I	CCWWGG	1 cut(s)	1197
Bst2UI	CCWGG	4 cut(s)	752, 2035, 2055, 2541
Bst4CI	ACNGT	9 cut(s)	631, 728, 1336, 1475, 1991, 2026, 2945, 2969, 3074
Bst6I	CTCTTC	3 cut(s)	658, 670, 938
BstBI	TTCGAA	1 cut(s)	2426
BstC8I	GCNNGC	6 cut(s)	518, 541, 1488, 1631, 2572, 2709
BstDSI	CCRYGG	1 cut(s)	1197
BstF5I	GGATG	9 cut(s)	823, 1039, 1709, 1764, 1870, 2334, 2572, 2677, 2830
BstFNI	CGCG	2 cut(s)	516, 1525
BstHHI	GCGC	1 cut(s)	516
BstMAI	GTCTC	9 cut(s)	454, 466, 1057, 1363, 1447, 1940, 2480, 3063, 3085
BstMWI	GCNNNNNNNGC	4 cut(s)	1285, 1434, 2404, 2456
BstNI	CCWGG	4 cut(s)	752, 2035, 2055, 2541
BstNSI	RCATGY	4 cut(s)	552, 692, 2378, 2621
BstPAI	GACNNNNGTC	1 cut(s)	2991
BstSCI	CCNGG	4 cut(s)	750, 2033, 2053, 2539
BstSFI	CTRYAG	3 cut(s)	420, 1836, 2622
BstUI	CGCG	2 cut(s)	516, 1525
BstV1I	GCAGC	5 cut(s)	113, 229, 1613, 2311, 2917
BstV2I	GAAGAC	6 cut(s)	102, 248, 1743, 1815, 1902, 2103
BstX2I	RGATCY	2 cut(s)	595, 1883
BstXI	CCANNNNNNTGG	1 cut(s)	161
BstYI	RGATCY	2 cut(s)	595, 1883
Bsu15I	ATCGAT	1 cut(s)	2112
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	1549, 2711
BsuTUI	ATCGAT	1 cut(s)	2112
BtgI	CCRYGG	1 cut(s)	1197
BtsCI	GGATG	9 cut(s)	823, 1039, 1709, 1764, 1870, 2334, 2572, 2677, 2830
BtsI	GCAGTG	2 cut(s)	871, 2650
BtsIMutI	CAGTG	6 cut(s)	206, 541, 871, 1341, 1480, 2650
Cac8I	GCNNGC	6 cut(s)	518, 541, 1488, 1631, 2572, 2709
CciI	TCATGA	7 cut(s)	601, 1641, 2197, 2551, 2650, 2893, 2920
CfoI	GCGC	1 cut(s)	516
Cfr10I	RCCGGY	1 cut(s)	2570
Cfr13I	GGNCC	3 cut(s)	399, 2031, 2469
ClaI	ATCGAT	1 cut(s)	2112
DraI	TTTAAA	1 cut(s)	1456
DrdI	GACNNNNNNGTC	2 cut(s)	1954, 3077
DseDI	GACNNNNNNGTC	2 cut(s)	1954, 3077
Eam1104I	CTCTTC	3 cut(s)	658, 670, 938
EarI	CTCTTC	3 cut(s)	658, 670, 938
Eco130I	CCWWGG	1 cut(s)	1197
Eco32I	GATATC	2 cut(s)	244, 1858
Eco47I	GGWCC	3 cut(s)	399, 2031, 2469
Eco57I	CTGAAG	2 cut(s)	1414, 1899
Eco88I	CYCGRG	1 cut(s)	1594
EcoO109I	RGGNCCY	1 cut(s)	399
EcoRII	CCWGG	4 cut(s)	750, 2033, 2053, 2539
EcoRV	GATATC	2 cut(s)	244, 1858
EcoT14I	CCWWGG	1 cut(s)	1197
EcoT22I	ATGCAT	1 cut(s)	2511
ErhI	CCWWGG	1 cut(s)	1197
Esp3I	CGTCTC	2 cut(s)	454, 3063
FalI	AAGNNNNNCTT	6 cut(s)	1074, 1106, 1800, 1832, 2865, 2897
FaqI	GGGAC	7 cut(s)	412, 1284, 1484, 1517, 1792, 2044, 2628
FauNDI	CATATG	2 cut(s)	2505, 2511
FbaI	TGATCA	9 cut(s)	531, 820, 2443, 2647, 2653, 2890, 2896, 3028, 3115
FblI	GTMKAC	1 cut(s)	2229
Fnu4HI	GCNGC	5 cut(s)	127, 218, 1627, 2300, 2931
FokI	GGATG	9 cut(s)	830, 1046, 1716, 1771, 1857, 2341, 2579, 2684, 2837
