Prupe.8G166800_v2.0.a1
BHLH Family

Transcription factor ABORTED

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
17274260 .. 17277900
3641 bp
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UTR
Exon/CDS
Intron
Prupe.8G166800.3

Sequence Viewer

Length: 1863 bp
ATGATCATCATTATGCAAAATTTGACTGAGAGGCTTAGACCCCTTGTGGGTTTGAAGGGCTGGGATTATTGTGTTATTTGGAAATTGAGTGAAAACCAAAGGTTTATTGAGTTGATGGATTGTTGTTGTTCTGGGGCTGATGAGAACACTCAGACTAATGGAGGACAAGAACTTCTTTTTCCAGTTTATCCAGTCCTTCCATGCAGAGATACAATGCAGCACTCAAGAACCAATTCCTGTGATGTTCTTGCCCAGCTTCCTTCTTCTCTGTCCTTAGACTCTGGGATTTATGCACATCCCTTAATATCAAACCAGCCCATTTGGTTGAACTCATCTTCTAACAGAGATTCAAGTGCCATGGCAGAAAGAGATGGGACCAGAGTTTTGGTTCCAAGTGCAGGAGGGTTGATTGAGCTATTTGTCTCCAAAGATGTCTCTGAAGACCAACAAGTGATTGATTATATCACAGCCCAATGCAACATTTCAAAGGAGCAAGACACCCTGCTTGGTGCTGGCTGCAATACAAGCTTCCCTGTCAATATACAGGACATGAGCACTGAAATACAACCACATGCATTTCCAGGCAATGAGAATGAAGGAAATGATAATCTAAACAGTAATCATTTCCAGCAGCCACCTGTTGTTTCCCCTTCAGTGGATCATGATTCAAATGTGCCATACGACATATCAGTTGATCGAATCCGCCTCTGCAGCGCTTCTCCAATGAATTTCCTACAACATGTCACTTACAACTCAGAGAACAGCATGAAGAATTGTAATAGTAATGTGTACTATGAGCAGCGTTCACATGAGTCCTTGGGAGAGATGGGGCTTCAAGCTGACGCTGATGCACCAAACATGCACAATAGTATGCATGTTATGGAGGCATTGGAAAATATGGAGCAGCAGGGTGTTGAGGATCAAGATTCAGTTCAACATGAGGCCCAGGGTGGAAGAACTGCAGATAATTCAGGCTCAGATTGCAGTGATCAAATTGATGATGAAGATGACACAAAATATAGGCGGAGAACAGGGAAAGGGCCTCAATCCAAAAACCTTTTTGCAGAGAGGAAGAGAAGGAAGAAGCTCAACGATAGACTGTATTGCCTTCGGTCTTTGGTTCCCAACATTTCTAAGATGGACAAGGCTGCCATCCTCGGGGATGCGATTGATTTCGTGAAGGACTTGCTGAGGCAAGTAAAGGAACTCCAAGATGAGCTTGAACAGCATTCAAATGATGAAGGACCTAATAAGAAAACTAGTGCCAATATCTGTGGAAACCACAACAATTTCCAACCAGAGATTCTAAATCAAAATGGAACAAGCATTACAAACAAGCCAGAAAATGGTGATAAGCCTCCAAATGGATTTCATGTGGGCACAGCAGGTGATATTGGCAACATCTCAAAACAGAAACAGGACTCGGATAGTACAAATGACAGAGGACAACAGATGGAGCCACAAGTGGGAGTCACTCAGTTAGATGGCAATGAATTCTTTGTGACTGTGTTCTGTGAGCACAAGCCTGGAGGGTTTGTGAGATTGATGGAGGCATTGGATACTTTAGGCTTGGAAGTAACCAATGCAAATGTGACCAGCTTCAGAAGCCTTGTCTCCAATGTCTTTAAAGTTGAGAAGAAAGACAGTGAAGTAGTTCAAGCTGATGATGTAAGGGACTCTTTGCTGGAGATAACAAGGAACCCATCATCAAAAGTGTGGCCTGAGATGGCCAAAGCAAAAGCATCAGAAAATGGGAGTGGATTGGATCACTTTCATCATGATGATCATAATCATTACCAGCAACACCATCTCCATAATTACCATGCTTCTTCATACAACCTCCAACATCTTTATAATTATTAA

