Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001641

Physical Location & Seq

Genomic Coordinates Forward (+)

39688485 .. 39695881

Gene Structure 7397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG233600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3510 bp

ATGAACATGACGATATATAATCTGATAATTGAGAGGCTTAGACCCCTTGTGGGTTTGAAAGGCTGGGATTATTGTGTTCTCTGGAAATTAAGTGAAGACCAAAGGTTCCTTGACTGGATTGGTTGCTGCTGTTCTGGGATTGATGAGGACACCCAGAATGGTGGACAAGAACTTCTGTTTCCAGCTTATCAAGTCTTTCAGTGCAGGGATACAATGCAGCACTCAAGAACTAATTCTTGTGATATCCTTTCTCATCTTCCTTCTTCAATGCCCTTAGACTCTGGGATTTATGCAAAAACCATGATGTCAAACCAGCCCTGTTGGTTGAACTGCTCCTCTGGTAACAGAGATTCAAGTGCTATGCTAGAAAGAGATGGGACCCTACTTTTGGTTCCAACTGCAGGAGGATTAATGATTGAGCTGTTCGTCTCCAAAGATGTCTCTGAGAACCAGCAAGTCATTGATTTCATCACAGCACAATGCAACATTTGGCGCGAGCAAGACACCCTGATCAGTGCAAGCAACACATGTAGTACAAACACCCCTGTACTTTCCCCATCAATGGCATCATTGGATCCTCATGATGCGAATTTGCCATACGATATCACAGTTGATCGAATCCGCCTATGCTCTTCTGAGTCCTCTTCTCCATTGAACTTCCTGCAACATGTCACTAGTTACAACTCTGAGAACAGAATGAAGAACAGTACTAGTGAATGCAATTATGACCAGGGTAATTCACATGAGTACTCTTTGGACCAGCCATTAGAAAACATGGAGCAACAAGGTACTCTGGATTATCAGGATTCGATAAAACCAGCAGACCATTCAGTTTCAGATTGCAGTGACCAAACTGATGACACAAATTATAAAACAAGAAATGGAAAAGAGCCTCAATCCAAAAACCTTGTTGCTGAGAGGAAGAGAAGGAAGAAGCTTAACGAAAAACTCTATAAACTTCGCTCTTTGGTTCCCAACATTTCTAAGATGGACAAGGCTTCGATTCTCAAGGATGCGATTGATTTTGTCAAGGACTTGCAGAGACAAGTGAAAGAACTCCAAGATGTGCTTGAACATAATTCAAATGAAGAAGGAGGAGCTAAGAGAACTTTTAATAGTATCTCTGGAAATCACAACAATTACCAGTCAGAGGGTCTGAATCAACATGGAATTTCCATGGCAAATAAACCAAAAAGTGACAACCCTCAAAACGGCTTTCGTGACTCGGATCATAATACTAATGAGAAGGGACAACAGCAGATGGAGCCACAAGTGGGAGTAACTCAGTTAGACGGCAACGAGTTCTTTGTGACAGTGTTCTGTGAGCAGAAGCCAGAAGGATTTGTGAGACTGATGGAGGCATTGGATAGTTTAGGCTTGGAAGTGACTAATGCAAACGTTACTAGCTTCAGAAGCCTTGTCTCTAATGTGTTTAAAGTAGAGAAAAGGGACAGTGAAATACTGCAAGCTGATGAAGTGAGGGACTCTTTGCTGGAGATAACGCGGAATCCCTCGAAAGGGTACTGGCCTGAGATGGCGAAAGCATCTGGGAATGATGTACTGCCCAAAATCTCGAGAGCAAGACAAACTACTCATATCATCAGCTGCAAGCTAGGTGTCATGAACAATATCATCATGTCAAATCTCATACCGAGGCTTAGACCCCTTGTGGGTTTGAAAGGATGGGATTTTTGTGTTGTCTGGAAACTTAGTGAAGACCAAAGGTTTGTTGAGTGGATGGATTGTTGCTGTTCGGGGACTGAAATTACTCAAGATGTTGGATATGAAGACCATCTTCTTTTTCCAGTAGTTTCTGCAGTCCTTCCTTGTAGGGATACCTTGTTACAGCATCCAAGAACCAGATCTTGTGATTTTCTTTCCAAAATGTCTTCTTCAGTTCCCCTAGATTCCGGGATTTATGCAGAGGCTTTAATGTCAAACCAACCCAGTTGGTTAAACTTCTCTGACAGTAGCACATATTCGAGTACTAATGTAGAAGAAACTGTTGGGACCAGGGTTTTGATGCCAATACCAGGAGGACTAATTGAGCTTCTTGTTGCCAAACAAGTACTTGAAGACCAGCATGTTATCGATTTCATCACAGAGCAATACAACATCTCAATAGAACAGGATCATATTGGTACAAGCTTTGGGGTAAAGTTGGACACAATGACTCATGATGAAATCCAATCAAAGCAAGTACTTTTAGACCACGAACAAATGGATCCCAGCAATCATGTTTTCTGCTCTAGCGATAATTCTGCCATGAACTTCTTGCAGCAGTTTAGTCACAACTTGGGAAACAGGATGAAGAACATTAGTTATGATGTCAATTCTTTTGAAGATTCATCACATGCACCATTTCTTTCTGATAAGCAAATGGAGCACCCATTTAATAATTGTTCGAAAAAAACTGGGTTTGATCAAGCAACGGAGGCAATGCAAAGGTCCATGATGATGGGTGAGACACAAGCCACACACCATATGCACATGCAATATATGGATCAGTCATTAGAACGAGGCATGGATCATGAGCTGGAGCAGGATGCCGGCAATAATGATAAGGACTCAAATATTATAAATGATGATGGGGGACATGCTACAGATTTGAACTCAGATTGCAGTGATCATGATCAGCTTGATCCTGAGGATGATGCAAAATATCGGAGGAGGAACGGAAAAGGGCAGGCCAAAAACCTTGTTGCAGAGAGAAAGAGAAGGAAGAAGCTTAATGACAGGCTCTATGAACTTAGGTCTTTAGTTCCCAATATTTCCAAGTTGGATAGGGCTTCTATTCTTGGGGATGCAATAGAGTATGTGATGGAGTTGCAGAACCAAGCTAAAAAACTTCAAGATGAGCTTGATGATGATCATGATCACGAAGAAGTTCGCCATGTTCATGAAGGTGCTGCTAATAAGAACTGTGGCATCACTTTCCAACATAACAGTTTACAATCAGAGATTGATCAGAGTCAAAGTGGGGTTGACCTTAAAACTGAGCAAAATGATCATAAAGCTCCAAATGGGTTTCATTTGGGAACATCAGGAGATGGTAGTGTCTCAAAACAAAGCCCCGATTCAGAAGTTATCCACGATCACAAGACACAGCAGATGGAGCCCCAAGTGGAAGTAGCTCAAATAGATGGGAATCAGTTCTTTGTGAAAGTATTCTGTGAGCACAAGCCTGGTGGATTTGTGAGATTGATGGAGGCATTGAGCTCTCTGAGCCTGGAAGTTACTAATGCCAATGTAACTAGCTTCAGATGCCTCGTCTCTAATGTCTTCATCGTAGAGAAGAAGGATAGTGAACTAGTTGAAGCTGATGAAGTGAGAGACTCGTTGCTAGAGCTAACAAGGAACCCATTAAAATGGCGTAGTGAGGAAATGGCAAAAGCATCAGAGATTGGGATTGGCTTGGATAACAACCACCACCATCATCCCCATCACCAAAACCTCCACAACCACCATTTCAGTCCCTTCCACTTACACCATCTTCCTACTGAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

1169

Amino Acids

132.19

Weight (kDa)

5.17

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	11 - 158	6.5e-16	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	304 - 347	1.1e-10	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	424 - 500	1.7e-11	Plant bHLH transcription factor, ACT-like domain