Fsp4HI	GCNGC	5 cut(s)	127, 218, 1627, 2300, 2931
FspBI	CTAG	8 cut(s)	404, 696, 732, 1146, 1425, 1514, 1634, 1925
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	5 cut(s)	127, 218, 1627, 2300, 2931
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	2579
HaeIII	GGCC	2 cut(s)	1549, 2711
HapII	CCGG	1 cut(s)	2571
HhaI	GCGC	1 cut(s)	516
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HincII	GTYRAC	1 cut(s)	3007
HindII	GTYRAC	1 cut(s)	3007
HindIII	AAGCTT	3 cut(s)	956, 2167, 2747
HpaII	CCGG	1 cut(s)	2571
Hpy166II	GTNNAC	5 cut(s)	164, 2179, 2230, 2972, 3007
Hpy8I	GTNNAC	5 cut(s)	164, 2179, 2230, 2972, 3007
HpyAV	CCTTC	8 cut(s)	270, 942, 1106, 1261, 1352, 1853, 2733, 2918
HpyCH4III	ACNGT	9 cut(s)	631, 728, 1336, 1475, 1991, 2026, 2945, 2969, 3074
HpyCH4IV	ACGT	1 cut(s)	1419
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1285, 1434, 2404, 2456
HpySE526I	ACGT	1 cut(s)	1419
HspAI	GCGC	1 cut(s)	514
KflI	GGGWCCC	1 cut(s)	399
KroI	GCCGGC	1 cut(s)	2570
KroNI	GCCGGC	1 cut(s)	2572
Ksp22I	TGATCA	9 cut(s)	531, 820, 2443, 2647, 2653, 2890, 2896, 3028, 3115
LguI	GCTCTTC	1 cut(s)	658
LmnI	GCTCC	6 cut(s)	338, 1118, 1285, 2404, 2560, 3043
Lsp1109I	GCAGC	5 cut(s)	113, 229, 1613, 2311, 2917
MaeI	CTAG	8 cut(s)	404, 696, 732, 1146, 1425, 1514, 1634, 1925
MaeII	ACGT	1 cut(s)	1419
MflI	RGATCY	2 cut(s)	595, 1883
MhlI	GDGCHC	1 cut(s)	2409
MlyI	GAGTC	7 cut(s)	272, 668, 1238, 1499, 2188, 2582, 3001
MmeI	TCCRAC	4 cut(s)	440, 1780, 2781, 2983
Mph1103I	ATGCAT	1 cut(s)	2511
MroNI	GCCGGC	1 cut(s)	2570
MroXI	GAANNNNTTC	2 cut(s)	232, 2907
MslI	CAYNNNNRTG	4 cut(s)	11, 2477, 2919, 2925
MspA1I	CMGCKG	1 cut(s)	1626
MspI	CCGG	1 cut(s)	2571
MspR9I	CCNGG	4 cut(s)	752, 2035, 2055, 2541
MvaI	CCWGG	4 cut(s)	752, 2035, 2055, 2541
MvnI	CGCG	2 cut(s)	516, 1525
MwoI	GCNNNNNNNGC	4 cut(s)	1285, 1434, 2404, 2456
NaeI	GCCGGC	1 cut(s)	2572
NcoI	CCATGG	1 cut(s)	1197
NdeI	CATATG	2 cut(s)	2505, 2511
NgoMIV	GCCGGC	1 cut(s)	2570
NlaIV	GGNNCC	7 cut(s)	400, 401, 414, 597, 993, 1287, 2032
NmuCI	GTSAC	7 cut(s)	691, 866, 1217, 1241, 1330, 1405, 2309
NsiI	ATGCAT	1 cut(s)	2511
NspI	RCATGY	4 cut(s)	552, 692, 2378, 2621
NspV	TTCGAA	1 cut(s)	2426
PaeR7I	CTCGAG	1 cut(s)	1594
PagI	TCATGA	7 cut(s)	601, 1641, 2197, 2551, 2650, 2893, 2920
PciI	ACATGT	2 cut(s)	548, 688
PciSI	GCTCTTC	1 cut(s)	658
PdiI	GCCGGC	1 cut(s)	2572
PdmI	GAANNNNTTC	2 cut(s)	232, 2907
PkrI	GCNGC	5 cut(s)	128, 219, 1628, 2301, 2932
PleI	GAGTC	7 cut(s)	272, 667, 1238, 1499, 2188, 2582, 3000