Protein Analysis

621

Amino Acids

69.34

Weight (kDa)

5.01

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1854
AarI CACCTGC 1 cut(s) 1376
Acc36I ACCTGC 1 cut(s) 1376
AccB7I CCANNNNNTGG 1 cut(s) 1346
AciI CCGC 2 cut(s) 703, 1024
AclWI GGATC 3 cut(s) 666, 927, 1773
AcoI YGGCCR 1 cut(s) 1728
AcsI RAATTY 3 cut(s) 19, 727, 1493
AcuI CTGAAG 3 cut(s) 459, 636, 1585
AfaI GTAC 2 cut(s) 791, 1432
AfeI AGCGCT 1 cut(s) 715
AfiI CCNNNNNNNGG 7 cut(s) 47, 398, 655, 1158, 1346, 1364, 1466
AflIII ACRYGT 1 cut(s) 739
AhlI ACTAGT 1 cut(s) 1259
AjnI CCWGG 3 cut(s) 580, 945, 1525
AjuI GAANNNNNNNTTGG 2 cut(s) 1287, 1319
AluBI AGCT 8 cut(s) 256, 415, 528, 839, 1087, 1219, 1599, 1661
AluI AGCT 8 cut(s) 256, 415, 528, 839, 1087, 1219, 1599, 1661
Alw21I GWGCWC 2 cut(s) 557, 1521
Alw26I GTCTC 3 cut(s) 427, 439, 1618
AlwI GGATC 3 cut(s) 666, 927, 1773
Ama87I CYCGRG 1 cut(s) 1157
Aor51HI AGCGCT 1 cut(s) 715
AoxI GGCC 4 cut(s) 942, 1040, 1718, 1728
ApeKI GCWGC 7 cut(s) 217, 516, 631, 711, 799, 904, 1148
ApoI RAATTY 3 cut(s) 19, 727, 1493
ArsI GACNNNNNNTTYG 2 cut(s) 367, 399
Asp700I GAANNNNTTC 2 cut(s) 232, 1653
AspLEI GCGC 1 cut(s) 716
AspS9I GGNCC 4 cut(s) 375, 943, 1040, 1244
AsuHPI GGTGA 2 cut(s) 1361, 1400
AvaI CYCGRG 1 cut(s) 1157
AvaII GGWCC 2 cut(s) 375, 1244
BaeGI GKGCMC 1 cut(s) 1382
BalI TGGCCA 1 cut(s) 1730
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 2 cut(s) 557, 1521
BbvCI CCTCAGC 1 cut(s) 1190
BbvI GCAGC 7 cut(s) 229, 503, 643, 723, 811, 916, 1135
BciT130I CCWGG 3 cut(s) 582, 947, 1527
BciVI GTATCC 1 cut(s) 1552
BclI TGATCA 3 cut(s) 3, 988, 1783
BcoDI GTCTC 3 cut(s) 427, 439, 1618
BcuI ACTAGT 1 cut(s) 1259
BfaI CTAG 1 cut(s) 1260
BfmI CTRYAG 2 cut(s) 709, 960
BfoI RGCGCY 1 cut(s) 717
BfuAI ACCTGC 1 cut(s) 1376
BfuI GTATCC 1 cut(s) 1552
BisI GCNGC 7 cut(s) 218, 517, 632, 712, 800, 905, 1149
BlsI GCNGC 7 cut(s) 219, 518, 633, 713, 801, 906, 1150
Bme1390I CCNGG 3 cut(s) 582, 947, 1527
Bme18I GGWCC 2 cut(s) 375, 1244
BmeT110I CYCGRG 1 cut(s) 1157
BmgT120I GGNCC 4 cut(s) 375, 943, 1040, 1244
BmiI GGNNCC 5 cut(s) 376, 390, 1122, 1458, 1700