bHLH-MYC_N	PF14215	552 - 701	2e-18	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	901 - 944	4e-11	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	1041 - 1115	1.3e-11	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16910
fragaria_vesca	FvH4_2g15460 FvH4_2g15460 FvH4_2g15470
malus_domestica	MD05G1122900.v1.1 MD05G1123000.v1.1 MD10G1125700.v1.1
prunus_persica	Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166900_v2.0.a1
pyrus_communis	pycom05g11720 pycom05g11750 pycom10g10820
rosa_chinensis	RchiOBHm_Chr6g0278441 RchiOBHm_Chr6g0278471
rosa_laevigata	RLG00000013226 RLG00000013228 RLG00000013381
rosa_multiflora	Rmu_sc0000258.1_g000003 Rmu_sc0000258.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229220 Rroxscaffold_7G00189870 Rroxscaffold_7G00189880 Rroxscaffold_7G00190350
rosa_rugosa	Rorug06G0006400 Rorug06G0117000 Rorug06G0117100.1
rosa_samantha	Rh1DG021000 Rh2DG345500 Rh2DG346800 Rh3AG263900 Rh3CG365900 Rh3DG372000 Rh5CG269300 Rh6AG226300 Rh6BG230500 Rh6CG233600 Rh6DG224900 Rh7AG412300 Rh7CG321300 Rh7DG336100
rosa_wichuraiana	Rw0G018390 Rw3G029150 Rw5G034840 Rw6G019740 Rw6G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	870, 2579
AccII	CGCG	2 cut(s)	495, 1504
AciI	CCGC	2 cut(s)	622, 1504
AclI	AACGTT	1 cut(s)	1398
AclWI	GGATC	9 cut(s)	569, 582, 1236, 2139, 2219, 2232, 2511, 2535, 2636
AcsI	RAATTY	2 cut(s)	589, 1170
AcuI	CTGAAG	3 cut(s)	1393, 1878, 3244
AflIII	ACRYGT	2 cut(s)	527, 667
AhlI	ACTAGT	3 cut(s)	674, 710, 3310
AjnI	CCWGG	5 cut(s)	729, 2012, 2032, 3184, 3228
AjuI	GAANNNNNNNTTGG	2 cut(s)	1989, 2021
Alw21I	GWGCWC	3 cut(s)	2388, 3180, 3221
Alw26I	GTCTC	9 cut(s)	433, 445, 1036, 1342, 1426, 2459, 3064, 3277, 3327
AlwI	GGATC	9 cut(s)	569, 582, 1236, 2139, 2219, 2232, 2511, 2535, 2636
Ama87I	CYCGRG	1 cut(s)	1573
AoxI	GGCC	2 cut(s)	1526, 2688
ApeKI	GCWGC	5 cut(s)	126, 217, 1605, 2278, 2909
ApoI	RAATTY	2 cut(s)	589, 1170
ArsI	GACNNNNNNTTYG	6 cut(s)	370, 402, 1709, 1741, 2002, 2034
AseI	ATTAAT	1 cut(s)	410
Asp700I	GAANNNNTTC	4 cut(s)	232, 2886, 3152, 3167
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	4 cut(s)	378, 757, 2010, 2448
AsuC2I	CCSGG	1 cut(s)	1912
AsuHPI	GGTGA	2 cut(s)	2474, 3437
AsuII	TTCGAA	1 cut(s)	2405
AvaI	CYCGRG	1 cut(s)	1573
AvaII	GGWCC	4 cut(s)	378, 757, 2010, 2448
