Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001641

Physical Location & Seq

Genomic Coordinates Reverse (-)

47433556 .. 47434697

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG345500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTCACCAGCAAGGAACTCCTTAGCTCCGACCACACCGTCGTCCGGTCAATTTCTCCGACTCATCCGGTTACAAAGCTTCCAAACAGAGGTCTCCGAGGACCAGCATGTCATTGATTTCATCACAGCACAATGCAACATTTGGTGCGAGCAAGACACCCTGATCAGTGCAAGCAACACATGTAGTACAAACACCCCTGTATTTTCCCCATCAATGGCATCATTGGATCCTCATGATGCGAATTTGCCATACGATATCACAGTAGGTCGAATCCGCCTATGCTCTTCTGAGTCCTCTTCTCCATTGAACTTCCTACAACATGTCAGTAGTTACAACTCTGAGAATAGAATGAAGAATAGTACTGGTGCATGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

125

Amino Acids

13.71

Weight (kDa)

5.12

Isoelectric Point (pI)

67.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16910
fragaria_vesca	FvH4_2g15460 FvH4_2g15460 FvH4_2g15470
malus_domestica	MD05G1122900.v1.1 MD05G1123000.v1.1 MD10G1125700.v1.1
prunus_persica	Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166900_v2.0.a1
pyrus_communis	pycom05g11720 pycom05g11750 pycom10g10820
rosa_chinensis	RchiOBHm_Chr6g0278441 RchiOBHm_Chr6g0278471
rosa_laevigata	RLG00000013226 RLG00000013228 RLG00000013381
rosa_multiflora	Rmu_sc0000258.1_g000003 Rmu_sc0000258.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229220 Rroxscaffold_7G00189870 Rroxscaffold_7G00189880 Rroxscaffold_7G00190350
rosa_rugosa	Rorug06G0006400 Rorug06G0117000 Rorug06G0117100.1
rosa_samantha	Rh1DG021000 Rh2DG345500 Rh2DG346800 Rh3AG263900 Rh3CG365900 Rh3DG372000 Rh5CG269300 Rh6AG226300 Rh6BG230500 Rh6CG233600 Rh6DG224900 Rh7AG412300 Rh7CG321300 Rh7DG336100
rosa_wichuraiana	Rw0G018390 Rw3G029150 Rw5G034840 Rw6G019740 Rw6G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	37, 107
AciI	CCGC	1 cut(s)	274
AclWI	GGATC	2 cut(s)	221, 234
AcsI	RAATTY	1 cut(s)	241
AfaI	GTAC	2 cut(s)	187, 361
AfiI	CCNNNNNNNGG	3 cut(s)	44, 88, 214
AflIII	ACRYGT	2 cut(s)	179, 319
AgsI	TTSAA	1 cut(s)	307
AluBI	AGCT	2 cut(s)	26, 78
AluI	AGCT	2 cut(s)	26, 78
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	2 cut(s)	221, 234
ApoI	RAATTY	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	100
BamHI	GGATCC	1 cut(s)	226
BccI	CCATC	1 cut(s)	217
BclI	TGATCA	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	97
BmcAI	AGTACT	1 cut(s)	361
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	228
BmsI	GCATC	2 cut(s)	226, 227
Bpu10I	CCTNAGC	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	96
BsaWI	WCCGGW	2 cut(s)	44, 66
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 88, 214
Bse1I	ACTGG	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	3 cut(s)	44, 88, 214
BseMII	CTCAG	2 cut(s)	279, 330
BseNI	ACTGG	1 cut(s)	367
BsiSI	CCGG	2 cut(s)	45, 67
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	3 cut(s)	44, 88, 214
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	357
Bso31I	GGTCTC	1 cut(s)	97
Bsp143I	GATC	2 cut(s)	162, 226
BspACI	CCGC	1 cut(s)	274
BspCNI	CTCAG	2 cut(s)	280, 331
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	2 cut(s)	221, 234
BspQI	GCTCTTC	1 cut(s)	289
BspTNI	GGTCTC	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	162, 226
Bst4CI	ACNGT	2 cut(s)	39, 262
Bst6I	CTCTTC	2 cut(s)	289, 301