BmrFI CCNGG 3 cut(s) 582, 947, 1527
BmsI GCATC 3 cut(s) 838, 1153, 1751
BpiI GAAGAC 1 cut(s) 447
BpmI CTGGAG 2 cut(s) 1548, 1706
Bpu10I CCTNAGC 1 cut(s) 1190
BpuEI CTTGAG 1 cut(s) 208
BsaBI GATNNNNATC 1 cut(s) 1788
BsaJI CCNNGG 5 cut(s) 357, 816, 945, 946, 1156
BsaXI ACNNNNNCTCC 4 cut(s) 1521, 1551, 1794, 1824
Bsc4I CCNNNNNNNGG 7 cut(s) 47, 398, 655, 1158, 1346, 1364, 1466
Bse1I ACTGG 2 cut(s) 182, 191
Bse3DI GCAATG 2 cut(s) 592, 1495
Bse8I GATNNNNATC 1 cut(s) 1788
BseBI CCWGG 3 cut(s) 582, 947, 1527
BseDI CCNNGG 5 cut(s) 357, 816, 945, 946, 1156
BseGI GGATG 3 cut(s) 295, 1152, 1168
BseJI GATNNNNATC 1 cut(s) 1788
BseLI CCNNNNNNNGG 7 cut(s) 47, 398, 655, 1158, 1346, 1364, 1466
BseMI GCAATG 2 cut(s) 592, 1495
BseMII CTCAG 7 cut(s) 18, 164, 768, 990, 1181, 1490, 1713
BseNI ACTGG 2 cut(s) 182, 191
BseSI GKGCMC 1 cut(s) 1382
BseXI GCAGC 7 cut(s) 229, 503, 643, 723, 811, 916, 1135
BseYI CCCAGC 2 cut(s) 60, 252
BsgI GTGCAG 1 cut(s) 417
BshFI GGCC 4 cut(s) 944, 1042, 1720, 1730
BsiHKAI GWGCWC 2 cut(s) 557, 1521
BsiHKCI CYCGRG 1 cut(s) 1157
BslFI GGGAC 2 cut(s) 388, 1688
BslI CCNNNNNNNGG 7 cut(s) 47, 398, 655, 1158, 1346, 1364, 1466
BsmAI GTCTC 3 cut(s) 427, 439, 1618
BsmFI GGGAC 2 cut(s) 388, 1688
BsmI GAATGC 1 cut(s) 1228
BsnI GGCC 4 cut(s) 944, 1042, 1720, 1730
BsoBI CYCGRG 1 cut(s) 1157
Bsp1286I GDGCHC 3 cut(s) 557, 1382, 1521
Bsp143I GATC 7 cut(s) 3, 658, 694, 919, 988, 1765, 1783
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 2 cut(s) 703, 1024
BspANI GGCC 4 cut(s) 944, 1042, 1720, 1730
BspCNI CTCAG 7 cut(s) 19, 163, 767, 989, 1182, 1489, 1714
BspHI TCATGA 2 cut(s) 661, 1777
BspLI GGNNCC 5 cut(s) 376, 390, 1122, 1458, 1700
BspMAI CTGCAG 2 cut(s) 713, 964
BspMI ACCTGC 1 cut(s) 1376
BspPI GGATC 3 cut(s) 666, 927, 1773
BsrDI GCAATG 2 cut(s) 592, 1495
BsrI ACTGG 2 cut(s) 182, 191
BssECI CCNNGG 5 cut(s) 357, 816, 945, 946, 1156
BssMI GATC 7 cut(s) 3, 658, 694, 919, 988, 1765, 1783
BssT1I CCWWGG 2 cut(s) 357, 816
Bst2UI CCWGG 3 cut(s) 582, 947, 1527
Bst4CI ACNGT 4 cut(s) 617, 1101, 1507, 1646
Bst6I CTCTTC 1 cut(s) 1067
BstC8I GCNNGC 1 cut(s) 514