AxyI	CCTNAGG	1 cut(s)	2646
BamHI	GGATCC	2 cut(s)	574, 2224
BanII	GRGCYC	2 cut(s)	3120, 3221
BbsI	GAAGAC	6 cut(s)	102, 1722, 1794, 1881, 2082, 3274
Bbv12I	GWGCWC	3 cut(s)	2388, 3180, 3221
BbvI	GCAGC	5 cut(s)	113, 229, 1592, 2290, 2896
BceAI	ACGGC	2 cut(s)	1228, 1309
BcgI	CGANNNNNNTGC	2 cut(s)	2243, 2277
BciT130I	CCWGG	5 cut(s)	731, 2014, 2034, 3186, 3230
BciVI	GTATCC	2 cut(s)	202, 1828
BclI	TGATCA	8 cut(s)	510, 2422, 2626, 2632, 2869, 2875, 2965, 3007
BcnI	CCSGG	1 cut(s)	1912
BcoDI	GTCTC	9 cut(s)	433, 445, 1036, 1342, 1426, 2459, 3064, 3277, 3327
BcuI	ACTAGT	3 cut(s)	674, 710, 3310
BfmI	CTRYAG	3 cut(s)	399, 1815, 2601
BfuI	GTATCC	2 cut(s)	202, 1828
BglII	AGATCT	1 cut(s)	1862
BisI	GCNGC	5 cut(s)	127, 218, 1606, 2279, 2910
BlsI	GCNGC	5 cut(s)	128, 219, 1607, 2280, 2911
BmcAI	AGTACT	5 cut(s)	709, 749, 1987, 2070, 2202
Bme1390I	CCNGG	6 cut(s)	731, 1912, 2014, 2034, 3186, 3230
Bme18I	GGWCC	4 cut(s)	378, 757, 2010, 2448
BmeT110I	CYCGRG	1 cut(s)	1573
BmgT120I	GGNCC	4 cut(s)	378, 757, 2010, 2448
BmrFI	CCNGG	6 cut(s)	731, 1912, 2014, 2034, 3186, 3230
BmrI	ACTGGG	2 cut(s)	1941, 2424
BmuI	ACTGGG	2 cut(s)	1941, 2424
BpiI	GAAGAC	6 cut(s)	102, 1722, 1794, 1881, 2082, 3274
BpmI	CTGGAG	2 cut(s)	1514, 2558
Bpu14I	TTCGAA	1 cut(s)	2405
BpuEI	CTTGAG	3 cut(s)	208, 992, 1755
BpuMI	CCSGG	1 cut(s)	1912
Bsa29I	ATCGAT	1 cut(s)	2091
BsaBI	GATNNNNATC	4 cut(s)	2631, 2868, 2874, 3147
BsaJI	CCNNGG	4 cut(s)	730, 1176, 1652, 2013
Bse118I	RCCGGY	1 cut(s)	2549
Bse1I	ACTGG	6 cut(s)	119, 1144, 1529, 1805, 1947, 2419
Bse21I	CCTNAGG	1 cut(s)	2646
Bse3DI	GCAATG	1 cut(s)	2445
Bse8I	GATNNNNATC	4 cut(s)	2631, 2868, 2874, 3147
BseBI	CCWGG	5 cut(s)	731, 2014, 2034, 3186, 3230
BseCI	ATCGAT	1 cut(s)	2091
BseDI	CCNNGG	4 cut(s)	730, 1176, 1652, 2013
BseGI	GGATG	9 cut(s)	1018, 1688, 1743, 1849, 2313, 2551, 2656, 2809, 3436
BseJI	GATNNNNATC	4 cut(s)	2631, 2868, 2874, 3147
BseMI	GCAATG	1 cut(s)	2445
BseNI	ACTGG	6 cut(s)	119, 1144, 1529, 1805, 1947, 2419
BseRI	GAGGAG	3 cut(s)	325, 1110, 2683
BseXI	GCAGC	5 cut(s)	113, 229, 1592, 2290, 2896
BseYI	CCCAGC	2 cut(s)	63, 2228
BsgI	GTGCAG	1 cut(s)	223
Bsh1236I	CGCG	2 cut(s)	495, 1504
