FvH4_2g15470
BHLH Family

Transcription factor ABORTED

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
13612599 .. 13616357
3759 bp
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UTR
Exon/CDS
Intron
FvH4_2g15470.t1

Sequence Viewer

Length: 2025 bp
ATGGATCTATACCTTTGTTTTTTCTGCTGTGCTTTTGTTGCTTCTTCAATCCTCGTCTTGTTTTACTTGCTAATTTGTTCAGTACTACCCAAAATCTCGAAAGCAAGACAAACTGCTCATATCATCAGCTGCAAGCTAGGTGTCATGAACAATATCATCATGTCAAATCTCATACAGAGGCTTAGACCCCTTGTGGGTTTGAAAGGATGGGACTTTTGTGTTGTCTGGAAACTTAGTGAAGACCAGAGGTTTGTTGAATGGATGGATTGTTGCTGTTCTGGGACTGAAATGAGTACTCAAGATGGTGGATATGAAGACCATCTTCTTTTTCCAGTAGTTTCTGCAGTCCTTCCTTGTAGGGATACCTTGTTACAGCATCCAAGAACCACATCTTGTGATCTGCTTTCCAAAATGTCTTCTTCGGTTCCCCTAGACTCCGGGATCTATGCAGAGACTTTAATGTCCAATCAACCGAGTTGGTTAAACTTCTCTAATAGCACATTTTCGAGTACTAGTGCAGAAGAAGAAACTGTCGGGACCAGGGTTTTGATGCCAATACCAGGAGGACTAGTTGAGCTTCTTGTTGCCAAACAAGTACTTGAAGACCAGCATGTTATTGATTTCATCACGGAGCAATACAACTTCTCAGTAGAACAGAATCATATTGGTCCAAGCTTTGGGGTAAACTTAGACATTCATGATGGAATCCAATCGAAGCAAGTAATTTTAGACCACGAACAAATGGATCCCAGCAATCGTATTATCTGCTCTAGCGATAATTCTGCCATGAACTTCTTGCAGCAGTTTACTCACAACTTGGGAAACAGGATGAAGAACAGTAGTTATAATGTCAATTCTTTTGAAGATCCATCACATGAACAATTTCTTTCTGATAAGCAAATGGACCACTCACTTCATAATTGTTCGGCAAAAACTGTGTTTGATCAAGCAATGGAGGCAATGCAACAGTCCATTATGATGAGTGAGACACAAGCTACACACCACATGCATATGCAATTTATGGACCAGTCATTAGAACCAGACATGGATCATGAGCAGGACGCCGGAAATAATGATAAGAATTCAAATATTATAAATGATGATGGGGAACAAGCTACAGATTTGAACTCAGATTGCAGTGATCATGATCAGTTTGATGCTGAGGATGATGCAAAATATCGGAGGAGGACTGGAAAAGGGCAGGCCAAAAACCTTGTTGCAGAGAGAAAGAGAAGGAAGAAGCTTAATGACAGGCTTTATGAACTTAGGTCTTTAGTTCCCAATATCTCTAAGTTGGACAGAGCTTCTATTCTTGGGGATGCAATAGAGTATGTGATGGAGTTGCAGAACCAAGCTAAAAAACTCCAAGATGAGCTTGATGATGATCATGATCACGAAGAAGATCGCCATGTTCATGAAGGTGCTGCTAATAAGCAGTGTGGCATCACTTTCCAACATAACAGTATACAATCAGAGATTGATCAGAGTCAAAGTGGGGTTGACCTTAAAGCTGAGCAAAATGATCATCAAGCTCCAAATGGGTTCCATTTGGGAACAGCCGGAGATGGTAGTGTCTCAAAACAAAGCCCCGATTCAGAAGTTATCCACGATCACAAGACACAGCAGATGGAGCCTCAAGTGGAAGTAGCCCAAATAGATGGGAATCAGTTCTTTGTGAAAGTCTTCTGTGAGCACAAACCTGGTGGATTTGTGAGATTGATGGAGGCTTTGAGCTCTCTGAGCTTGGAAGTTACTAATGCCAATGTGACTAGCTTCAGATGCCTTGTCTCTAATGTTTTCATTGTAGAGAGAAAGGATAGTGGACTAGTTGAAGCTGATGAAGTGAGGGACTCTTTGCTAGAGCTAACAAAGAACCCATCAAAATGGCGCAGCGACGAAATGGTGAAAGCATCAGAAATTGGGATAGGCTTGGACAACAATCATCACCATCATCCCCATCACCAAAACCTCCACAACCACCATTTCAGCCCCTACCATTTACATCATCTTCCTACTGAAGCATAA

