Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001641

Physical Location & Seq

Genomic Coordinates Forward (+)

43797571 .. 43811124

Gene Structure 13554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG336100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCCCTTAGACTCTGGGATTTATGCAAAAACATTTATGTCAAACCAGCCCTGTTGGTTGAACTGTTCCTCTAGTAACAGAGATTCAAGTGCTATGCTGGAAAGAGATGGGACCCGAGTTTTGGTTCCAACTGCAGGAGGGTTTATGATTGAGCTGTTTGTCTCCAAAGATGTCTCCGAGGACCAGCATGTCATTGATTTCATCACAGCACAATGCAACATTTGGTGCGAGCAAGACACCCTGATCAGTGCAAGCAACACATGTAGTACAAACACCCCTGTATTTTCCCCATCAATGGCATCATTGGATCCTCATGATGCGAATTTGCCATACGATATCACAGTAGGTCGAATCCGCCTATGCTCTTCTGAGTCCTCTTCTCCATTAATTGAACTTCCTACAACATGTAAATCAAGAATGCTCGAGAAGACATTTTGGACGGGCTGCAACAGTTCCATAGAGAAACTTCTGCTGTTGAATCAATATTATAAGGATAAATTCTCTTTGGAAGTTGGAGGTTATTCAGTGATTAGAGTGAAGGTTCAGTTTAATAACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

186

Amino Acids

20.69

Weight (kDa)