BshFI	GGCC	2 cut(s)	1528, 2690
BshVI	ATCGAT	1 cut(s)	2091
BsiHKAI	GWGCWC	3 cut(s)	2388, 3180, 3221
BsiHKCI	CYCGRG	1 cut(s)	1573
BsiSI	CCGG	2 cut(s)	1911, 2550
BslFI	GGGAC	8 cut(s)	391, 1263, 1463, 1496, 1771, 2023, 2607, 3459
BsmAI	GTCTC	9 cut(s)	433, 445, 1036, 1342, 1426, 2459, 3064, 3277, 3327
BsmBI	CGTCTC	2 cut(s)	433, 3277
BsmFI	GGGAC	8 cut(s)	391, 1263, 1463, 1496, 1771, 2023, 2607, 3459
BsmI	GAATGC	1 cut(s)	722
BsnI	GGCC	2 cut(s)	1528, 2690
BsoBI	CYCGRG	1 cut(s)	1573
Bsp119I	TTCGAA	1 cut(s)	2405
Bsp1286I	GDGCHC	4 cut(s)	2388, 3120, 3180, 3221
Bsp19I	CCATGG	1 cut(s)	1176
BspACI	CCGC	2 cut(s)	622, 1504
BspANI	GGCC	2 cut(s)	1528, 2690
BspDI	ATCGAT	1 cut(s)	2091
BspFNI	CGCG	2 cut(s)	495, 1504
BspHI	TCATGA	7 cut(s)	580, 1620, 2176, 2530, 2629, 2872, 2899
BspMAI	CTGCAG	2 cut(s)	403, 1819
BspPI	GGATC	9 cut(s)	569, 582, 1236, 2139, 2219, 2232, 2511, 2535, 2636
BspQI	GCTCTTC	1 cut(s)	637
BspT104I	TTCGAA	1 cut(s)	2405
BsrDI	GCAATG	1 cut(s)	2445
BsrFI	RCCGGY	1 cut(s)	2549
BsrI	ACTGG	6 cut(s)	119, 1144, 1529, 1805, 1947, 2419
BssAI	RCCGGY	1 cut(s)	2549
BssECI	CCNNGG	4 cut(s)	730, 1176, 1652, 2013
BssT1I	CCWWGG	1 cut(s)	1176
Bst2UI	CCWGG	5 cut(s)	731, 2014, 2034, 3186, 3230
Bst4CI	ACNGT	8 cut(s)	610, 707, 1315, 1454, 1970, 2005, 2924, 2948
Bst6I	CTCTTC	3 cut(s)	637, 649, 917
BstBI	TTCGAA	1 cut(s)	2405
BstC8I	GCNNGC	6 cut(s)	497, 520, 1467, 1610, 2551, 2688
BstDSI	CCRYGG	1 cut(s)	1176
BstF5I	GGATG	9 cut(s)	1018, 1688, 1743, 1849, 2313, 2551, 2656, 2809, 3436
BstFNI	CGCG	2 cut(s)	495, 1504
BstHHI	GCGC	1 cut(s)	495
BstMAI	GTCTC	9 cut(s)	433, 445, 1036, 1342, 1426, 2459, 3064, 3277, 3327
BstMWI	GCNNNNNNNGC	7 cut(s)	1264, 1413, 2383, 2435, 3115, 3225, 3264
BstNI	CCWGG	5 cut(s)	731, 2014, 2034, 3186, 3230
BstNSI	RCATGY	6 cut(s)	531, 671, 2087, 2357, 2494, 2600
BstSCI	CCNGG	6 cut(s)	729, 1910, 2012, 2032, 3184, 3228
BstSFI	CTRYAG	3 cut(s)	399, 1815, 2601
BstUI	CGCG	2 cut(s)	495, 1504
BstV1I	GCAGC	5 cut(s)	113, 229, 1592, 2290, 2896
BstV2I	GAAGAC	6 cut(s)	102, 1722, 1794, 1881, 2082, 3274
BstX2I	RGATCY	3 cut(s)	574, 1862, 2224
BstXI	CCANNNNNNTGG	3 cut(s)	161, 2458, 3369
BstYI	RGATCY	3 cut(s)	574, 1862, 2224
