Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001641

Physical Location & Seq

Genomic Coordinates Forward (+)

28948006 .. 28965025

Gene Structure 17020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG269300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGATTGAGCTGTTTGTCTCCAAAGATGTCTCCGAGGACCAGCATGTCATTGATTTCATCACAGCACAATGCAACATTTGGTGTGAGCAAGACACCCTGATCAGTGCAAGCAACACATGTAGTACAAACACCCCTGTATTTTCCCCATCAATGGCATCATTGGATCCTCATGATGCGAATTTGCCATACGATATCACAGAGCGTGGAGCTGGAATCGGGTACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

75

Amino Acids

8.28

Weight (kDa)

4.14

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16910
fragaria_vesca	FvH4_2g15460 FvH4_2g15460 FvH4_2g15470
malus_domestica	MD05G1122900.v1.1 MD05G1123000.v1.1 MD10G1125700.v1.1
prunus_persica	Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166900_v2.0.a1
pyrus_communis	pycom05g11720 pycom05g11750 pycom10g10820
rosa_chinensis	RchiOBHm_Chr6g0278441 RchiOBHm_Chr6g0278471
rosa_laevigata	RLG00000013226 RLG00000013228 RLG00000013381
rosa_multiflora	Rmu_sc0000258.1_g000003 Rmu_sc0000258.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229220 Rroxscaffold_7G00189870 Rroxscaffold_7G00189880 Rroxscaffold_7G00190350
rosa_rugosa	Rorug06G0006400 Rorug06G0117000 Rorug06G0117100.1
rosa_samantha	Rh1DG021000 Rh2DG345500 Rh2DG346800 Rh3AG263900 Rh3CG365900 Rh3DG372000 Rh5CG269300 Rh6AG226300 Rh6BG230500 Rh6CG233600 Rh6DG224900 Rh7AG412300 Rh7CG321300 Rh7DG336100
rosa_wichuraiana	Rw0G018390 Rw3G029150 Rw5G034840 Rw6G019740 Rw6G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AclWI	GGATC	2 cut(s)	158, 171
AcsI	RAATTY	1 cut(s)	178
AfaI	GTAC	2 cut(s)	124, 221
AfiI	CCNNNNNNNGG	1 cut(s)	151
AflIII	ACRYGT	1 cut(s)	116
AluBI	AGCT	2 cut(s)	10, 209
AluI	AGCT	2 cut(s)	10, 209
Alw26I	GTCTC	2 cut(s)	22, 34
AlwI	GGATC	2 cut(s)	158, 171
ApoI	RAATTY	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	37
BamHI	GGATCC	1 cut(s)	163
BccI	CCATC	1 cut(s)	154
BclI	TGATCA	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	22, 34
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	165
BmsI	GCATC	2 cut(s)	163, 164
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	2 cut(s)	22, 34
Bsp143I	GATC	2 cut(s)	99, 163
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	165
BspPI	GGATC	2 cut(s)	158, 171
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	99, 163
BstC8I	GCNNGC	1 cut(s)	109
BstKTI	GATC	2 cut(s)	102, 166
BstMAI	GTCTC	2 cut(s)	22, 34
BstMBI	GATC	2 cut(s)	99, 163
BstNSI	RCATGY	2 cut(s)	47, 120
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	123, 220
CviAII	CATG	3 cut(s)	44, 117, 170
CviJI	RGCY	2 cut(s)	10, 209
CviKI_1	RGCY	2 cut(s)	10, 209
CviQI	GTAC	2 cut(s)	123, 220
DpnI	GATC	2 cut(s)	101, 165
DpnII	GATC	2 cut(s)	99, 163
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	37
EcoRV	GATATC	1 cut(s)	193
FaeI	CATG	3 cut(s)	47, 120, 173
FaiI	YATR	4 cut(s)	45, 118, 171, 187
FatI	CATG	3 cut(s)	43, 116, 169
FbaI	TGATCA	1 cut(s)	99
Hin1II	CATG	3 cut(s)	47, 120, 173
HinfI	GANTC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	1 cut(s)	170
HpyCH4V	TGCA	2 cut(s)	72, 107
Hsp92II	CATG	3 cut(s)	47, 120, 173
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	99, 163
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	5 cut(s)	53, 110, 147, 195, 208
LweI	GCATC	2 cut(s)	163, 164
MalI	GATC	2 cut(s)	101, 165
MboI	GATC	2 cut(s)	99, 163
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	1 cut(s)	178
MnlI	CCTC	2 cut(s)	28, 177
NdeII	GATC	2 cut(s)	99, 163
NlaIII	CATG	3 cut(s)	47, 120, 173
NlaIV	GGNNCC	1 cut(s)	165
NspI	RCATGY	2 cut(s)	47, 120
PagI	TCATGA	1 cut(s)	169
PciI	ACATGT	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	213
PscI	ACATGT	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	2 cut(s)	124, 221
RsaNI	GTAC	2 cut(s)	123, 220
Sau3AI	GATC	2 cut(s)	99, 163
Sau96I	GGNCC	1 cut(s)	37
SetI	ASST	3 cut(s)	12, 211, 227
SfaNI	GCATC	2 cut(s)	163, 164
SinI	GGWCC	1 cut(s)	37
Sse9I	AATT	1 cut(s)	178
TasI	AATT	1 cut(s)	178
TatI	WGTACW	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	213
TscAI	CASTG	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	46
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	2 cut(s)	47, 120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.