Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001641

Physical Location & Seq

Genomic Coordinates Forward (+)

15965682 .. 15967325

Gene Structure 1644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0117000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1644 bp

ATGAAGAAGCGCCCAACTCTACTCCATCTCATTGTTTCATTCCTCTTCATATCCACTTTTCTCTTCTCCCTGACCCACGCCGCCGGCGGCAAATGGGAGCTGCTTCTGAAAAGCGTCGGCATTTCCGCCATGCACATGCAGCTTCTCCACAACGACCGCGTCGTCATGTTCGACCGCACCAACTTCGGAAAATCCAACCTCTCCCTCCCCAACGGCGTCTGCCGCAACAACCCCAACGACACGGCGCTTAAAGTAGACTGCACGGCTCACTCGGCCGAGTACGACGTGGCGTCTAACCAAATTCGTCCCCTGTTCGTGTTCACAGACACGTGGTGCTCCTCGGGATCAGTAAACCCCAGCGGAAGTCTGGTCCAGACGGGAGGTTTCAACGACGGAGAGAGAAGGGTTAGGGTTTTTGATCCGTGTCCTACTTGTGACTGGAAAGAGATCGAGTTCGGGTTAGTCAACCGGAGATGGTACGCCACCAATCATATTCTGCCAGATGGAAAGCAGATAATCGTCGGCGGACGGCGGCAGTTCAACTACGAGTTTTACCCCAAAAGTGAAGGCACAATGAACGCTCACAGTTTGCCTTTTCTTGTCGAGACAAGTGACGGCAATGCCATAGAGAACAATCTCTACCCCTTTGTTTTTCTCAACGTTGACGGCAACCTTTTCATCTTCGCCAACAATAGAGCTATATTATTCGATTATGTTGCCGGTAAAATCGTGAAGACGTACCCAACAATACCCGGTGGAGACCCGAGGTCGTATCCGAGCACCGGTTCAGCGGTGATGTTACCTCTCATGAGTTCAAAAGGTCAGGCTGTGGCAGCTGAGGTTTTAGTCTGCGGTGGAGCTCCCAAAGGCTCTTATGTTAGTGCCCAAGGGGGGACTTTCGTGGAAGCATTGAAGACATGCGCTCGGATCAAAATAACCGACCCGAACCCGCAGTGGCTTGTGGAAGACATGCCTCTAGCTAGAGTCATGGGTGACATGACGTTACTTCCCAACGGTGACGTTTTAATTATCAACGGTACCGGACTAGGTGCCGCAGGGTGGGAGATCGGGCGGAACCCGGTACTCAACCCGGTTGTTTACAAGCCCGATAATGCGGTCGGGTCACGGTTCGAGCAACAAAACCCTAGTACCATACCACGGATGTACCACTCCACTGCAGTACTGCTACGTGATGGAAGGGTACTTGTTGGAGGTAGTAACCCTCATAATCGTTACGAGTTCTCAAACGTGCTTTTCCCAACCGAACTTGCCTTGGAGGCATTCTCTCCTAATTACTTGGACTCGCAATTCGCAAGTATACGTCCGAGCATCTTATCACCTCGGTCACAAGCTAAGGTTGGTTATGGAAAGAAGCTAGCCATTCAATTTTCGATAACGGGGAAAATAGCACTCAACTCGGTGTCTGTTACGATGGTGTCACCTTCATTTACTACGCATTCGTTCTCGATGAACCATAGGCTAGTGGTTCTTGCTTCCGAAAATGTTAGAGAACTTGGGAACTTGAAGTTTGAAGTTCAGGTTACGACTCCGGCTTCCGGTAATCTTGCACCTTCCGGATATTATCTTGTATATGTGATTCATCAGCAGATTCCAAGTGCGGGCATTTGGGTCAAAATTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

547

Amino Acids

59.98

Weight (kDa)

8.9

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxal_oxid_N	PF07250	44 - 432	7.6e-187	Glyoxal oxidase N-terminus
GO-like_E_set	PF09118	441 - 546	4.4e-26	Galactose oxidase-like, Early set domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16910
fragaria_vesca	FvH4_2g15460 FvH4_2g15460 FvH4_2g15470