Bsu15I	ATCGAT	1 cut(s)	2091
Bsu36I	CCTNAGG	1 cut(s)	2646
BsuI	GTATCC	2 cut(s)	202, 1828
BsuRI	GGCC	2 cut(s)	1528, 2690
BsuTUI	ATCGAT	1 cut(s)	2091
BtgI	CCRYGG	1 cut(s)	1176
BtsCI	GGATG	9 cut(s)	1018, 1688, 1743, 1849, 2313, 2551, 2656, 2809, 3436
BtsI	GCAGTG	2 cut(s)	850, 2629
BtsIMutI	CAGTG	6 cut(s)	206, 520, 850, 1320, 1459, 2629
Cac8I	GCNNGC	6 cut(s)	497, 520, 1467, 1610, 2551, 2688
CciI	TCATGA	7 cut(s)	580, 1620, 2176, 2530, 2629, 2872, 2899
CfoI	GCGC	1 cut(s)	495
Cfr10I	RCCGGY	1 cut(s)	2549
Cfr13I	GGNCC	4 cut(s)	378, 757, 2010, 2448
ClaI	ATCGAT	1 cut(s)	2091
CspCI	CAANNNNNGTGG	2 cut(s)	3169, 3204
DraI	TTTAAA	1 cut(s)	1435
Eam1104I	CTCTTC	3 cut(s)	637, 649, 917
EarI	CTCTTC	3 cut(s)	637, 649, 917
EciI	GGCGGA	1 cut(s)	611
Ecl136II	GAGCTC	1 cut(s)	3219
Eco130I	CCWWGG	1 cut(s)	1176
Eco24I	GRGCYC	2 cut(s)	3120, 3221
Eco32I	GATATC	2 cut(s)	244, 604
Eco47I	GGWCC	4 cut(s)	378, 757, 2010, 2448
Eco53kI	GAGCTC	1 cut(s)	3219
Eco57I	CTGAAG	3 cut(s)	1393, 1878, 3244
Eco81I	CCTNAGG	1 cut(s)	2646
Eco88I	CYCGRG	1 cut(s)	1573
EcoICRI	GAGCTC	1 cut(s)	3219
EcoO109I	RGGNCCY	1 cut(s)	378
EcoRII	CCWGG	5 cut(s)	729, 2012, 2032, 3184, 3228
EcoRV	GATATC	2 cut(s)	244, 604
EcoT14I	CCWWGG	1 cut(s)	1176
EcoT38I	GRGCYC	2 cut(s)	3120, 3221
ErhI	CCWWGG	1 cut(s)	1176
Esp3I	CGTCTC	2 cut(s)	433, 3277
FalI	AAGNNNNNCTT	6 cut(s)	1053, 1085, 1779, 1811, 2844, 2876
FaqI	GGGAC	8 cut(s)	391, 1263, 1463, 1496, 1771, 2023, 2607, 3459
FauNDI	CATATG	1 cut(s)	2484
FbaI	TGATCA	8 cut(s)	510, 2422, 2626, 2632, 2869, 2875, 2965, 3007
Fnu4HI	GCNGC	5 cut(s)	127, 218, 1606, 2279, 2910
FokI	GGATG	9 cut(s)	1025, 1695, 1750, 1836, 2320, 2558, 2663, 2816, 3423
FriOI	GRGCYC	2 cut(s)	3120, 3221
Fsp4HI	GCNGC	5 cut(s)	127, 218, 1606, 2279, 2910
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	5 cut(s)	127, 218, 1606, 2279, 2910
GsaI	CCCAGC	2 cut(s)	67, 2232
GsuI	CTGGAG	2 cut(s)	1514, 2558
HaeIII	GGCC	2 cut(s)	1528, 2690
HapII	CCGG	2 cut(s)	1911, 2550
HhaI	GCGC	1 cut(s)	495
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HincII	GTYRAC	1 cut(s)	2986
HindII	GTYRAC	1 cut(s)	2986
HindIII	AAGCTT	3 cut(s)	935, 2146, 2726
HpaII	CCGG	2 cut(s)	1911, 2550
