Rh3DG372000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
47472833 .. 47477481
4649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG372000.1

Sequence Viewer

Length: 393 bp
ATGGGTAAGACTGAGGGGCCGGGTACGAAAGAATCAGAGGAATTCAAGACGGTTTTAGCAACGCCCTTAACCAAAGACTCTGAGTGTGAAGGTAAATCAAGAATGCTCGAGAAGACATTTTGGACGGGCTGCAACAGTTCCATAGAGAAACTTCTGCTGTTGAATCAATACTATAAGGATAAATTCTCTTTGGAAGTTCGAGACTTCATCGGTAAAGTGGCTTATTGTTGGAGTATGGATTTCTGTGGTTTGGTAATGGGGATCTATTTGAATGACGAAAGAGTAGCATTTCTACTGATATTGAGACACTTGAACAAAATTAAAGAAATCGCAGGGGTCAAGACTGCATTATACTTGGACATCATCTATGTAGTAGATATTTACAATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.92

Weight (kDa)

5.87

Isoelectric Point (pI)

27.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 269
AcsI RAATTY 2 cut(s) 41, 182
AfaI GTAC 1 cut(s) 25
AgsI TTSAA 4 cut(s) 46, 163, 271, 313
Alw26I GTCTC 2 cut(s) 195, 298
AlwI GGATC 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 107
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 129
ApoI RAATTY 2 cut(s) 41, 182
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 21
AvaI CYCGRG 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 116
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 2 cut(s) 195, 298
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 21
BpiI GAAGAC 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 72
BseXI GCAGC 1 cut(s) 116
BshFI GGCC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 1 cut(s) 20
BsmAI GTCTC 2 cut(s) 195, 298
BsmI GAATGC 1 cut(s) 108
BsnI GGCC 1 cut(s) 19
BsoBI CYCGRG 1 cut(s) 107
Bsp143I GATC 1 cut(s) 261
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 2 cut(s) 4, 73
BspLI GGNNCC 1 cut(s) 18
BspPI GGATC 1 cut(s) 269
BssMI GATC 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 52, 137
BstDEI CTNAG 2 cut(s) 12, 81
BstKTI GATC 1 cut(s) 264
BstMAI GTCTC 2 cut(s) 195, 298
BstMBI GATC 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 116
BstV2I GAAGAC 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BsuRI GGCC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 24
CviJI RGCY 3 cut(s) 19, 129, 221
CviKI_1 RGCY 3 cut(s) 19, 129, 221
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 2 cut(s) 12, 81
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 41
FaiI YATR 6 cut(s) 143, 174, 236, 352, 369, 391
Fnu4HI GCNGC 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 130
GluI GCNGC 1 cut(s) 130
HaeIII GGCC 1 cut(s) 19
HapII CCGG 1 cut(s) 20
HinfI GANTC 3 cut(s) 32, 77, 163
HpaII CCGG 1 cut(s) 20
Hpy188I TCNGA 2 cut(s) 37, 82
Hpy188III TCNNGA 5 cut(s) 46, 99, 109, 200, 340
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 2 cut(s) 52, 137
HpyCH4V TGCA 2 cut(s) 132, 347
HpyF3I CTNAG 2 cut(s) 12, 81
Kzo9I GATC 1 cut(s) 261
LpnPI CCDG 2 cut(s) 33, 318
Lsp1109I GCAGC 1 cut(s) 116
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 1 cut(s) 124
MflI RGATCY 1 cut(s) 261
MluCI AATT 4 cut(s) 41, 182, 318, 385
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 2 cut(s) 7, 31
MseI TTAA 2 cut(s) 68, 321
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 108
NciI CCSGG 1 cut(s) 21
NdeII GATC 1 cut(s) 261
NlaIV GGNNCC 1 cut(s) 18
PaeR7I CTCGAG 1 cut(s) 107
PctI GAATGC 1 cut(s) 108
PfeI GAWTC 2 cut(s) 32, 163
PkrI GCNGC 1 cut(s) 131
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 261
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 68, 321
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 1 cut(s) 261
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 21
SetI ASST 1 cut(s) 94
Sfr274I CTCGAG 1 cut(s) 107
SlaI CTCGAG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 4 cut(s) 41, 182, 318, 385
StyD4I CCNGG 1 cut(s) 19
TaaI ACNGT 2 cut(s) 52, 137
TaqI TCGA 2 cut(s) 108, 199
TasI AATT 4 cut(s) 41, 182, 318, 385
TfiI GAWTC 2 cut(s) 32, 163
Tru1I TTAA 2 cut(s) 68, 321
Tru9I TTAA 2 cut(s) 68, 321
TseI GCWGC 1 cut(s) 129
TspDTI ATGAA 1 cut(s) 196
XapI RAATTY 2 cut(s) 41, 182
XhoI CTCGAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.