malus_domestica	MD05G1122900.v1.1 MD05G1123000.v1.1 MD10G1125700.v1.1
prunus_persica	Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166800_v2.0.a1 Prupe.8G166900_v2.0.a1
pyrus_communis	pycom05g11720 pycom05g11750 pycom10g10820
rosa_chinensis	RchiOBHm_Chr6g0278441 RchiOBHm_Chr6g0278471
rosa_laevigata	RLG00000013226 RLG00000013228 RLG00000013381
rosa_multiflora	Rmu_sc0000258.1_g000003 Rmu_sc0000258.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229220 Rroxscaffold_7G00189870 Rroxscaffold_7G00189880 Rroxscaffold_7G00190350
rosa_rugosa	Rorug06G0006400 Rorug06G0117000 Rorug06G0117100.1
rosa_samantha	Rh1DG021000 Rh2DG345500 Rh2DG346800 Rh3AG263900 Rh3CG365900 Rh3DG372000 Rh5CG269300 Rh6AG226300 Rh6BG230500 Rh6CG233600 Rh6DG224900 Rh7AG412300 Rh7CG321300 Rh7DG336100
rosa_wichuraiana	Rw0G018390 Rw3G029150 Rw5G034840 Rw6G019740 Rw6G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc65I	GGTACC	1 cut(s)	1037
AccB1I	GGYRCC	2 cut(s)	1037, 1049
AccI	GTMKAC	2 cut(s)	255, 1318
AccII	CGCG	1 cut(s)	159
AccIII	TCCGGA	1 cut(s)	1574
AclI	AACGTT	1 cut(s)	660
AclWI	GGATC	3 cut(s)	352, 413, 935
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	2 cut(s)	300, 1635
AcvI	CACGTG	1 cut(s)	330
AcyI	GRCGYC	2 cut(s)	216, 290
AdeI	CACNNNGTG	1 cut(s)	333
AfaI	GTAC	9 cut(s)	281, 479, 740, 1039, 1083, 1150, 1166, 1182, 1203
AfiI	CCNNNNNNNGG	6 cut(s)	782, 891, 1059, 1158, 1556, 1619
AflIII	ACRYGT	1 cut(s)	327
AgeI	ACCGGT	1 cut(s)	782
AgsI	TTSAA	7 cut(s)	388, 541, 816, 913, 1385, 1525, 1532
AhdI	GACNNNNNGTC	2 cut(s)	289, 766
AjiI	CACGTC	1 cut(s)	286
AluBI	AGCT	8 cut(s)	100, 142, 698, 836, 860, 980, 1352, 1375
AluI	AGCT	8 cut(s)	100, 142, 698, 836, 860, 980, 1352, 1375
Alw21I	GWGCWC	3 cut(s)	338, 782, 862
Alw26I	GTCTC	2 cut(s)	599, 753
AlwI	GGATC	3 cut(s)	352, 413, 935
Ama87I	CYCGRG	2 cut(s)	340, 763
Aor13HI	TCCGGA	1 cut(s)	1574
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	3 cut(s)	100, 139, 833
ApoI	RAATTY	2 cut(s)	300, 1635
ArsI	GACNNNNNNTTYG	2 cut(s)	1292, 1324
AsiGI	ACCGGT	1 cut(s)	782
Asp718I	GGTACC	1 cut(s)	1037
AspLEI	GCGC	3 cut(s)	12, 247, 923
AspS9I	GGNCC	1 cut(s)	370
AsuC2I	CCSGG	3 cut(s)	753, 1079, 1091
AsuHPI	GGTGA	5 cut(s)	805, 1004, 1028, 1329, 1431
AsuNHI	GCTAGC	1 cut(s)	1375
AvaI	CYCGRG	2 cut(s)	340, 763
AvaII	GGWCC	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	886