Protein Analysis

675

Amino Acids

76.15

Weight (kDa)

5.16

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 58 - 210 1.4e-20 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 406 - 449 2.1e-11 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 546 - 621 1.5e-11 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 846, 1094
AasI GACNNNNNNGTC 1 cut(s) 460
AccB7I CCANNNNNTGG 1 cut(s) 677
AccI GTMKAC 1 cut(s) 1465
AclWI GGATC 6 cut(s) 12, 449, 740, 753, 860, 1056
AcsI RAATTY 1 cut(s) 1081
AcuI CTGAAG 1 cut(s) 1759
AcyI GRCGYC 1 cut(s) 1062
AfaI GTAC 4 cut(s) 84, 295, 511, 597
AfiI CCNNNNNNNGG 3 cut(s) 194, 560, 677
AgsI TTSAA 8 cut(s) 48, 202, 257, 602, 863, 1086, 1126, 1832
AhlI ACTAGT 3 cut(s) 512, 568, 1825
AjnI CCWGG 3 cut(s) 539, 559, 1699
Alw21I GWGCWC 2 cut(s) 1695, 1736
Alw26I GTCTC 4 cut(s) 446, 980, 1579, 1792
AlwI GGATC 6 cut(s) 12, 449, 740, 753, 860, 1056
AoxI GGCC 1 cut(s) 1203
ApeKI GCWGC 4 cut(s) 129, 799, 1424, 1890
ApoI RAATTY 1 cut(s) 1081
ArsI GACNNNNNNTTYG 4 cut(s) 233, 265, 529, 561
Asp700I GAANNNNTTC 3 cut(s) 882, 1667, 1682
AspLEI GCGC 1 cut(s) 1890
AspS9I GGNCC 4 cut(s) 537, 668, 904, 1024
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 3 cut(s) 1915, 1937, 1952
AvaII GGWCC 4 cut(s) 537, 668, 904, 1024
BamHI GGATCC 1 cut(s) 745
BanII GRGCYC 1 cut(s) 1736
BbsI GAAGAC 5 cut(s) 246, 321, 408, 609, 1675
Bbv12I GWGCWC 2 cut(s) 1695, 1736
BbvCI CCTCAGC 1 cut(s) 1161
BbvI GCAGC 4 cut(s) 116, 811, 1411, 1902
BcgI CGANNNNNNTGC 2 cut(s) 764, 798
BciT130I CCWGG 3 cut(s) 541, 561, 1701
BciVI GTATCC 1 cut(s) 355
BclI TGATCA 7 cut(s) 943, 1141, 1147, 1384, 1390, 1480, 1522
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 4 cut(s) 446, 980, 1579, 1792
BcuI ACTAGT 3 cut(s) 512, 568, 1825
BfaI CTAG 8 cut(s) 137, 431, 513, 569, 771, 1770, 1826, 1859
BfmI CTRYAG 2 cut(s) 342, 1116
BfuI GTATCC 1 cut(s) 355
BisI GCNGC 4 cut(s) 130, 800, 1425, 1891
BlpI GCTNAGC 1 cut(s) 1512
BlsI GCNGC 4 cut(s) 131, 801, 1426, 1892
BmcAI AGTACT 4 cut(s) 84, 295, 511, 597
Bme1390I CCNGG 4 cut(s) 439, 541, 561, 1701
Bme18I GGWCC 4 cut(s) 537, 668, 904, 1024
