Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000258.1

Orthogroup ID

OG0001641

Physical Location & Seq

Genomic Coordinates Forward (+)

9216 .. 11757

Gene Structure 2542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000258.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1647 bp

atgactatgtataatctgataattgagaggcttagaccccttgtgggtttgaaaggctgggattattgtgttctctggaagttaagtgaagaccaaaggttcattgagtggattggttgctgctgttctgggattgatgaggacacccagaatggtggacaagaacttctgtttccagtttatcaagtctttcagtgcagggatacaatgcagcactcaagaactaattcttgtgatatcctttctcgtcttccttcttcaatccccttagactctgggatttatgcaaaaaccatgacgtcaaaccagccctgttggttgaactgctcctctggtaacagagattcaagtgctacgatagaaagagatgggaccctagttttggttccaactgcaggagggttaatgattgagctgttcgtctctaaagatgtctctgagaaccagcaagtcattgatttcatcacagcacaatgcaacatttggcgcgagcaagacaccctgatcagtgcaagcaacacatgtagtacaaacacccctgtactttccccatcaatggcatcattggatcctcatgatgcgaatttgccatacaatatcacagttgatcgaatccgcctatgctcttctgagtcctcttctccattgaacttcctgcaacatgtcactagttacaactctgagaacagaatgaggaacagtactagtgaatgtaattatgaccagggtaattcacatgagtactctttggatcagccattagaaaacatgaagcaacaaggtactctggatgatcaggattcgataaaaccagcagaccattcagtttcagattgcagtgaccaaactgatgacacaaattataaaacaagaaatggaaaagagcctcaatccaaaaaccttgttgctgagaggaagagaaggaagaagcttaacgaaaaactctataaacttcgctctttggttcccaacatttctaagatggacaaggcttcgattctcaaggatgcgattgattttgtcaaggacttgcagagacaagtgaaagaactccaagatgtgcttgaacataattcaaatgaagaaggaggagctaagagaacttttaatagtatctctagaaatcacaacaattaccagtcagagggtctgaatcaacatggaatttccatggcaaataaaccaaaaagtgacaaccctcaaaacggctttcgtgactcggatcataatactaatgagaagggacaacagcagatggagccacaagtgggagtaactcagttagacggcaacgagttctttgtgacagtgttctgtgagcagaagccagaagggtttgtgagactgatggaggcattggatagtttaggcttggaagtgactaatgcaaacgttactagcttcagaagccttgtctctaatgtgtttaaagtagagaaaagggacagtgaaatactgcaagctgatgaagtgagggactctttgatagagataacgcggaatccctcgaaagggtactggcctgagatggcgaaaacatctgggaatgatggtgctttggactatgatcatgataagcatcactaccaccatcacctccacaactaccatagtcctccatatcatgttcgacatctttataattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

548

Amino Acids

62.29

Weight (kDa)