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 3 cut(s) 295, 1152, 1168
BstH2I RGCGCY 1 cut(s) 717
BstHHI GCGC 1 cut(s) 716
BstKTI GATC 7 cut(s) 6, 661, 697, 922, 991, 1768, 1786
BstMAI GTCTC 3 cut(s) 427, 439, 1618
BstMBI GATC 7 cut(s) 3, 658, 694, 919, 988, 1765, 1783
BstMWI GCNNNNNNNGC 5 cut(s) 525, 711, 981, 1225, 1605
BstNI CCWGG 3 cut(s) 582, 947, 1527
BstNSI RCATGY 4 cut(s) 575, 743, 862, 878
BstSCI CCNGG 3 cut(s) 580, 945, 1525
BstSFI CTRYAG 2 cut(s) 709, 960
BstSLI GKGCMC 1 cut(s) 1382
BstV1I GCAGC 7 cut(s) 229, 503, 643, 723, 811, 916, 1135
BstV2I GAAGAC 1 cut(s) 447
BstXI CCANNNNNNTGG 1 cut(s) 385
BsuI GTATCC 1 cut(s) 1552
BsuRI GGCC 4 cut(s) 944, 1042, 1720, 1730
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 3 cut(s) 295, 1152, 1168
BtsI GCAGTG 1 cut(s) 991
BtsIMutI CAGTG 4 cut(s) 555, 660, 991, 1651
BveI ACCTGC 1 cut(s) 1376
Cac8I GCNNGC 1 cut(s) 514
CciI TCATGA 2 cut(s) 661, 1777
CfoI GCGC 1 cut(s) 716
Cfr13I GGNCC 4 cut(s) 375, 943, 1040, 1244
CseI GACGC 1 cut(s) 851
Csp6I GTAC 2 cut(s) 790, 1431
CspCI CAANNNNNGTGG 2 cut(s) 1255, 1290
CviQI GTAC 2 cut(s) 790, 1431
DpnI GATC 7 cut(s) 5, 660, 696, 921, 990, 1767, 1785
DpnII GATC 7 cut(s) 3, 658, 694, 919, 988, 1765, 1783
DraI TTTAAA 1 cut(s) 1627
EaeI YGGCCR 1 cut(s) 1728
Eam1104I CTCTTC 1 cut(s) 1067
EarI CTCTTC 1 cut(s) 1067
EciI GGCGGA 2 cut(s) 692, 1039
Eco130I CCWWGG 2 cut(s) 357, 816
Eco47I GGWCC 2 cut(s) 375, 1244
Eco47III AGCGCT 1 cut(s) 715
Eco57I CTGAAG 3 cut(s) 459, 636, 1585
Eco88I CYCGRG 1 cut(s) 1157
EcoO109I RGGNCCY 2 cut(s) 1040, 1244
EcoRI GAATTC 1 cut(s) 1493
EcoRII CCWGG 3 cut(s) 580, 945, 1525
EcoT14I CCWWGG 2 cut(s) 357, 816
EcoT22I ATGCAT 2 cut(s) 577, 876
ErhI CCWWGG 2 cut(s) 357, 816
FalI AAGNNNNNCTT 6 cut(s) 159, 191, 1203, 1235, 1663, 1695
FaqI GGGAC 2 cut(s) 388, 1688
FbaI TGATCA 3 cut(s) 3, 988, 1783
Fnu4HI GCNGC 7 cut(s) 218, 517, 632, 712, 800, 905, 1149
FokI GGATG 3 cut(s) 282, 1139, 1175
Fsp4HI GCNGC 7 cut(s) 218, 517, 632, 712, 800, 905, 1149
FspBI CTAG 1 cut(s) 1260
GlaI GCGC 1 cut(s) 715
GluI GCNGC 7 cut(s) 218, 517, 632, 712, 800, 905, 1149
GsaI CCCAGC 2 cut(s) 64, 256