PpsI	GAGTC	7 cut(s)	272, 667, 1238, 1499, 2188, 2582, 3000
PpuMI	RGGWCCY	1 cut(s)	399
PscI	ACATGT	2 cut(s)	548, 688
PshAI	GACNNNNGTC	1 cut(s)	2991
PsiI	TTATAA	3 cut(s)	891, 2346, 2600
Psp1406I	AACGTT	1 cut(s)	1419
Psp5II	RGGWCCY	1 cut(s)	399
Psp6I	CCWGG	4 cut(s)	750, 2033, 2053, 2539
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	4 cut(s)	750, 2033, 2053, 2539
PspN4I	GGNNCC	7 cut(s)	400, 401, 414, 597, 993, 1287, 2032
PspPI	GGNCC	3 cut(s)	399, 2031, 2469
PspPPI	RGGWCCY	1 cut(s)	399
PstI	CTGCAG	2 cut(s)	424, 1840
PsuI	RGATCY	2 cut(s)	595, 1883
PvuII	CAGCTG	1 cut(s)	1626
RseI	CAYNNNNRTG	4 cut(s)	11, 2477, 2919, 2925
SapI	GCTCTTC	1 cut(s)	658
SatI	GCNGC	5 cut(s)	127, 218, 1627, 2300, 2931
Sau96I	GGNCC	3 cut(s)	399, 2031, 2469
ScaI	AGTACT	5 cut(s)	730, 770, 2008, 2091, 2223
SchI	GAGTC	7 cut(s)	272, 668, 1238, 1499, 2188, 2582, 3001
ScrFI	CCNGG	4 cut(s)	752, 2035, 2055, 2541
SduI	GDGCHC	1 cut(s)	2409
SfcI	CTRYAG	3 cut(s)	420, 1836, 2622
Sfr274I	CTCGAG	1 cut(s)	1594
SfuI	TTCGAA	1 cut(s)	2426
SinI	GGWCC	3 cut(s)	399, 2031, 2469
SlaI	CTCGAG	1 cut(s)	1594
SmiMI	CAYNNNNRTG	4 cut(s)	11, 2477, 2919, 2925
SmlI	CTYRAG	4 cut(s)	223, 1028, 1594, 1791
SmoI	CTYRAG	4 cut(s)	223, 1028, 1594, 1791
SpeI	ACTAGT	2 cut(s)	695, 731
SsiI	CCGC	1 cut(s)	1525
SspI	AATATT	2 cut(s)	2596, 2791
SspMI	CTAG	8 cut(s)	404, 696, 732, 1146, 1425, 1514, 1634, 1925
StyD4I	CCNGG	4 cut(s)	750, 2033, 2053, 2539
StyI	CCWWGG	1 cut(s)	1197
TaaI	ACNGT	9 cut(s)	631, 728, 1336, 1475, 1991, 2026, 2945, 2969, 3074
TaiI	ACGT	1 cut(s)	1422
TaqI	TCGA	8 cut(s)	637, 830, 1022, 1535, 1595, 2003, 2112, 2426
TatI	WGTACW	8 cut(s)	554, 728, 768, 1579, 1994, 2006, 2089, 2221
TscAI	CASTG	6 cut(s)	206, 541, 871, 1341, 1480, 2650
TseFI	GTSAC	7 cut(s)	691, 866, 1217, 1241, 1330, 1405, 2309
TseI	GCWGC	5 cut(s)	126, 217, 1626, 2299, 2930
Tsp45I	GTSAC	7 cut(s)	691, 866, 1217, 1241, 1330, 1405, 2309
TspGWI	ACGGA	2 cut(s)	632, 2468
TspRI	CASTG	6 cut(s)	206, 541, 871, 1341, 1480, 2650
VpaK11BI	GGWCC	3 cut(s)	399, 2031, 2469
XapI	RAATTY	2 cut(s)	610, 1191
XbaI	TCTAGA	1 cut(s)	1145
XceI	RCATGY	4 cut(s)	552, 692, 2378, 2621
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2996
XhoI	CTCGAG	1 cut(s)	1594
XmiI	GTMKAC	1 cut(s)	2229
XmnI	GAANNNNTTC	2 cut(s)	232, 2907
XspI	CTAG	8 cut(s)	404, 696, 732, 1146, 1425, 1514, 1634, 1925
ZrmI	AGTACT	5 cut(s)	730, 770, 2008, 2091, 2223
Zsp2I	ATGCAT	1 cut(s)	2511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.