5.47

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16910
fragaria_vesca	FvH4_2g15460 FvH4_2g15460 FvH4_2g15470
malus_domestica	MD05G1122900.v1.1 MD05G1123000.v1.1 MD10G1125700.v1.1
prunus_persica	Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166900_v2.0.a1
pyrus_communis	pycom05g11720 pycom05g11750 pycom10g10820
rosa_chinensis	RchiOBHm_Chr6g0278441 RchiOBHm_Chr6g0278471
rosa_laevigata	RLG00000013226 RLG00000013228 RLG00000013381
rosa_multiflora	Rmu_sc0000258.1_g000003 Rmu_sc0000258.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229220 Rroxscaffold_7G00189870 Rroxscaffold_7G00189880 Rroxscaffold_7G00190350
rosa_rugosa	Rorug06G0006400 Rorug06G0117000 Rorug06G0117100.1
rosa_samantha	Rh1DG021000 Rh2DG345500 Rh2DG346800 Rh3AG263900 Rh3CG365900 Rh3DG372000 Rh5CG269300 Rh6AG226300 Rh6BG230500 Rh6CG233600 Rh6DG224900 Rh7AG412300 Rh7CG321300 Rh7DG336100
rosa_wichuraiana	Rw0G018390 Rw3G029150 Rw5G034840 Rw6G019740 Rw6G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	864, 1641
AatII	GACGTC	1 cut(s)	302
AccII	CGCG	2 cut(s)	489, 1498
AciI	CCGC	2 cut(s)	616, 1498
AclI	AACGTT	1 cut(s)	1392
AclWI	GGATC	4 cut(s)	563, 576, 759, 1230
AcsI	RAATTY	2 cut(s)	583, 1164
AcuI	CTGAAG	1 cut(s)	1387
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	6 cut(s)	529, 543, 703, 743, 784, 1517
AfiI	CCNNNNNNNGG	9 cut(s)	44, 382, 395, 556, 1144, 1205, 1268, 1511, 1512
AflIII	ACRYGT	2 cut(s)	521, 661
AgsI	TTSAA	7 cut(s)	52, 261, 322, 348, 649, 1067, 1077
AhlI	ACTAGT	2 cut(s)	668, 704
AjnI	CCWGG	1 cut(s)	723
AluBI	AGCT	5 cut(s)	415, 931, 1094, 1401, 1463
AluI	AGCT	5 cut(s)	415, 931, 1094, 1401, 1463
Alw26I	GTCTC	5 cut(s)	427, 439, 1030, 1336, 1420
AlwI	GGATC	4 cut(s)	563, 576, 759, 1230
AoxI	GGCC	1 cut(s)	1520
ApeKI	GCWGC	2 cut(s)	120, 211
ApoI	RAATTY	2 cut(s)	583, 1164
ArsI	GACNNNNNNTTYG	2 cut(s)	364, 396
Asp700I	GAANNNNTTC	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	1 cut(s)	372
AsuHPI	GGTGA	1 cut(s)	1586
AvaII	GGWCC	1 cut(s)	372
BamHI	GGATCC	1 cut(s)	568
BbsI	GAAGAC	2 cut(s)	96, 242
BbvI	GCAGC	2 cut(s)	107, 223
BccI	CCATC	8 cut(s)	362, 559, 976, 1249, 1342, 1522, 1544, 1599
BceAI	ACGGC	2 cut(s)	1222, 1303
BciT130I	CCWGG	1 cut(s)	725
BciVI	GTATCC	1 cut(s)	196
BclI	TGATCA	3 cut(s)	504, 793, 1567
BcoDI	GTCTC	5 cut(s)	427, 439, 1030, 1336, 1420
BcuI	ACTAGT	2 cut(s)	668, 704
BfaI	CTAG	5 cut(s)	377, 669, 705, 1119, 1398
BfmI	CTRYAG	1 cut(s)	393
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	2 cut(s)	121, 212
BlsI	GCNGC	2 cut(s)	122, 213
BmcAI	AGTACT	2 cut(s)	703, 743
Bme1390I	CCNGG	1 cut(s)	725
Bme18I	GGWCC	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	372