BstC8I	GCNNGC	2 cut(s)	149, 172
BstDEI	CTNAG	3 cut(s)	22, 288, 339
BstF5I	GGATG	1 cut(s)	63
BstKTI	GATC	2 cut(s)	165, 229
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	2 cut(s)	162, 226
BstNSI	RCATGY	4 cut(s)	110, 183, 323, 372
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	2 cut(s)	149, 172
CciI	TCATGA	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	186, 360
CviAII	CATG	5 cut(s)	107, 180, 233, 320, 369
CviJI	RGCY	2 cut(s)	26, 78
CviKI_1	RGCY	2 cut(s)	26, 78
CviQI	GTAC	2 cut(s)	186, 360
DdeI	CTNAG	3 cut(s)	22, 288, 339
DpnI	GATC	2 cut(s)	164, 228
DpnII	GATC	2 cut(s)	162, 226
DrdI	GACNNNNNNGTC	2 cut(s)	37, 107
DseDI	GACNNNNNNGTC	2 cut(s)	37, 107
Eam1104I	CTCTTC	2 cut(s)	289, 301
EarI	CTCTTC	2 cut(s)	289, 301
EciI	GGCGGA	1 cut(s)	263
Eco31I	GGTCTC	1 cut(s)	97
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	100
EcoRV	GATATC	1 cut(s)	256
FaeI	CATG	5 cut(s)	110, 183, 236, 323, 372
FaiI	YATR	7 cut(s)	108, 181, 234, 250, 280, 321, 370
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	5 cut(s)	106, 179, 232, 319, 368
FbaI	TGATCA	1 cut(s)	162
FokI	GGATG	1 cut(s)	50
HapII	CCGG	2 cut(s)	45, 67
Hin1II	CATG	5 cut(s)	110, 183, 236, 323, 372
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	3 cut(s)	60, 270, 290
HpaII	CCGG	2 cut(s)	45, 67
Hpy188I	TCNGA	5 cut(s)	30, 59, 97, 289, 340
Hpy188III	TCNNGA	1 cut(s)	233
Hpy99I	CGWCG	1 cut(s)	43
HpyCH4III	ACNGT	2 cut(s)	39, 262
HpyCH4V	TGCA	3 cut(s)	135, 170, 368
HpyF3I	CTNAG	3 cut(s)	22, 288, 339
Hsp92II	CATG	5 cut(s)	110, 183, 236, 323, 372
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	162, 226
LguI	GCTCTTC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	7 cut(s)	21, 58, 80, 116, 173, 210, 348
LweI	GCATC	2 cut(s)	226, 227
MaeIII	GTNAC	3 cut(s)	3, 69, 329
MalI	GATC	2 cut(s)	164, 228
MboI	GATC	2 cut(s)	162, 226
MboII	GAAGA	3 cut(s)	276, 288, 364
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	2 cut(s)	50, 241
MlyI	GAGTC	2 cut(s)	54, 299
MmeI	TCCRAC	2 cut(s)	53, 82
MnlI	CCTC	4 cut(s)	82, 91, 240, 304
MspI	CCGG	2 cut(s)	45, 67
NdeII	GATC	2 cut(s)	162, 226
NlaIII	CATG	5 cut(s)	110, 183, 236, 323, 372
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	4 cut(s)	110, 183, 323, 372
PagI	TCATGA	1 cut(s)	232
PciI	ACATGT	2 cut(s)	179, 319
PciSI	GCTCTTC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	270
PleI	GAGTC	2 cut(s)	54, 298
PpsI	GAGTC	2 cut(s)	54, 298
PscI	ACATGT	2 cut(s)	179, 319
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	2 cut(s)	187, 361
RsaNI	GTAC	2 cut(s)	186, 360
SapI	GCTCTTC	1 cut(s)	289
Sau3AI	GATC	2 cut(s)	162, 226
Sau96I	GGNCC	1 cut(s)	100
ScaI	AGTACT	1 cut(s)	361
SchI	GAGTC	2 cut(s)	54, 299
SetI	ASST	4 cut(s)	28, 80, 93, 268
SfaNI	GCATC	2 cut(s)	226, 227
SinI	GGWCC	1 cut(s)	100
Sse9I	AATT	2 cut(s)	50, 241
SsiI	CCGC	1 cut(s)	274
TaaI	ACNGT	2 cut(s)	39, 262
TaqI	TCGA	1 cut(s)	268
TasI	AATT	2 cut(s)	50, 241
TatI	WGTACW	2 cut(s)	185, 359
TfiI	GAWTC	1 cut(s)	270
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	3
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	109, 365
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	1 cut(s)	241
XceI	RCATGY	4 cut(s)	110, 183, 323, 372
ZrmI	AGTACT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.