4.99

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16910
fragaria_vesca	FvH4_2g15460 FvH4_2g15460 FvH4_2g15470
malus_domestica	MD05G1122900.v1.1 MD05G1123000.v1.1 MD10G1125700.v1.1
prunus_persica	Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166900_v2.0.a1
pyrus_communis	pycom05g11720 pycom05g11750 pycom10g10820
rosa_chinensis	RchiOBHm_Chr6g0278441 RchiOBHm_Chr6g0278471
rosa_laevigata	RLG00000013226 RLG00000013228 RLG00000013381
rosa_multiflora	Rmu_sc0000258.1_g000003 Rmu_sc0000258.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229220 Rroxscaffold_7G00189870 Rroxscaffold_7G00189880 Rroxscaffold_7G00190350
rosa_rugosa	Rorug06G0006400 Rorug06G0117000 Rorug06G0117100.1
rosa_samantha	Rh1DG021000 Rh2DG345500 Rh2DG346800 Rh3AG263900 Rh3CG365900 Rh3DG372000 Rh5CG269300 Rh6AG226300 Rh6BG230500 Rh6CG233600 Rh6DG224900 Rh7AG412300 Rh7CG321300 Rh7DG336100
rosa_wichuraiana	Rw0G018390 Rw3G029150 Rw5G034840 Rw6G019740 Rw6G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	489
AasI	GACNNNNNNGTC	1 cut(s)	188
AciI	CCGC	1 cut(s)	355
AclWI	GGATC	2 cut(s)	302, 315
AcsI	RAATTY	2 cut(s)	322, 497
AfaI	GTAC	1 cut(s)	268
AfiI	CCNNNNNNNGG	3 cut(s)	121, 134, 295
AflIII	ACRYGT	2 cut(s)	260, 404
AgsI	TTSAA	4 cut(s)	61, 87, 392, 478
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw26I	GTCTC	2 cut(s)	166, 178
AlwI	GGATC	2 cut(s)	302, 315
Ama87I	CYCGRG	2 cut(s)	114, 422
ApeKI	GCWGC	1 cut(s)	444
ApoI	RAATTY	2 cut(s)	322, 497
ArsI	GACNNNNNNTTYG	2 cut(s)	103, 135
AseI	ATTAAT	1 cut(s)	386
AspS9I	GGNCC	2 cut(s)	111, 181
AvaI	CYCGRG	2 cut(s)	114, 422
AvaII	GGWCC	2 cut(s)	111, 181
BamHI	GGATCC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	434
BbvI	GCAGC	1 cut(s)	431
BccI	CCATC	2 cut(s)	101, 298
BclI	TGATCA	1 cut(s)	243
BcoDI	GTCTC	2 cut(s)	166, 178
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	1 cut(s)	445
BlsI	GCNGC	1 cut(s)	446
Bme18I	GGWCC	2 cut(s)	111, 181
BmeT110I	CYCGRG	2 cut(s)	114, 422
BmgT120I	GGNCC	2 cut(s)	111, 181
BmiI	GGNNCC	4 cut(s)	112, 113, 126, 309
BmsI	GCATC	2 cut(s)	307, 308
BpiI	GAAGAC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 134, 295
BseDI	CCNNGG	1 cut(s)	177
BseLI	CCNNNNNNNGG	3 cut(s)	121, 134, 295
BseMII	CTCAG	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	431
BsiHKCI	CYCGRG	2 cut(s)	114, 422
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	3 cut(s)	121, 134, 295
BsmAI	GTCTC	2 cut(s)	166, 178
BsmFI	GGGAC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	423
BsoBI	CYCGRG	2 cut(s)	114, 422
Bsp143I	GATC	2 cut(s)	243, 307
BspACI	CCGC	1 cut(s)	355
BspCNI	CTCAG	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	4 cut(s)	112, 113, 126, 309
BspMAI	CTGCAG	1 cut(s)	136
BspPI	GGATC	2 cut(s)	302, 315
BspQI	GCTCTTC	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	243, 307
Bst4CI	ACNGT	4 cut(s)	65, 343, 452, 557
Bst6I	CTCTTC	2 cut(s)	370, 382
BstC8I	GCNNGC	2 cut(s)	230, 253
BstDEI	CTNAG	2 cut(s)	7, 369
BstKTI	GATC	2 cut(s)	246, 310
BstMAI	GTCTC	2 cut(s)	166, 178
BstMBI	GATC	2 cut(s)	243, 307
BstNSI	RCATGY	3 cut(s)	191, 264, 408
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	431
BstV2I	GAAGAC	1 cut(s)	434
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	253, 531
Cac8I	GCNNGC	2 cut(s)	230, 253
CciI	TCATGA	1 cut(s)	313
Cfr13I	GGNCC	2 cut(s)	111, 181
Csp6I	GTAC	1 cut(s)	267
CviAII	CATG	4 cut(s)	188, 261, 314, 405