BaeI	ACNNNNGTAYC	4 cut(s)	1132, 1148, 1165, 1181
BanI	GGYRCC	2 cut(s)	1037, 1049
BanII	GRGCYC	1 cut(s)	862
BbrPI	CACGTG	1 cut(s)	330
BbsI	GAAGAC	3 cut(s)	740, 920, 972
Bbv12I	GWGCWC	3 cut(s)	338, 782, 862
BbvCI	CCTCAGC	1 cut(s)	837
BbvI	GCAGC	3 cut(s)	87, 151, 845
BccI	CCATC	5 cut(s)	33, 468, 497, 1187, 1426
BceAI	ACGGC	6 cut(s)	229, 258, 279, 545, 631, 682
BcgI	CGANNNNNNTGC	6 cut(s)	166, 200, 698, 732, 1398, 1432
BciVI	GTATCC	1 cut(s)	783
BcnI	CCSGG	3 cut(s)	753, 1079, 1091
BcoDI	GTCTC	2 cut(s)	599, 753
BfaI	CTAG	6 cut(s)	977, 981, 1046, 1146, 1376, 1481
BfmI	CTRYAG	1 cut(s)	1176
BfoI	RGCGCY	2 cut(s)	13, 248
BfuI	GTATCC	1 cut(s)	783
BglI	GCCNNNNNGGC	1 cut(s)	1277
BisI	GCNGC	8 cut(s)	81, 88, 101, 140, 223, 533, 834, 1053
BlsI	GCNGC	8 cut(s)	82, 89, 102, 141, 224, 534, 835, 1054
BmcAI	AGTACT	1 cut(s)	1182
Bme1390I	CCNGG	3 cut(s)	753, 1079, 1091
Bme18I	GGWCC	1 cut(s)	370
BmeRI	GACNNNNNGTC	2 cut(s)	289, 766
BmeT110I	CYCGRG	2 cut(s)	340, 763
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	3 cut(s)	1039, 1051, 1076
BmrFI	CCNGG	3 cut(s)	753, 1079, 1091
BmsI	GCATC	1 cut(s)	1338
BmtI	GCTAGC	1 cut(s)	1379
BpiI	GAAGAC	3 cut(s)	740, 920, 972
BplI	GAGNNNNNCTC	2 cut(s)	1268, 1300
Bpu10I	CCTNAGC	2 cut(s)	837, 1353
BpuMI	CCSGG	3 cut(s)	753, 1079, 1091
BsaAI	YACGTR	2 cut(s)	330, 1190
BsaHI	GRCGYC	2 cut(s)	216, 290
BsaI	GGTCTC	1 cut(s)	753
BsaJI	CCNNGG	6 cut(s)	339, 764, 886, 1157, 1272, 1340
BsaWI	WCCGGW	5 cut(s)	468, 782, 1040, 1556, 1574
Bsc4I	CCNNNNNNNGG	6 cut(s)	782, 891, 1059, 1158, 1556, 1619
Bse118I	RCCGGY	3 cut(s)	83, 719, 782
Bse1I	ACTGG	1 cut(s)	443
Bse3DI	GCAATG	1 cut(s)	625
BseAI	TCCGGA	1 cut(s)	1574
BseDI	CCNNGG	6 cut(s)	339, 764, 886, 1157, 1272, 1340
BseGI	GGATG	1 cut(s)	1167
BseLI	CCNNNNNNNGG	6 cut(s)	782, 891, 1059, 1158, 1556, 1619
BseMI	GCAATG	1 cut(s)	625
BseMII	CTCAG	1 cut(s)	828
BseNI	ACTGG	1 cut(s)	443
BseRI	GAGGAG	1 cut(s)	328
BseSI	GKGCMC	1 cut(s)	886
BseX3I	CGGCCG	1 cut(s)	273
BseXI	GCAGC	3 cut(s)	87, 151, 845
BseYI	CCCAGC	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	244
Bsh1236I	CGCG	1 cut(s)	159
Bsh1285I	CGRYCG	4 cut(s)	157, 175, 276, 1119
BshFI	GGCC	1 cut(s)	275
BshNI	GGYRCC	2 cut(s)	1037, 1049
BshTI	ACCGGT	1 cut(s)	782
BsiEI	CGRYCG	4 cut(s)	157, 175, 276, 1119
BsiHKAI	GWGCWC	3 cut(s)	338, 782, 862