BmiI	GGNNCC	6 cut(s)	373, 374, 387, 570, 966, 1260
BmrFI	CCNGG	1 cut(s)	725
BmsI	GCATC	4 cut(s)	568, 569, 997, 1588
BpiI	GAAGAC	2 cut(s)	96, 242
BpuEI	CTTGAG	2 cut(s)	202, 986
BsaBI	GATNNNNATC	1 cut(s)	1578
BsaHI	GRCGYC	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	724, 1170
Bsc4I	CCNNNNNNNGG	9 cut(s)	44, 382, 395, 556, 1144, 1205, 1268, 1511, 1512
Bse1I	ACTGG	3 cut(s)	176, 1138, 1523
Bse8I	GATNNNNATC	1 cut(s)	1578
BseBI	CCWGG	1 cut(s)	725
BseDI	CCNNGG	2 cut(s)	724, 1170
BseGI	GGATG	2 cut(s)	796, 1012
BseJI	GATNNNNATC	1 cut(s)	1578
BseLI	CCNNNNNNNGG	9 cut(s)	44, 382, 395, 556, 1144, 1205, 1268, 1511, 1512
BseMII	CTCAG	6 cut(s)	429, 621, 672, 900, 1292, 1515
BseNI	ACTGG	3 cut(s)	176, 1138, 1523
BseRI	GAGGAG	2 cut(s)	319, 1104
BseXI	GCAGC	2 cut(s)	107, 223
BseYI	CCCAGC	1 cut(s)	57
BsgI	GTGCAG	1 cut(s)	217
Bsh1236I	CGCG	2 cut(s)	489, 1498
BshFI	GGCC	1 cut(s)	1522
BslFI	GGGAC	4 cut(s)	385, 1257, 1457, 1490
BslI	CCNNNNNNNGG	9 cut(s)	44, 382, 395, 556, 1144, 1205, 1268, 1511, 1512
BsmAI	GTCTC	5 cut(s)	427, 439, 1030, 1336, 1420
BsmBI	CGTCTC	1 cut(s)	427
BsmFI	GGGAC	4 cut(s)	385, 1257, 1457, 1490
BsnI	GGCC	1 cut(s)	1522
Bsp143I	GATC	7 cut(s)	504, 568, 607, 751, 793, 1222, 1567
Bsp19I	CCATGG	1 cut(s)	1170
BspACI	CCGC	2 cut(s)	616, 1498
BspANI	GGCC	1 cut(s)	1522
BspCNI	CTCAG	6 cut(s)	430, 622, 673, 901, 1291, 1516
BspFNI	CGCG	2 cut(s)	489, 1498
BspHI	TCATGA	2 cut(s)	574, 1570
BspLI	GGNNCC	6 cut(s)	373, 374, 387, 570, 966, 1260
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	4 cut(s)	563, 576, 759, 1230
BspQI	GCTCTTC	1 cut(s)	631
BsrI	ACTGG	3 cut(s)	176, 1138, 1523
BssECI	CCNNGG	2 cut(s)	724, 1170
BssMI	GATC	7 cut(s)	504, 568, 607, 751, 793, 1222, 1567
BssNI	GRCGYC	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	1170
Bst2UI	CCWGG	1 cut(s)	725
Bst4CI	ACNGT	4 cut(s)	604, 701, 1309, 1448
Bst6I	CTCTTC	3 cut(s)	631, 643, 911
BstACI	GRCGYC	1 cut(s)	299
BstC8I	GCNNGC	3 cut(s)	491, 514, 1461
BstDSI	CCRYGG	1 cut(s)	1170
BstF5I	GGATG	2 cut(s)	796, 1012
BstFNI	CGCG	2 cut(s)	489, 1498
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	7 cut(s)	507, 571, 610, 754, 796, 1225, 1570
BstMAI	GTCTC	5 cut(s)	427, 439, 1030, 1336, 1420
BstMBI	GATC	7 cut(s)	504, 568, 607, 751, 793, 1222, 1567
BstMWI	GCNNNNNNNGC	2 cut(s)	1258, 1407
BstNI	CCWGG	1 cut(s)	725
BstNSI	RCATGY	2 cut(s)	525, 665
BstSCI	CCNGG	1 cut(s)	723
BstSFI	CTRYAG	1 cut(s)	393
BstUI	CGCG	2 cut(s)	489, 1498
BstV1I	GCAGC	2 cut(s)	107, 223
BstV2I	GAAGAC	2 cut(s)	96, 242
BstX2I	RGATCY	1 cut(s)	568
BstXI	CCANNNNNNTGG	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	568
