Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001641

Physical Location & Seq

Genomic Coordinates Reverse (-)

3271890 .. 3272500

Gene Structure 611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG021000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCTGGAAAGAGATGGGACCCGAGTTTTGGTTCCAACTGCAGGAGGGTTTATGATTGAGCTGTTTGTCTCCAAAGATGTCTCCGAGGACCAGCATGTCATTGATTTCATCACAGCACAATGCAACATTTGGTGCGAGCAAGACACCCTGATCAGTGCAAGCAACACATGTAGTACAAACACCCCTGTATTTTCTCCATCAATGGCATCATTGGATCCTCATGATGCGAATTTGCCATACGATATCACAGTAGGTCGAATCCGCCTATGCTCTTCTGAGTCCTCTTCTCCATTGAACTTCCTACAACATGTCAGTAGTTACAACTCTGAGAATAGAATGAAGAATAGTACTGGTGCATGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

121

Amino Acids

13.26

Weight (kDa)

4.63

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16910
fragaria_vesca	FvH4_2g15460 FvH4_2g15460 FvH4_2g15470
malus_domestica	MD05G1122900.v1.1 MD05G1123000.v1.1 MD10G1125700.v1.1
prunus_persica	Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166900_v2.0.a1
pyrus_communis	pycom05g11720 pycom05g11750 pycom10g10820
rosa_chinensis	RchiOBHm_Chr6g0278441 RchiOBHm_Chr6g0278471
rosa_laevigata	RLG00000013226 RLG00000013228 RLG00000013381
rosa_multiflora	Rmu_sc0000258.1_g000003 Rmu_sc0000258.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229220 Rroxscaffold_7G00189870 Rroxscaffold_7G00189880 Rroxscaffold_7G00190350
rosa_rugosa	Rorug06G0006400 Rorug06G0117000 Rorug06G0117100.1
rosa_samantha	Rh1DG021000 Rh2DG345500 Rh2DG346800 Rh3AG263900 Rh3CG365900 Rh3DG372000 Rh5CG269300 Rh6AG226300 Rh6BG230500 Rh6CG233600 Rh6DG224900 Rh7AG412300 Rh7CG321300 Rh7DG336100
rosa_wichuraiana	Rw0G018390 Rw3G029150 Rw5G034840 Rw6G019740 Rw6G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	2 cut(s)	209, 222
AcsI	RAATTY	1 cut(s)	229
AfaI	GTAC	2 cut(s)	175, 349
AfiI	CCNNNNNNNGG	2 cut(s)	28, 41
AflIII	ACRYGT	2 cut(s)	167, 307
AgsI	TTSAA	1 cut(s)	295
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw26I	GTCTC	2 cut(s)	73, 85
AlwI	GGATC	2 cut(s)	209, 222
Ama87I	CYCGRG	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	229
ArsI	GACNNNNNNTTYG	2 cut(s)	10, 42
AspS9I	GGNCC	2 cut(s)	18, 88
AvaI	CYCGRG	1 cut(s)	21
AvaII	GGWCC	2 cut(s)	18, 88
BamHI	GGATCC	1 cut(s)	214
BccI	CCATC	2 cut(s)	8, 205
BclI	TGATCA	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	73, 85
BfmI	CTRYAG	1 cut(s)	39
BmcAI	AGTACT	1 cut(s)	349
Bme18I	GGWCC	2 cut(s)	18, 88
BmeT110I	CYCGRG	1 cut(s)	21
BmgT120I	GGNCC	2 cut(s)	18, 88
BmiI	GGNNCC	4 cut(s)	19, 20, 33, 216
BmsI	GCATC	2 cut(s)	214, 215
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 41
Bse1I	ACTGG	1 cut(s)	355
BseDI	CCNNGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	28, 41
BseMII	CTCAG	2 cut(s)	267, 318
BseNI	ACTGG	1 cut(s)	355
BsiHKCI	CYCGRG	1 cut(s)	21
BslFI	GGGAC	2 cut(s)	31, 345
BslI	CCNNNNNNNGG	2 cut(s)	28, 41
BsmAI	GTCTC	2 cut(s)	73, 85
BsmFI	GGGAC	2 cut(s)	31, 345
BsoBI	CYCGRG	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	150, 214
BspACI	CCGC	1 cut(s)	262
BspCNI	CTCAG	2 cut(s)	268, 319
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	4 cut(s)	19, 20, 33, 216
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	2 cut(s)	209, 222