BsiHKCI	CYCGRG	2 cut(s)	340, 763
BslFI	GGGAC	2 cut(s)	291, 907
BslI	CCNNNNNNNGG	6 cut(s)	782, 891, 1059, 1158, 1556, 1619
BsmAI	GTCTC	2 cut(s)	599, 753
BsmFI	GGGAC	2 cut(s)	291, 907
BsmI	GAATGC	2 cut(s)	1280, 1456
BsnI	GGCC	1 cut(s)	275
Bso31I	GGTCTC	1 cut(s)	753
BsoBI	CYCGRG	2 cut(s)	340, 763
Bsp1286I	GDGCHC	4 cut(s)	338, 782, 862, 886
Bsp13I	TCCGGA	1 cut(s)	1574
Bsp143I	GATC	5 cut(s)	344, 418, 447, 927, 1065
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	1 cut(s)	829
BspEI	TCCGGA	1 cut(s)	1574
BspFNI	CGCG	1 cut(s)	159
BspHI	TCATGA	1 cut(s)	807
BspLI	GGNNCC	3 cut(s)	1039, 1051, 1076
BspMAI	CTGCAG	1 cut(s)	1180
BspOI	GCTAGC	1 cut(s)	1379
BspPI	GGATC	3 cut(s)	352, 413, 935
BspT107I	GGYRCC	2 cut(s)	1037, 1049
BspTNI	GGTCTC	1 cut(s)	753
BsrDI	GCAATG	1 cut(s)	625
BsrFI	RCCGGY	3 cut(s)	83, 719, 782
BsrI	ACTGG	1 cut(s)	443
BssAI	RCCGGY	3 cut(s)	83, 719, 782
BssECI	CCNNGG	6 cut(s)	339, 764, 886, 1157, 1272, 1340
BssMI	GATC	5 cut(s)	344, 418, 447, 927, 1065
BssNAI	GTATAC	1 cut(s)	1319
BssNI	GRCGYC	2 cut(s)	216, 290
BssT1I	CCWWGG	2 cut(s)	886, 1272
Bst1107I	GTATAC	1 cut(s)	1319
Bst4CI	ACNGT	4 cut(s)	587, 1016, 1037, 1128
Bst6I	CTCTTC	2 cut(s)	50, 68
BstACI	GRCGYC	2 cut(s)	216, 290
BstBAI	YACGTR	2 cut(s)	330, 1190
BstC8I	GCNNGC	3 cut(s)	85, 1377, 1621
BstDEI	CTNAG	2 cut(s)	837, 1353
BstDSI	CCRYGG	1 cut(s)	1157
BstF5I	GGATG	1 cut(s)	1167
BstFNI	CGCG	1 cut(s)	159
BstH2I	RGCGCY	2 cut(s)	13, 248
BstHHI	GCGC	3 cut(s)	12, 247, 923
BstKTI	GATC	5 cut(s)	347, 421, 450, 930, 1068
BstMAI	GTCTC	2 cut(s)	599, 753
BstMBI	GATC	5 cut(s)	344, 418, 447, 927, 1065
BstMCI	CGRYCG	4 cut(s)	157, 175, 276, 1119
BstMWI	GCNNNNNNNGC	5 cut(s)	139, 222, 272, 833, 1277
BstNSI	RCATGY	3 cut(s)	139, 921, 973
BstSCI	CCNGG	3 cut(s)	751, 1077, 1089
BstSFI	CTRYAG	1 cut(s)	1176
BstSLI	GKGCMC	1 cut(s)	886
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	3 cut(s)	87, 151, 845
BstV2I	GAAGAC	3 cut(s)	740, 920, 972
BstZ17I	GTATAC	1 cut(s)	1319
BstZI	CGGCCG	1 cut(s)	273
BsuI	GTATCC	1 cut(s)	783
BsuRI	GGCC	1 cut(s)	275
BtgI	CCRYGG	1 cut(s)	1157
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	1167
BtsI	GCAGTG	2 cut(s)	959, 1173
BtsIMutI	CAGTG	2 cut(s)	959, 1173
Cac8I	GCNNGC	3 cut(s)	85, 1377, 1621
CciI	TCATGA	1 cut(s)	807
CfoI	GCGC	3 cut(s)	12, 247, 923
Cfr10I	RCCGGY	3 cut(s)	83, 719, 782
Cfr13I	GGNCC	1 cut(s)	370