BmgT120I GGNCC 4 cut(s) 537, 668, 904, 1024
BmiI GGNNCC 5 cut(s) 426, 538, 747, 1544, 1632
BmrFI CCNGG 4 cut(s) 439, 541, 561, 1701
BmsI GCATC 8 cut(s) 385, 540, 1147, 1159, 1309, 1452, 1769, 1919
BpiI GAAGAC 5 cut(s) 246, 321, 408, 609, 1675
Bpu10I CCTNAGC 1 cut(s) 1161
Bpu1102I GCTNAGC 1 cut(s) 1512
BpuEI CTTGAG 2 cut(s) 282, 1620
BpuMI CCSGG 1 cut(s) 439
BsaBI GATNNNNATC 4 cut(s) 1146, 1383, 1389, 1662
BsaHI GRCGYC 1 cut(s) 1062
BsaJI CCNNGG 1 cut(s) 540
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 560, 677
Bse1I ACTGG 3 cut(s) 332, 1027, 1195
Bse3DI GCAATG 2 cut(s) 957, 966
Bse8I GATNNNNATC 4 cut(s) 1146, 1383, 1389, 1662
BseBI CCWGG 3 cut(s) 541, 561, 1701
BseDI CCNNGG 1 cut(s) 540
BseGI GGATG 7 cut(s) 212, 267, 376, 834, 1171, 1324, 1951
BseJI GATNNNNATC 4 cut(s) 1146, 1383, 1389, 1662
BseLI CCNNNNNNNGG 3 cut(s) 194, 560, 677
BseMI GCAATG 2 cut(s) 957, 966
BseMII CTCAG 5 cut(s) 660, 1143, 1152, 1503, 1730
BseNI ACTGG 3 cut(s) 332, 1027, 1195
BseRI GAGGAG 1 cut(s) 1198
BseXI GCAGC 4 cut(s) 116, 811, 1411, 1902
BseYI CCCAGC 1 cut(s) 749
BsgI GTGCAG 1 cut(s) 537
BshFI GGCC 1 cut(s) 1205
BsiHKAI GWGCWC 2 cut(s) 1695, 1736
BsiSI CCGG 3 cut(s) 438, 1065, 1560
BslFI GGGAC 4 cut(s) 224, 295, 550, 1862
BslI CCNNNNNNNGG 3 cut(s) 194, 560, 677
BsmAI GTCTC 4 cut(s) 446, 980, 1579, 1792
BsmFI GGGAC 4 cut(s) 224, 295, 550, 1862
BsnI GGCC 1 cut(s) 1205
Bsp1286I GDGCHC 2 cut(s) 1695, 1736
Bsp1720I GCTNAGC 1 cut(s) 1512
BspANI GGCC 1 cut(s) 1205
BspCNI CTCAG 5 cut(s) 659, 1142, 1153, 1504, 1731
BspHI TCATGA 6 cut(s) 144, 697, 1051, 1144, 1387, 1414
BspLI GGNNCC 5 cut(s) 426, 538, 747, 1544, 1632
BspMAI CTGCAG 1 cut(s) 346
BspPI GGATC 6 cut(s) 12, 449, 740, 753, 860, 1056
BsrDI GCAATG 2 cut(s) 957, 966
BsrI ACTGG 3 cut(s) 332, 1027, 1195
BssECI CCNNGG 1 cut(s) 540
BssNAI GTATAC 1 cut(s) 1466
BssNI GRCGYC 1 cut(s) 1062
Bst1107I GTATAC 1 cut(s) 1466
Bst2UI CCWGG 3 cut(s) 541, 561, 1701
Bst4CI ACNGT 5 cut(s) 532, 839, 937, 969, 1463
BstACI GRCGYC 1 cut(s) 1062
BstC8I GCNNGC 2 cut(s) 134, 1203
BstF5I GGATG 7 cut(s) 212, 267, 376, 834, 1171, 1324, 1951