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	1522
BtgI	CCRYGG	1 cut(s)	1170
BtsCI	GGATG	2 cut(s)	796, 1012
BtsI	GCAGTG	1 cut(s)	844
BtsIMutI	CAGTG	5 cut(s)	200, 514, 844, 1314, 1453
Cac8I	GCNNGC	3 cut(s)	491, 514, 1461
CciI	TCATGA	2 cut(s)	574, 1570
CfoI	GCGC	1 cut(s)	489
Cfr13I	GGNCC	1 cut(s)	372
Csp6I	GTAC	6 cut(s)	528, 542, 702, 742, 783, 1516
CviQI	GTAC	6 cut(s)	528, 542, 702, 742, 783, 1516
DpnI	GATC	7 cut(s)	506, 570, 609, 753, 795, 1224, 1569
DpnII	GATC	7 cut(s)	504, 568, 607, 751, 793, 1222, 1567
DraI	TTTAAA	1 cut(s)	1429
Eam1104I	CTCTTC	3 cut(s)	631, 643, 911
EarI	CTCTTC	3 cut(s)	631, 643, 911
EciI	GGCGGA	1 cut(s)	605
Eco130I	CCWWGG	1 cut(s)	1170
Eco32I	GATATC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	1387
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	723
EcoRV	GATATC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	1170
ErhI	CCWWGG	1 cut(s)	1170
Esp3I	CGTCTC	1 cut(s)	427
FalI	AAGNNNNNCTT	2 cut(s)	1047, 1079
FaqI	GGGAC	4 cut(s)	385, 1257, 1457, 1490
FbaI	TGATCA	3 cut(s)	504, 793, 1567
Fnu4HI	GCNGC	2 cut(s)	121, 212
FokI	GGATG	2 cut(s)	803, 1019
Fsp4HI	GCNGC	2 cut(s)	121, 212
FspBI	CTAG	5 cut(s)	377, 669, 705, 1119, 1398
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	2 cut(s)	121, 212
GsaI	CCCAGC	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	1522
HhaI	GCGC	1 cut(s)	489
Hin1I	GRCGYC	1 cut(s)	299
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HindIII	AAGCTT	1 cut(s)	929
HphI	GGTGA	1 cut(s)	1586
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	9 cut(s)	18, 439, 631, 682, 832, 1144, 1152, 1222, 1406
Hpy188III	TCNNGA	8 cut(s)	76, 219, 575, 788, 797, 1119, 1214, 1571
Hpy8I	GTNNAC	1 cut(s)	158
HpyAV	CCTTC	5 cut(s)	264, 915, 1079, 1234, 1325
HpyCH4III	ACNGT	4 cut(s)	604, 701, 1309, 1448
HpyCH4IV	ACGT	2 cut(s)	299, 1392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1258, 1407
HpySE526I	ACGT	2 cut(s)	299, 1392
Hsp92I	GRCGYC	1 cut(s)	299
HspAI	GCGC	1 cut(s)	487
KflI	GGGWCCC	1 cut(s)	372
Ksp22I	TGATCA	3 cut(s)	504, 793, 1567
Kzo9I	GATC	7 cut(s)	504, 568, 607, 751, 793, 1222, 1567
LguI	GCTCTTC	1 cut(s)	631
LmnI	GCTCC	3 cut(s)	332, 1091, 1258
Lsp1109I	GCAGC	2 cut(s)	107, 223
LweI	GCATC	4 cut(s)	568, 569, 997, 1588
MaeI	CTAG	5 cut(s)	377, 669, 705, 1119, 1398
MaeII	ACGT	2 cut(s)	299, 1392
MalI	GATC	7 cut(s)	506, 570, 609, 753, 795, 1224, 1569
MboI	GATC	7 cut(s)	504, 568, 607, 751, 793, 1222, 1567
MboII	GAAGA	8 cut(s)	101, 242, 249, 618, 630, 928, 937, 1094
MflI	RGATCY	1 cut(s)	568
MlyI	GAGTC	4 cut(s)	266, 641, 1211, 1472
MmeI	TCCRAC	1 cut(s)	413
MroXI	GAANNNNTTC	1 cut(s)	226
MseI	TTAA	5 cut(s)	83, 404, 933, 1107, 1428