GsuI CTGGAG 2 cut(s) 1548, 1706
HaeII RGCGCY 1 cut(s) 717
HaeIII GGCC 4 cut(s) 944, 1042, 1720, 1730
HgaI GACGC 1 cut(s) 851
HhaI GCGC 1 cut(s) 716
Hin6I GCGC 1 cut(s) 714
HinP1I GCGC 1 cut(s) 714
HindIII AAGCTT 1 cut(s) 526
HphI GGTGA 2 cut(s) 1361, 1400
Hpy166II GTNNAC 2 cut(s) 790, 806
Hpy188I TCNGA 7 cut(s) 153, 439, 757, 979, 1426, 1604, 1747
Hpy188III TCNNGA 5 cut(s) 225, 662, 923, 1177, 1778
Hpy8I GTNNAC 2 cut(s) 790, 806
HpyAV CCTTC 9 cut(s) 49, 206, 270, 590, 660, 1071, 1118, 1174, 1235
HpyCH4III ACNGT 4 cut(s) 617, 1101, 1507, 1646
HpyF10VI GCNNNNNNNGC 5 cut(s) 525, 711, 981, 1225, 1605
HspAI GCGC 1 cut(s) 714
Ksp22I TGATCA 3 cut(s) 3, 988, 1783
Kzo9I GATC 7 cut(s) 3, 658, 694, 919, 988, 1765, 1783
LmnI GCTCC 3 cut(s) 490, 901, 1456
Lsp1109I GCAGC 7 cut(s) 229, 503, 643, 723, 811, 916, 1135
LweI GCATC 3 cut(s) 838, 1153, 1751
MaeI CTAG 1 cut(s) 1260
MaeIII GTNAC 5 cut(s) 742, 1471, 1501, 1576, 1591
MalI GATC 7 cut(s) 5, 660, 696, 921, 990, 1767, 1785
MboI GATC 7 cut(s) 3, 658, 694, 919, 988, 1765, 1783
MhlI GDGCHC 3 cut(s) 557, 1382, 1521
MlsI TGGCCA 1 cut(s) 1730
MluNI TGGCCA 1 cut(s) 1730
MlyI GAGTC 5 cut(s) 272, 821, 1415, 1479, 1670
MmeI TCCRAC 1 cut(s) 1318
Mox20I TGGCCA 1 cut(s) 1730
Mph1103I ATGCAT 2 cut(s) 577, 876
MroXI GAANNNNTTC 2 cut(s) 232, 1653
MscI TGGCCA 1 cut(s) 1730
MseI TTAA 3 cut(s) 302, 1626, 1861
MslI CAYNNNNRTG 3 cut(s) 11, 1233, 1779
Msp20I TGGCCA 1 cut(s) 1730
MspR9I CCNGG 3 cut(s) 582, 947, 1527
Mva1269I GAATGC 1 cut(s) 1228
MvaI CCWGG 3 cut(s) 582, 947, 1527
MwoI GCNNNNNNNGC 5 cut(s) 525, 711, 981, 1225, 1605
NcoI CCATGG 1 cut(s) 357
NdeII GATC 7 cut(s) 3, 658, 694, 919, 988, 1765, 1783
NlaIV GGNNCC 5 cut(s) 376, 390, 1122, 1458, 1700
NmuCI GTSAC 4 cut(s) 742, 1471, 1501, 1591
NsiI ATGCAT 2 cut(s) 577, 876
NspI RCATGY 4 cut(s) 575, 743, 862, 878
PagI TCATGA 2 cut(s) 661, 1777
PaqCI CACCTGC 1 cut(s) 1376
PasI CCCWGGG 1 cut(s) 946
PciI ACATGT 1 cut(s) 739
PctI GAATGC 1 cut(s) 1228
PdmI GAANNNNTTC 2 cut(s) 232, 1653
PfeI GAWTC 5 cut(s) 347, 665, 699, 926, 1303
PflMI CCANNNNNTGG 1 cut(s) 1346