BstHHI GCGC 1 cut(s) 1890
BstMAI GTCTC 4 cut(s) 446, 980, 1579, 1792
BstMWI GCNNNNNNNGC 5 cut(s) 38, 956, 1630, 1740, 1779
BstNI CCWGG 3 cut(s) 541, 561, 1701
BstNSI RCATGY 2 cut(s) 614, 1009
BstSCI CCNGG 4 cut(s) 437, 539, 559, 1699
BstSFI CTRYAG 2 cut(s) 342, 1116
BstV1I GCAGC 4 cut(s) 116, 811, 1411, 1902
BstV2I GAAGAC 5 cut(s) 246, 321, 408, 609, 1675
BstX2I RGATCY 4 cut(s) 4, 441, 745, 865
BstXI CCANNNNNNTGG 2 cut(s) 1658, 1884
BstYI RGATCY 4 cut(s) 4, 441, 745, 865
BstZ17I GTATAC 1 cut(s) 1466
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 1 cut(s) 1205
BtsCI GGATG 7 cut(s) 212, 267, 376, 834, 1171, 1324, 1951
BtsI GCAGTG 2 cut(s) 1144, 1442
BtsIMutI CAGTG 2 cut(s) 1144, 1442
Cac8I GCNNGC 2 cut(s) 134, 1203
CciI TCATGA 6 cut(s) 144, 697, 1051, 1144, 1387, 1414
CfoI GCGC 1 cut(s) 1890
Cfr13I GGNCC 4 cut(s) 537, 668, 904, 1024
CseI GACGC 1 cut(s) 1070
CsiI ACCWGGT 1 cut(s) 1699
Csp6I GTAC 4 cut(s) 83, 294, 510, 596
CspCI CAANNNNNGTGG 2 cut(s) 1684, 1719
CviQI GTAC 4 cut(s) 83, 294, 510, 596
DrdI GACNNNNNNGTC 1 cut(s) 460
DseDI GACNNNNNNGTC 1 cut(s) 460
Ecl136II GAGCTC 1 cut(s) 1734
Eco24I GRGCYC 1 cut(s) 1736
Eco47I GGWCC 4 cut(s) 537, 668, 904, 1024
Eco53kI GAGCTC 1 cut(s) 1734
Eco57I CTGAAG 1 cut(s) 1759
EcoICRI GAGCTC 1 cut(s) 1734
EcoRI GAATTC 1 cut(s) 1081
EcoRII CCWGG 3 cut(s) 539, 559, 1699
EcoT22I ATGCAT 1 cut(s) 1011
EcoT38I GRGCYC 1 cut(s) 1736
FalI AAGNNNNNCTT 4 cut(s) 306, 338, 1359, 1391
FaqI GGGAC 4 cut(s) 224, 295, 550, 1862
FauNDI CATATG 1 cut(s) 1011
FbaI TGATCA 7 cut(s) 943, 1141, 1147, 1384, 1390, 1480, 1522
FblI GTMKAC 1 cut(s) 1465
Fnu4HI GCNGC 4 cut(s) 130, 800, 1425, 1891
FokI GGATG 7 cut(s) 219, 274, 363, 841, 1178, 1331, 1938
FriOI GRGCYC 1 cut(s) 1736
Fsp4HI GCNGC 4 cut(s) 130, 800, 1425, 1891
FspBI CTAG 8 cut(s) 137, 431, 513, 569, 771, 1770, 1826, 1859
GlaI GCGC 1 cut(s) 1889
GluI GCNGC 4 cut(s) 130, 800, 1425, 1891
GsaI CCCAGC 1 cut(s) 753
HaeIII GGCC 1 cut(s) 1205
HapII CCGG 3 cut(s) 438, 1065, 1560
HgaI GACGC 1 cut(s) 1070
HhaI GCGC 1 cut(s) 1890
Hin1I GRCGYC 1 cut(s) 1062
Hin6I GCGC 1 cut(s) 1888
HinP1I GCGC 1 cut(s) 1888