CseI	GACGC	4 cut(s)	103, 148, 205, 279
Csp6I	GTAC	9 cut(s)	280, 478, 739, 1038, 1082, 1149, 1165, 1181, 1202
CspAI	ACCGGT	1 cut(s)	782
CviAII	CATG	8 cut(s)	130, 136, 166, 808, 918, 970, 988, 997
CviQI	GTAC	9 cut(s)	280, 478, 739, 1038, 1082, 1149, 1165, 1181, 1202
DdeI	CTNAG	2 cut(s)	837, 1353
DpnI	GATC	5 cut(s)	346, 420, 449, 929, 1067
DpnII	GATC	5 cut(s)	344, 418, 447, 927, 1065
DraIII	CACNNNGTG	1 cut(s)	333
DrdI	GACNNNNNNGTC	1 cut(s)	161
DriI	GACNNNNNGTC	2 cut(s)	289, 766
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	273
EagI	CGGCCG	1 cut(s)	273
Eam1104I	CTCTTC	2 cut(s)	50, 68
Eam1105I	GACNNNNNGTC	2 cut(s)	289, 766
EarI	CTCTTC	2 cut(s)	50, 68
EciI	GGCGGA	3 cut(s)	115, 540, 1087
Ecl136II	GAGCTC	1 cut(s)	860
EclXI	CGGCCG	1 cut(s)	273
Eco130I	CCWWGG	2 cut(s)	886, 1272
Eco24I	GRGCYC	1 cut(s)	862
Eco31I	GGTCTC	1 cut(s)	753
Eco47I	GGWCC	1 cut(s)	370
Eco52I	CGGCCG	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	860
Eco72I	CACGTG	1 cut(s)	330
Eco88I	CYCGRG	2 cut(s)	340, 763
EcoICRI	GAGCTC	1 cut(s)	860
EcoT14I	CCWWGG	2 cut(s)	886, 1272
EcoT38I	GRGCYC	1 cut(s)	862
ErhI	CCWWGG	2 cut(s)	886, 1272
FaeI	CATG	8 cut(s)	133, 139, 169, 811, 921, 973, 991, 1000
FaqI	GGGAC	2 cut(s)	291, 907
FatI	CATG	8 cut(s)	129, 135, 165, 807, 917, 969, 987, 996
FauI	CCCGC	2 cut(s)	957, 1612
FblI	GTMKAC	2 cut(s)	255, 1318
Fnu4HI	GCNGC	8 cut(s)	81, 88, 101, 140, 223, 533, 834, 1053
FokI	GGATG	1 cut(s)	1174
FriOI	GRGCYC	1 cut(s)	862
Fsp4HI	GCNGC	8 cut(s)	81, 88, 101, 140, 223, 533, 834, 1053
FspBI	CTAG	6 cut(s)	977, 981, 1046, 1146, 1376, 1481
GlaI	GCGC	3 cut(s)	11, 246, 922
GluI	GCNGC	8 cut(s)	81, 88, 101, 140, 223, 533, 834, 1053
GsaI	CCCAGC	1 cut(s)	360
HaeII	RGCGCY	2 cut(s)	13, 248
HaeIII	GGCC	1 cut(s)	275
HgaI	GACGC	4 cut(s)	103, 148, 205, 279
HhaI	GCGC	3 cut(s)	12, 247, 923
Hin1I	GRCGYC	2 cut(s)	216, 290
Hin1II	CATG	8 cut(s)	133, 139, 169, 811, 921, 973, 991, 1000
Hin6I	GCGC	3 cut(s)	10, 245, 921
HinP1I	GCGC	3 cut(s)	10, 245, 921
HincII	GTYRAC	2 cut(s)	466, 664
HindII	GTYRAC	2 cut(s)	466, 664
HinfI	GANTC	5 cut(s)	984, 1301, 1546, 1597, 1609
HphI	GGTGA	5 cut(s)	805, 1004, 1028, 1329, 1431
Hpy166II	GTNNAC	7 cut(s)	256, 321, 352, 466, 664, 1099, 1319
Hpy188I	TCNGA	6 cut(s)	108, 188, 777, 927, 1326, 1498
Hpy188III	TCNNGA	7 cut(s)	342, 373, 604, 730, 808, 1465, 1575