BspQI	GCTCTTC	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	2 cut(s)	150, 214
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	2 cut(s)	277, 289
BstC8I	GCNNGC	2 cut(s)	137, 160
BstDEI	CTNAG	2 cut(s)	276, 327
BstKTI	GATC	2 cut(s)	153, 217
BstMAI	GTCTC	2 cut(s)	73, 85
BstMBI	GATC	2 cut(s)	150, 214
BstNSI	RCATGY	4 cut(s)	98, 171, 311, 360
BstSFI	CTRYAG	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	2 cut(s)	137, 160
CciI	TCATGA	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	18, 88
Csp6I	GTAC	2 cut(s)	174, 348
CviAII	CATG	5 cut(s)	95, 168, 221, 308, 357
CviJI	RGCY	1 cut(s)	61
CviKI_1	RGCY	1 cut(s)	61
CviQI	GTAC	2 cut(s)	174, 348
DdeI	CTNAG	2 cut(s)	276, 327
DpnI	GATC	2 cut(s)	152, 216
DpnII	GATC	2 cut(s)	150, 214
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	2 cut(s)	277, 289
EarI	CTCTTC	2 cut(s)	277, 289
EciI	GGCGGA	1 cut(s)	251
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	2 cut(s)	18, 88
Eco88I	CYCGRG	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRV	GATATC	1 cut(s)	244
FaeI	CATG	5 cut(s)	98, 171, 224, 311, 360
FaiI	YATR	8 cut(s)	53, 96, 169, 222, 238, 268, 309, 358
FaqI	GGGAC	2 cut(s)	31, 345
FatI	CATG	5 cut(s)	94, 167, 220, 307, 356
FbaI	TGATCA	1 cut(s)	150
Hin1II	CATG	5 cut(s)	98, 171, 224, 311, 360
HinfI	GANTC	2 cut(s)	258, 278
Hpy188I	TCNGA	3 cut(s)	85, 277, 328
Hpy188III	TCNNGA	1 cut(s)	221
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	4 cut(s)	41, 123, 158, 356
HpyF3I	CTNAG	2 cut(s)	276, 327
Hsp92II	CATG	5 cut(s)	98, 171, 224, 311, 360
KflI	GGGWCCC	1 cut(s)	18
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	150, 214
LguI	GCTCTTC	1 cut(s)	277
LpnPI	CCDG	5 cut(s)	27, 104, 161, 198, 336
LweI	GCATC	2 cut(s)	214, 215
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	2 cut(s)	152, 216
MboI	GATC	2 cut(s)	150, 214
MboII	GAAGA	3 cut(s)	264, 276, 352
MflI	RGATCY	1 cut(s)	214
MluCI	AATT	1 cut(s)	229
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	4 cut(s)	38, 79, 228, 292
NdeII	GATC	2 cut(s)	150, 214
NlaIII	CATG	5 cut(s)	98, 171, 224, 311, 360
NlaIV	GGNNCC	4 cut(s)	19, 20, 33, 216
NspI	RCATGY	4 cut(s)	98, 171, 311, 360
PagI	TCATGA	1 cut(s)	220
PciI	ACATGT	2 cut(s)	167, 307
PciSI	GCTCTTC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	258
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PpuMI	RGGWCCY	1 cut(s)	18
PscI	ACATGT	2 cut(s)	167, 307
Psp5II	RGGWCCY	1 cut(s)	18
PspN4I	GGNNCC	4 cut(s)	19, 20, 33, 216
PspPI	GGNCC	2 cut(s)	18, 88
PspPPI	RGGWCCY	1 cut(s)	18
PstI	CTGCAG	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	2 cut(s)	175, 349
RsaNI	GTAC	2 cut(s)	174, 348
SapI	GCTCTTC	1 cut(s)	277
Sau3AI	GATC	2 cut(s)	150, 214
Sau96I	GGNCC	2 cut(s)	18, 88
ScaI	AGTACT	1 cut(s)	349
SchI	GAGTC	1 cut(s)	287
SetI	ASST	2 cut(s)	63, 256
SfaNI	GCATC	2 cut(s)	214, 215
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	2 cut(s)	18, 88
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	256
TasI	AATT	1 cut(s)	229
TatI	WGTACW	2 cut(s)	173, 347
TfiI	GAWTC	1 cut(s)	258
TscAI	CASTG	1 cut(s)	160
TspDTI	ATGAA	2 cut(s)	97, 353
TspRI	CASTG	1 cut(s)	160
VpaK11BI	GGWCC	2 cut(s)	18, 88
XapI	RAATTY	1 cut(s)	229
XceI	RCATGY	4 cut(s)	98, 171, 311, 360
ZrmI	AGTACT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.