HphI	GGTGA	2 cut(s)	2474, 3437
Hpy166II	GTNNAC	4 cut(s)	164, 2951, 2986, 3308
Hpy8I	GTNNAC	4 cut(s)	164, 2951, 2986, 3308
HpyCH4III	ACNGT	8 cut(s)	610, 707, 1315, 1454, 1970, 2005, 2924, 2948
HpyCH4IV	ACGT	1 cut(s)	1398
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1264, 1413, 2383, 2435, 3115, 3225, 3264
HpySE526I	ACGT	1 cut(s)	1398
HspAI	GCGC	1 cut(s)	493
KflI	GGGWCCC	1 cut(s)	378
KroI	GCCGGC	1 cut(s)	2549
KroNI	GCCGGC	1 cut(s)	2551
Ksp22I	TGATCA	8 cut(s)	510, 2422, 2626, 2632, 2869, 2875, 2965, 3007
LguI	GCTCTTC	1 cut(s)	637
LmnI	GCTCC	8 cut(s)	338, 778, 1097, 1264, 2383, 2539, 3022, 3115
Lsp1109I	GCAGC	5 cut(s)	113, 229, 1592, 2290, 2896
MaeII	ACGT	1 cut(s)	1398
MflI	RGATCY	3 cut(s)	574, 1862, 2224
MhlI	GDGCHC	4 cut(s)	2388, 3120, 3180, 3221
MlyI	GAGTC	8 cut(s)	272, 647, 1217, 1478, 2167, 2561, 2980, 3329
MmeI	TCCRAC	5 cut(s)	419, 1759, 2142, 2760, 2962
MroNI	GCCGGC	1 cut(s)	2549
MroXI	GAANNNNTTC	4 cut(s)	232, 2886, 3152, 3167
MslI	CAYNNNNRTG	4 cut(s)	2456, 2898, 2904, 3367
MspA1I	CMGCKG	1 cut(s)	1605
MspI	CCGG	2 cut(s)	1911, 2550
MspR9I	CCNGG	6 cut(s)	731, 1912, 2014, 2034, 3186, 3230
Mva1269I	GAATGC	1 cut(s)	722
MvaI	CCWGG	5 cut(s)	731, 2014, 2034, 3186, 3230
MvnI	CGCG	2 cut(s)	495, 1504
MwoI	GCNNNNNNNGC	7 cut(s)	1264, 1413, 2383, 2435, 3115, 3225, 3264
NaeI	GCCGGC	1 cut(s)	2551
NciI	CCSGG	1 cut(s)	1912
NcoI	CCATGG	1 cut(s)	1176
NdeI	CATATG	1 cut(s)	2484
NgoMIV	GCCGGC	1 cut(s)	2549
NmuCI	GTSAC	7 cut(s)	670, 845, 1196, 1220, 1309, 1384, 2288
NspI	RCATGY	6 cut(s)	531, 671, 2087, 2357, 2494, 2600
NspV	TTCGAA	1 cut(s)	2405
PaeR7I	CTCGAG	1 cut(s)	1573
PagI	TCATGA	7 cut(s)	580, 1620, 2176, 2530, 2629, 2872, 2899
PciI	ACATGT	2 cut(s)	527, 667
PciSI	GCTCTTC	1 cut(s)	637
PctI	GAATGC	1 cut(s)	722
PdiI	GCCGGC	1 cut(s)	2551
PdmI	GAANNNNTTC	4 cut(s)	232, 2886, 3152, 3167
PfoI	TCCNGGA	1 cut(s)	1910
PkrI	GCNGC	5 cut(s)	128, 219, 1607, 2280, 2911
PleI	GAGTC	8 cut(s)	272, 646, 1217, 1478, 2167, 2561, 2979, 3329
PpsI	GAGTC	8 cut(s)	272, 646, 1217, 1478, 2167, 2561, 2979, 3329
PpuMI	RGGWCCY	1 cut(s)	378
PscI	ACATGT	2 cut(s)	527, 667
PshBI	ATTAAT	1 cut(s)	410
PsiI	TTATAA	2 cut(s)	870, 2579