HincII GTYRAC 1 cut(s) 1501
HindII GTYRAC 1 cut(s) 1501
HindIII AAGCTT 2 cut(s) 673, 1241
HinfI GANTC 7 cut(s) 434, 658, 705, 1486, 1592, 1663, 1850
HpaII CCGG 3 cut(s) 438, 1065, 1560
HphI GGTGA 3 cut(s) 1915, 1937, 1952
Hpy166II GTNNAC 5 cut(s) 685, 807, 1466, 1501, 1823
Hpy188I TCNGA 9 cut(s) 892, 1132, 1182, 1474, 1485, 1597, 1740, 1778, 1915
Hpy8I GTNNAC 5 cut(s) 685, 807, 1466, 1501, 1823
Hpy99I CGWCG 1 cut(s) 1898
HpyAV CCTTC 3 cut(s) 359, 1227, 1412
HpyCH4III ACNGT 5 cut(s) 532, 839, 937, 969, 1463
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 956, 1630, 1740, 1779
Hsp92I GRCGYC 1 cut(s) 1062
HspAI GCGC 1 cut(s) 1888
Ksp22I TGATCA 7 cut(s) 943, 1141, 1147, 1384, 1390, 1480, 1522
LmnI GCTCC 3 cut(s) 631, 1537, 1630
Lsp1109I GCAGC 4 cut(s) 116, 811, 1411, 1902
LweI GCATC 8 cut(s) 385, 540, 1147, 1159, 1309, 1452, 1769, 1919
MabI ACCWGGT 1 cut(s) 1699
MaeI CTAG 8 cut(s) 137, 431, 513, 569, 771, 1770, 1826, 1859
MaeIII GTNAC 3 cut(s) 369, 1750, 1765
MflI RGATCY 4 cut(s) 4, 441, 745, 865
MhlI GDGCHC 2 cut(s) 1695, 1736
MluCI AATT 9 cut(s) 72, 723, 778, 853, 881, 919, 1016, 1081, 1917
MlyI GAGTC 3 cut(s) 428, 1495, 1844
MmeI TCCRAC 2 cut(s) 1275, 1477
Mph1103I ATGCAT 1 cut(s) 1011
MroXI GAANNNNTTC 3 cut(s) 882, 1667, 1682
MseI TTAA 4 cut(s) 458, 482, 1245, 1506
MslI CAYNNNNRTG 5 cut(s) 977, 1010, 1413, 1419, 1882
MspA1I CMGCKG 1 cut(s) 129
MspI CCGG 3 cut(s) 438, 1065, 1560
MspR9I CCNGG 4 cut(s) 439, 541, 561, 1701
MvaI CCWGG 3 cut(s) 541, 561, 1701
MwoI GCNNNNNNNGC 5 cut(s) 38, 956, 1630, 1740, 1779
NciI CCSGG 1 cut(s) 439
NdeI CATATG 1 cut(s) 1011
NlaIV GGNNCC 5 cut(s) 426, 538, 747, 1544, 1632
NmuCI GTSAC 1 cut(s) 1765
NsiI ATGCAT 1 cut(s) 1011
NspI RCATGY 2 cut(s) 614, 1009
PagI TCATGA 6 cut(s) 144, 697, 1051, 1144, 1387, 1414
PdmI GAANNNNTTC 3 cut(s) 882, 1667, 1682
PfeI GAWTC 4 cut(s) 658, 705, 1592, 1663
PflMI CCANNNNNTGG 1 cut(s) 677
PfoI TCCNGGA 1 cut(s) 437
PkrI GCNGC 4 cut(s) 131, 801, 1426, 1892
PleI GAGTC 3 cut(s) 428, 1494, 1844
PpsI GAGTC 3 cut(s) 428, 1494, 1844
PsiI TTATAA 2 cut(s) 846, 1094
Psp124BI GAGCTC 1 cut(s) 1736