CviJI	RGCY	3 cut(s)	49, 154, 444
CviKI_1	RGCY	3 cut(s)	49, 154, 444
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	2 cut(s)	7, 369
DpnI	GATC	2 cut(s)	245, 309
DpnII	GATC	2 cut(s)	243, 307
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Eam1104I	CTCTTC	2 cut(s)	370, 382
EarI	CTCTTC	2 cut(s)	370, 382
EciI	GGCGGA	1 cut(s)	344
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	2 cut(s)	111, 181
Eco88I	CYCGRG	2 cut(s)	114, 422
EcoO109I	RGGNCCY	1 cut(s)	111
EcoRV	GATATC	1 cut(s)	337
FaeI	CATG	4 cut(s)	191, 264, 317, 408
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	4 cut(s)	187, 260, 313, 404
FbaI	TGATCA	1 cut(s)	243
Fnu4HI	GCNGC	1 cut(s)	445
Fsp4HI	GCNGC	1 cut(s)	445
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	1 cut(s)	445
Hin1II	CATG	4 cut(s)	191, 264, 317, 408
HinfI	GANTC	5 cut(s)	11, 83, 351, 371, 478
Hpy188I	TCNGA	2 cut(s)	178, 370
Hpy188III	TCNNGA	3 cut(s)	314, 414, 424
HpyAV	CCTTC	1 cut(s)	532
HpyCH4III	ACNGT	4 cut(s)	65, 343, 452, 557
HpyCH4V	TGCA	5 cut(s)	26, 134, 216, 251, 447
HpyF3I	CTNAG	2 cut(s)	7, 369
Hsp92II	CATG	4 cut(s)	191, 264, 317, 408
KflI	GGGWCCC	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	243, 307
LguI	GCTCTTC	1 cut(s)	370
LpnPI	CCDG	7 cut(s)	59, 64, 83, 120, 197, 254, 291
Lsp1109I	GCAGC	1 cut(s)	431
LweI	GCATC	2 cut(s)	307, 308
MaeI	CTAG	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	2 cut(s)	245, 309
MboI	GATC	2 cut(s)	243, 307
MboII	GAAGA	3 cut(s)	357, 369, 439
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	3 cut(s)	322, 387, 497
MlyI	GAGTC	2 cut(s)	5, 380
MmeI	TCCRAC	2 cut(s)	152, 493
MnlI	CCTC	6 cut(s)	79, 131, 172, 321, 385, 509
MseI	TTAA	3 cut(s)	386, 549, 559
Mva1269I	GAATGC	1 cut(s)	423
NdeII	GATC	2 cut(s)	243, 307
NlaIII	CATG	4 cut(s)	191, 264, 317, 408
NlaIV	GGNNCC	4 cut(s)	112, 113, 126, 309
NspI	RCATGY	3 cut(s)	191, 264, 408
PaeR7I	CTCGAG	1 cut(s)	422
PagI	TCATGA	1 cut(s)	313
PciI	ACATGT	2 cut(s)	260, 404
PciSI	GCTCTTC	1 cut(s)	370
PctI	GAATGC	1 cut(s)	423
PfeI	GAWTC	3 cut(s)	83, 351, 478
PkrI	GCNGC	1 cut(s)	446
PleI	GAGTC	2 cut(s)	5, 379
PpsI	GAGTC	2 cut(s)	5, 379
PpuMI	RGGWCCY	1 cut(s)	111
PscI	ACATGT	2 cut(s)	260, 404
PshBI	ATTAAT	1 cut(s)	386
PsiI	TTATAA	1 cut(s)	489
Psp5II	RGGWCCY	1 cut(s)	111
PspN4I	GGNNCC	4 cut(s)	112, 113, 126, 309
PspPI	GGNCC	2 cut(s)	111, 181
PspPPI	RGGWCCY	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	370
SaqAI	TTAA	3 cut(s)	386, 549, 559
SatI	GCNGC	1 cut(s)	445
Sau3AI	GATC	2 cut(s)	243, 307
Sau96I	GGNCC	2 cut(s)	111, 181
SchI	GAGTC	2 cut(s)	5, 380
SetI	ASST	4 cut(s)	156, 349, 520, 543
SfaNI	GCATC	2 cut(s)	307, 308
SfcI	CTRYAG	1 cut(s)	132
Sfr274I	CTCGAG	1 cut(s)	422
SinI	GGWCC	2 cut(s)	111, 181
SlaI	CTCGAG	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	3 cut(s)	322, 387, 497
SsiI	CCGC	1 cut(s)	355
SspI	AATATT	1 cut(s)	485
SspMI	CTAG	1 cut(s)	72
TaaI	ACNGT	4 cut(s)	65, 343, 452, 557
TaqI	TCGA	2 cut(s)	349, 423
TasI	AATT	3 cut(s)	322, 387, 497
TatI	WGTACW	1 cut(s)	266
TfiI	GAWTC	3 cut(s)	83, 351, 478
Tru1I	TTAA	3 cut(s)	386, 549, 559
Tru9I	TTAA	3 cut(s)	386, 549, 559
TscAI	CASTG	2 cut(s)	253, 531
TseI	GCWGC	1 cut(s)	444
TspDTI	ATGAA	1 cut(s)	190
TspRI	CASTG	2 cut(s)	253, 531
VpaK11BI	GGWCC	2 cut(s)	111, 181
VspI	ATTAAT	1 cut(s)	386
XapI	RAATTY	2 cut(s)	322, 497
XceI	RCATGY	3 cut(s)	191, 264, 408
XhoI	CTCGAG	1 cut(s)	422
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.