Psp124BI	GAGCTC	1 cut(s)	3221
Psp1406I	AACGTT	1 cut(s)	1398
Psp5II	RGGWCCY	1 cut(s)	378
Psp6I	CCWGG	5 cut(s)	729, 2012, 2032, 3184, 3228
PspFI	CCCAGC	2 cut(s)	63, 2228
PspGI	CCWGG	5 cut(s)	729, 2012, 2032, 3184, 3228
PspPI	GGNCC	4 cut(s)	378, 757, 2010, 2448
PspPPI	RGGWCCY	1 cut(s)	378
PstI	CTGCAG	2 cut(s)	403, 1819
PsuI	RGATCY	3 cut(s)	574, 1862, 2224
PvuII	CAGCTG	1 cut(s)	1605
RseI	CAYNNNNRTG	4 cut(s)	2456, 2898, 2904, 3367
SacI	GAGCTC	1 cut(s)	3221
SapI	GCTCTTC	1 cut(s)	637
SatI	GCNGC	5 cut(s)	127, 218, 1606, 2279, 2910
Sau96I	GGNCC	4 cut(s)	378, 757, 2010, 2448
ScaI	AGTACT	5 cut(s)	709, 749, 1987, 2070, 2202
SchI	GAGTC	8 cut(s)	272, 647, 1217, 1478, 2167, 2561, 2980, 3329
ScrFI	CCNGG	6 cut(s)	731, 1912, 2014, 2034, 3186, 3230
SduI	GDGCHC	4 cut(s)	2388, 3120, 3180, 3221
SfcI	CTRYAG	3 cut(s)	399, 1815, 2601
Sfr274I	CTCGAG	1 cut(s)	1573
SfuI	TTCGAA	1 cut(s)	2405
SinI	GGWCC	4 cut(s)	378, 757, 2010, 2448
SlaI	CTCGAG	1 cut(s)	1573
SmiMI	CAYNNNNRTG	4 cut(s)	2456, 2898, 2904, 3367
SmlI	CTYRAG	4 cut(s)	223, 1007, 1573, 1770
SmoI	CTYRAG	4 cut(s)	223, 1007, 1573, 1770
SpeI	ACTAGT	3 cut(s)	674, 710, 3310
SsiI	CCGC	2 cut(s)	622, 1504
SspI	AATATT	2 cut(s)	2575, 2770
SstI	GAGCTC	1 cut(s)	3221
StyD4I	CCNGG	6 cut(s)	729, 1910, 2012, 2032, 3184, 3228
StyI	CCWWGG	1 cut(s)	1176
TaaI	ACNGT	8 cut(s)	610, 707, 1315, 1454, 1970, 2005, 2924, 2948
TaiI	ACGT	1 cut(s)	1401
TaqI	TCGA	8 cut(s)	616, 809, 1001, 1514, 1574, 1982, 2091, 2405
TatI	WGTACW	8 cut(s)	533, 547, 707, 747, 1558, 1985, 2068, 2200
TscAI	CASTG	6 cut(s)	206, 520, 850, 1320, 1459, 2629
TseFI	GTSAC	7 cut(s)	670, 845, 1196, 1220, 1309, 1384, 2288
TseI	GCWGC	5 cut(s)	126, 217, 1605, 2278, 2909
Tsp45I	GTSAC	7 cut(s)	670, 845, 1196, 1220, 1309, 1384, 2288
TspGWI	ACGGA	2 cut(s)	2447, 2691
TspRI	CASTG	6 cut(s)	206, 520, 850, 1320, 1459, 2629
VpaK11BI	GGWCC	4 cut(s)	378, 757, 2010, 2448
VspI	ATTAAT	1 cut(s)	410
XapI	RAATTY	2 cut(s)	589, 1170
XceI	RCATGY	6 cut(s)	531, 671, 2087, 2357, 2494, 2600
XhoI	CTCGAG	1 cut(s)	1573
XmnI	GAANNNNTTC	4 cut(s)	232, 2886, 3152, 3167
ZrmI	AGTACT	5 cut(s)	709, 749, 1987, 2070, 2202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.