PkrI GCNGC 7 cut(s) 219, 518, 633, 713, 801, 906, 1150
PleI GAGTC 5 cut(s) 272, 820, 1415, 1478, 1670
PpsI GAGTC 5 cut(s) 272, 820, 1415, 1478, 1670
PpuMI RGGWCCY 1 cut(s) 1244
PscI ACATGT 1 cut(s) 739
PsiI TTATAA 1 cut(s) 1854
Psp5II RGGWCCY 1 cut(s) 1244
Psp6I CCWGG 3 cut(s) 580, 945, 1525
PspFI CCCAGC 2 cut(s) 60, 252
PspGI CCWGG 3 cut(s) 580, 945, 1525
PspN4I GGNNCC 5 cut(s) 376, 390, 1122, 1458, 1700
PspPI GGNCC 4 cut(s) 375, 943, 1040, 1244
PspPPI RGGWCCY 1 cut(s) 1244
PsrI GAACNNNNNNTAC 2 cut(s) 1312, 1344
PstI CTGCAG 2 cut(s) 713, 964
RsaI GTAC 2 cut(s) 791, 1432
RsaNI GTAC 2 cut(s) 790, 1431
RseI CAYNNNNRTG 3 cut(s) 11, 1233, 1779
SaqAI TTAA 3 cut(s) 302, 1626, 1861
SatI GCNGC 7 cut(s) 218, 517, 632, 712, 800, 905, 1149
Sau3AI GATC 7 cut(s) 3, 658, 694, 919, 988, 1765, 1783
Sau96I GGNCC 4 cut(s) 375, 943, 1040, 1244
SchI GAGTC 5 cut(s) 272, 821, 1415, 1479, 1670
ScrFI CCNGG 3 cut(s) 582, 947, 1527
SduI GDGCHC 3 cut(s) 557, 1382, 1521
SfaNI GCATC 3 cut(s) 838, 1153, 1751
SfcI CTRYAG 2 cut(s) 709, 960
SinI GGWCC 2 cut(s) 375, 1244
SmiMI CAYNNNNRTG 3 cut(s) 11, 1233, 1779
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
SpeI ACTAGT 1 cut(s) 1259
SsiI CCGC 2 cut(s) 703, 1024
SspMI CTAG 1 cut(s) 1260
StyD4I CCNGG 3 cut(s) 580, 945, 1525
StyI CCWWGG 2 cut(s) 357, 816
TaaI ACNGT 4 cut(s) 617, 1101, 1507, 1646
TaqI TCGA 1 cut(s) 697
TaqII GACCGA 1 cut(s) 1101
TatI WGTACW 2 cut(s) 789, 1430
TfiI GAWTC 5 cut(s) 347, 665, 699, 926, 1303
Tru1I TTAA 3 cut(s) 302, 1626, 1861
Tru9I TTAA 3 cut(s) 302, 1626, 1861
TscAI CASTG 4 cut(s) 562, 660, 991, 1651
TseFI GTSAC 4 cut(s) 742, 1471, 1501, 1591
TseI GCWGC 7 cut(s) 217, 516, 631, 711, 799, 904, 1148
Tsp45I GTSAC 4 cut(s) 742, 1471, 1501, 1591
TspDTI ATGAA 9 cut(s) 609, 740, 782, 1017, 1254, 1361, 1506, 1763, 1821
TspRI CASTG 4 cut(s) 562, 660, 991, 1651
Van91I CCANNNNNTGG 1 cut(s) 1346
VpaK11BI GGWCC 2 cut(s) 375, 1244
XapI RAATTY 3 cut(s) 19, 727, 1493
XceI RCATGY 4 cut(s) 575, 743, 862, 878
XmnI GAANNNNTTC 2 cut(s) 232, 1653
XspI CTAG 1 cut(s) 1260
Zsp2I ATGCAT 2 cut(s) 577, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.