MspR9I	CCNGG	1 cut(s)	725
MvaI	CCWGG	1 cut(s)	725
MvnI	CGCG	2 cut(s)	489, 1498
MwoI	GCNNNNNNNGC	2 cut(s)	1258, 1407
NcoI	CCATGG	1 cut(s)	1170
NdeII	GATC	7 cut(s)	504, 568, 607, 751, 793, 1222, 1567
NlaIV	GGNNCC	6 cut(s)	373, 374, 387, 570, 966, 1260
NmuCI	GTSAC	6 cut(s)	664, 839, 1190, 1214, 1303, 1378
NspI	RCATGY	2 cut(s)	525, 665
PagI	TCATGA	2 cut(s)	574, 1570
PciI	ACATGT	2 cut(s)	521, 661
PciSI	GCTCTTC	1 cut(s)	631
PdmI	GAANNNNTTC	1 cut(s)	226
PfeI	GAWTC	6 cut(s)	344, 612, 800, 997, 1153, 1501
PkrI	GCNGC	2 cut(s)	122, 213
PleI	GAGTC	4 cut(s)	266, 640, 1211, 1472
PpsI	GAGTC	4 cut(s)	266, 640, 1211, 1472
PpuMI	RGGWCCY	1 cut(s)	372
PscI	ACATGT	2 cut(s)	521, 661
PsiI	TTATAA	2 cut(s)	864, 1641
Psp1406I	AACGTT	1 cut(s)	1392
Psp5II	RGGWCCY	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	723
PspFI	CCCAGC	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	723
PspN4I	GGNNCC	6 cut(s)	373, 374, 387, 570, 966, 1260
PspPI	GGNCC	1 cut(s)	372
PspPPI	RGGWCCY	1 cut(s)	372
PstI	CTGCAG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	568
RsaI	GTAC	6 cut(s)	529, 543, 703, 743, 784, 1517
RsaNI	GTAC	6 cut(s)	528, 542, 702, 742, 783, 1516
SapI	GCTCTTC	1 cut(s)	631
SaqAI	TTAA	5 cut(s)	83, 404, 933, 1107, 1428
SatI	GCNGC	2 cut(s)	121, 212
Sau3AI	GATC	7 cut(s)	504, 568, 607, 751, 793, 1222, 1567
Sau96I	GGNCC	1 cut(s)	372
ScaI	AGTACT	2 cut(s)	703, 743
SchI	GAGTC	4 cut(s)	266, 641, 1211, 1472
ScrFI	CCNGG	1 cut(s)	725
SfaNI	GCATC	4 cut(s)	568, 569, 997, 1588
SfcI	CTRYAG	1 cut(s)	393
SinI	GGWCC	1 cut(s)	372
SmlI	CTYRAG	2 cut(s)	217, 1001
SmoI	CTYRAG	2 cut(s)	217, 1001
SpeI	ACTAGT	2 cut(s)	668, 704
SsiI	CCGC	2 cut(s)	616, 1498
SspMI	CTAG	5 cut(s)	377, 669, 705, 1119, 1398
StyD4I	CCNGG	1 cut(s)	723
StyI	CCWWGG	1 cut(s)	1170
TaaI	ACNGT	4 cut(s)	604, 701, 1309, 1448
TaiI	ACGT	2 cut(s)	302, 1395
TaqI	TCGA	5 cut(s)	610, 803, 995, 1508, 1630
TatI	WGTACW	4 cut(s)	527, 541, 701, 741
TfiI	GAWTC	6 cut(s)	344, 612, 800, 997, 1153, 1501
Tru1I	TTAA	5 cut(s)	83, 404, 933, 1107, 1428
Tru9I	TTAA	5 cut(s)	83, 404, 933, 1107, 1428
TscAI	CASTG	5 cut(s)	200, 514, 844, 1314, 1453
TseFI	GTSAC	6 cut(s)	664, 839, 1190, 1214, 1303, 1378
TseI	GCWGC	2 cut(s)	120, 211
Tsp45I	GTSAC	6 cut(s)	664, 839, 1190, 1214, 1303, 1378
TspDTI	ATGAA	5 cut(s)	91, 451, 785, 1095, 1482
TspRI	CASTG	5 cut(s)	200, 514, 844, 1314, 1453
VpaK11BI	GGWCC	1 cut(s)	372
XapI	RAATTY	2 cut(s)	583, 1164
XbaI	TCTAGA	1 cut(s)	1118
XceI	RCATGY	2 cut(s)	525, 665
XmnI	GAANNNNTTC	1 cut(s)	226
XspI	CTAG	5 cut(s)	377, 669, 705, 1119, 1398
ZraI	GACGTC	1 cut(s)	300
ZrmI	AGTACT	2 cut(s)	703, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.