Hpy8I	GTNNAC	7 cut(s)	256, 321, 352, 466, 664, 1099, 1319
Hpy99I	CGWCG	5 cut(s)	119, 164, 287, 395, 524
HpyAV	CCTTC	5 cut(s)	396, 560, 1191, 1452, 1581
HpyCH4III	ACNGT	4 cut(s)	587, 1016, 1037, 1128
HpyCH4IV	ACGT	9 cut(s)	285, 329, 660, 737, 1001, 1020, 1189, 1248, 1321
HpyCH4V	TGCA	5 cut(s)	133, 139, 261, 1178, 1568
HpyF10VI	GCNNNNNNNGC	5 cut(s)	139, 222, 272, 833, 1277
HpyF3I	CTNAG	2 cut(s)	837, 1353
HpySE526I	ACGT	9 cut(s)	285, 329, 660, 737, 1001, 1020, 1189, 1248, 1321
Hsp92I	GRCGYC	2 cut(s)	216, 290
Hsp92II	CATG	8 cut(s)	133, 139, 169, 811, 921, 973, 991, 1000
HspAI	GCGC	3 cut(s)	10, 245, 921
Kpn2I	TCCGGA	1 cut(s)	1574
KpnI	GGTACC	1 cut(s)	1041
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Kzo9I	GATC	5 cut(s)	344, 418, 447, 927, 1065
LmnI	GCTCC	4 cut(s)	97, 341, 857, 865
Lsp1109I	GCAGC	3 cut(s)	87, 151, 845
LweI	GCATC	1 cut(s)	1338
MaeI	CTAG	6 cut(s)	977, 981, 1046, 1146, 1376, 1481
MaeII	ACGT	9 cut(s)	285, 329, 660, 737, 1001, 1020, 1189, 1248, 1321
MalI	GATC	5 cut(s)	346, 420, 449, 929, 1067
MboI	GATC	5 cut(s)	344, 418, 447, 927, 1065
MboII	GAAGA	7 cut(s)	16, 37, 55, 673, 745, 925, 977
MhlI	GDGCHC	4 cut(s)	338, 782, 862, 886
MluCI	AATT	6 cut(s)	300, 1026, 1291, 1307, 1385, 1635
MlyI	GAGTC	3 cut(s)	993, 1295, 1540
MmeI	TCCRAC	2 cut(s)	219, 1189
MreI	CGCCGGCG	1 cut(s)	83
MroI	TCCGGA	1 cut(s)	1574
MroNI	GCCGGC	1 cut(s)	83
MseI	TTAA	2 cut(s)	249, 1025
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	3 cut(s)	360, 791, 836
MspR9I	CCNGG	3 cut(s)	753, 1079, 1091
Mva1269I	GAATGC	2 cut(s)	1280, 1456
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	5 cut(s)	139, 222, 272, 833, 1277
NaeI	GCCGGC	1 cut(s)	85
NciI	CCSGG	3 cut(s)	753, 1079, 1091
NdeII	GATC	5 cut(s)	344, 418, 447, 927, 1065
NgoMIV	GCCGGC	1 cut(s)	83
NheI	GCTAGC	1 cut(s)	1375
NlaIII	CATG	8 cut(s)	133, 139, 169, 811, 921, 973, 991, 1000
NlaIV	GGNNCC	3 cut(s)	1039, 1051, 1076
NmeAIII	GCCGAG	2 cut(s)	251, 301
NmuCI	GTSAC	7 cut(s)	434, 611, 992, 1016, 1122, 1344, 1437
NspI	RCATGY	3 cut(s)	139, 921, 973
PagI	TCATGA	1 cut(s)	807
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 168
PctI	GAATGC	2 cut(s)	1280, 1456
PdiI	GCCGGC	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	1597, 1609
PflFI	GACNNNGTC	1 cut(s)	158
PinAI	ACCGGT	1 cut(s)	782
PkrI	GCNGC	8 cut(s)	82, 89, 102, 141, 224, 534, 835, 1054
PleI	GAGTC	3 cut(s)	992, 1295, 1540