Psp6I CCWGG 3 cut(s) 539, 559, 1699
PspFI CCCAGC 1 cut(s) 749
PspGI CCWGG 3 cut(s) 539, 559, 1699
PspN4I GGNNCC 5 cut(s) 426, 538, 747, 1544, 1632
PspPI GGNCC 4 cut(s) 537, 668, 904, 1024
PstI CTGCAG 1 cut(s) 346
PsuI RGATCY 4 cut(s) 4, 441, 745, 865
PvuII CAGCTG 1 cut(s) 129
RsaI GTAC 4 cut(s) 84, 295, 511, 597
RsaNI GTAC 4 cut(s) 83, 294, 510, 596
RseI CAYNNNNRTG 5 cut(s) 977, 1010, 1413, 1419, 1882
SacI GAGCTC 1 cut(s) 1736
SaqAI TTAA 4 cut(s) 458, 482, 1245, 1506
SatI GCNGC 4 cut(s) 130, 800, 1425, 1891
Sau96I GGNCC 4 cut(s) 537, 668, 904, 1024
ScaI AGTACT 4 cut(s) 84, 295, 511, 597
SchI GAGTC 3 cut(s) 428, 1495, 1844
ScrFI CCNGG 4 cut(s) 439, 541, 561, 1701
SduI GDGCHC 2 cut(s) 1695, 1736
SexAI ACCWGGT 1 cut(s) 1699
SfaNI GCATC 8 cut(s) 385, 540, 1147, 1159, 1309, 1452, 1769, 1919
SfcI CTRYAG 2 cut(s) 342, 1116
SinI GGWCC 4 cut(s) 537, 668, 904, 1024
SmiMI CAYNNNNRTG 5 cut(s) 977, 1010, 1413, 1419, 1882
SmlI CTYRAG 2 cut(s) 297, 1635
SmoI CTYRAG 2 cut(s) 297, 1635
SpeI ACTAGT 3 cut(s) 512, 568, 1825
Sse9I AATT 9 cut(s) 72, 723, 778, 853, 881, 919, 1016, 1081, 1917
SspI AATATT 1 cut(s) 1090
SspMI CTAG 8 cut(s) 137, 431, 513, 569, 771, 1770, 1826, 1859
SstI GAGCTC 1 cut(s) 1736
StyD4I CCNGG 4 cut(s) 437, 539, 559, 1699
TaaI ACNGT 5 cut(s) 532, 839, 937, 969, 1463
TaqI TCGA 3 cut(s) 98, 506, 713
TasI AATT 9 cut(s) 72, 723, 778, 853, 881, 919, 1016, 1081, 1917
TatI WGTACW 4 cut(s) 82, 293, 509, 595
TfiI GAWTC 4 cut(s) 658, 705, 1592, 1663
Tru1I TTAA 4 cut(s) 458, 482, 1245, 1506
Tru9I TTAA 4 cut(s) 458, 482, 1245, 1506
TscAI CASTG 2 cut(s) 1144, 1442
TseFI GTSAC 1 cut(s) 1765
TseI GCWGC 4 cut(s) 129, 799, 1424, 1890
Tsp45I GTSAC 1 cut(s) 1765
TspGWI ACGGA 1 cut(s) 644
TspRI CASTG 2 cut(s) 1144, 1442
Van91I CCANNNNNTGG 1 cut(s) 677
VpaK11BI GGWCC 4 cut(s) 537, 668, 904, 1024
XapI RAATTY 1 cut(s) 1081
XceI RCATGY 2 cut(s) 614, 1009
XmiI GTMKAC 1 cut(s) 1465
XmnI GAANNNNTTC 3 cut(s) 882, 1667, 1682
XspI CTAG 8 cut(s) 137, 431, 513, 569, 771, 1770, 1826, 1859
ZrmI AGTACT 4 cut(s) 84, 295, 511, 597
Zsp2I ATGCAT 1 cut(s) 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.