PmaCI	CACGTG	1 cut(s)	330
PmlI	CACGTG	1 cut(s)	330
PpsI	GAGTC	3 cut(s)	992, 1295, 1540
Ppu21I	YACGTR	2 cut(s)	330, 1190
Psp124BI	GAGCTC	1 cut(s)	862
Psp1406I	AACGTT	1 cut(s)	660
PspCI	CACGTG	1 cut(s)	330
PspFI	CCCAGC	1 cut(s)	356
PspN4I	GGNNCC	3 cut(s)	1039, 1051, 1076
PspPI	GGNCC	1 cut(s)	370
PsrI	GAACNNNNNNTAC	2 cut(s)	623, 655
PstI	CTGCAG	1 cut(s)	1180
PsyI	GACNNNGTC	1 cut(s)	158
PvuII	CAGCTG	1 cut(s)	836
RsaI	GTAC	9 cut(s)	281, 479, 740, 1039, 1083, 1150, 1166, 1182, 1203
RsaNI	GTAC	9 cut(s)	280, 478, 739, 1038, 1082, 1149, 1165, 1181, 1202
RseI	CAYNNNNRTG	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	862
SaqAI	TTAA	2 cut(s)	249, 1025
SatI	GCNGC	8 cut(s)	81, 88, 101, 140, 223, 533, 834, 1053
Sau3AI	GATC	5 cut(s)	344, 418, 447, 927, 1065
Sau96I	GGNCC	1 cut(s)	370
ScaI	AGTACT	1 cut(s)	1182
SchI	GAGTC	3 cut(s)	993, 1295, 1540
ScrFI	CCNGG	3 cut(s)	753, 1079, 1091
SduI	GDGCHC	4 cut(s)	338, 782, 862, 886
SfaNI	GCATC	1 cut(s)	1338
SfcI	CTRYAG	1 cut(s)	1176
SgrAI	CRCCGGYG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	6 cut(s)	300, 1026, 1291, 1307, 1385, 1635
SspMI	CTAG	6 cut(s)	977, 981, 1046, 1146, 1376, 1481
SstI	GAGCTC	1 cut(s)	862
StyD4I	CCNGG	3 cut(s)	751, 1077, 1089
StyI	CCWWGG	2 cut(s)	886, 1272
TaaI	ACNGT	4 cut(s)	587, 1016, 1037, 1128
TaiI	ACGT	9 cut(s)	288, 332, 663, 740, 1004, 1023, 1192, 1251, 1324
TaqI	TCGA	7 cut(s)	171, 450, 603, 708, 1131, 1391, 1466
TaqII	GACCGA	1 cut(s)	1332
TasI	AATT	6 cut(s)	300, 1026, 1291, 1307, 1385, 1635
TatI	WGTACW	1 cut(s)	1180
TauI	GCSGC	5 cut(s)	83, 90, 225, 535, 1055
TfiI	GAWTC	2 cut(s)	1597, 1609
Tru1I	TTAA	2 cut(s)	249, 1025
Tru9I	TTAA	2 cut(s)	249, 1025
TscAI	CASTG	2 cut(s)	959, 1180
TseFI	GTSAC	7 cut(s)	434, 611, 992, 1016, 1122, 1344, 1437
TseI	GCWGC	3 cut(s)	100, 139, 833
Tsp45I	GTSAC	7 cut(s)	434, 611, 992, 1016, 1122, 1344, 1437
TspDTI	ATGAA	8 cut(s)	17, 27, 37, 590, 667, 1434, 1484, 1589
TspGWI	ACGGA	3 cut(s)	408, 411, 1174
TspRI	CASTG	2 cut(s)	959, 1180
Tth111I	GACNNNGTC	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	2 cut(s)	300, 1635
XceI	RCATGY	3 cut(s)	139, 921, 973
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XmiI	GTMKAC	2 cut(s)	255, 1318
XspI	CTAG	6 cut(s)	977, 981, 1046, 1146, 1376, 1481
ZrmI	AGTACT	1 cut(s)	1182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.