Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Forward (+)

7988165 .. 7989525

Gene Structure 1361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGACTGTTAAGCATAATCCGGAAGATCAAGAAGAAAGAGAAGGAGATGCGTATTCTTATGGTTGGACTTGATAATTCTGGGAAGACGACGATTGTTCTGAAAATAAACGGAGAAGACACAAGTGTGATTAGTCCAACTCTTGGATTCAACATCAAAACCATTATCTACCAAAAGTATACGCTAAATATATGGGATGTTGGTGGGCAAAAGACTATAAGATCGTATTGGAGGAATTACTTTGAGCAGACTGATGGTTTGGTTTGGGTGGTTGATAGTTCTGATCTTAGGAGGTTAGATGATTGCAAGATGGAACTTGACAATCTCTTGAAAGAAGAGAGGCTAGCTGGTTCATCTTTGCTGATACTAGCAAATAAGCAGGATATTCAAGGTGCACTAACACCTGATGAAATTGGCAAGGTGCTAAACTTAGAGTCCATGGATAAAAGCCGGCACTGGAAGATAGTGGGTTGCAGCGCATACACGGGTGAAGGTTTGTTGGAAGGATTCGATTGGTTGGTTCAAGACATTGCCTCCAGGATTTACATGCTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

185

Amino Acids

21.08

Weight (kDa)

5.95

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	4 - 177	5.7e-69	ADP-ribosylation factor family
SRPRB	PF09439	16 - 145	3.1e-08	Signal recognition particle receptor beta subunit
Roc	PF08477	18 - 128	2.2e-11	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	18 - 177	8.7e-11	Ras family
Gtr1_RagA	PF04670	18 - 111	8.6e-08	Gtr1/RagA G protein conserved region
MMR_HSR1	PF01926	18 - 126	6.7e-06	50S ribosome-binding GTPase
G-alpha	PF00503	45 - 116	2.3e-06	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	179
AccIII	TCCGGA	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	4 cut(s)	151, 331, 389, 524
AjnI	CCWGG	1 cut(s)	536
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
Alw21I	GWGCWC	1 cut(s)	397
Alw44I	GTGCAC	1 cut(s)	393
Aor13HI	TCCGGA	1 cut(s)	21
ApaLI	GTGCAC	1 cut(s)	393
ApeKI	GCWGC	1 cut(s)	474
ArsI	GACNNNNNNTTYG	2 cut(s)	241, 273
AspLEI	GCGC	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	500
AsuNHI	GCTAGC	1 cut(s)	343
BaeGI	GKGCMC	1 cut(s)	397
BbsI	GAAGAC	2 cut(s)	92, 123
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	1 cut(s)	486
BccI	CCATC	2 cut(s)	248, 304
BciT130I	CCWGG	1 cut(s)	538
BfaI	CTAG	2 cut(s)	344, 368
BisI	GCNGC	1 cut(s)	475
BlsI	GCNGC	1 cut(s)	476
Bme1390I	CCNGG	1 cut(s)	538
BmrFI	CCNGG	1 cut(s)	538
BmsI	GCATC	1 cut(s)	39
BmtI	GCTAGC	1 cut(s)	347
BpiI	GAAGAC	2 cut(s)	92, 123
BpmI	CTGGAG	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	438
BsaWI	WCCGGW	1 cut(s)	21
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse118I	RCCGGY	1 cut(s)	450
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	528
BseAI	TCCGGA	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	538
BseDI	CCNNGG	1 cut(s)	438
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	528
BseNI	ACTGG	1 cut(s)	461
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	1 cut(s)	486
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	2 cut(s)	22, 451
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp13I	TCCGGA	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	27, 221, 283
Bsp19I	CCATGG	1 cut(s)	438
BspEI	TCCGGA	1 cut(s)	21
BspOI	GCTAGC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	528
BsrFI	RCCGGY	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	438
BssMI	GATC	3 cut(s)	27, 221, 283
BssNAI	GTATAC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	438
Bst1107I	GTATAC	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	538
Bst4CI	ACNGT	1 cut(s)	9
Bst6I	CTCTTC	1 cut(s)	330
BstC8I	GCNNGC	2 cut(s)	345, 452
BstDEI	CTNAG	2 cut(s)	287, 430
BstDSI	CCRYGG	1 cut(s)	438
BstF5I	GGATG	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	3 cut(s)	30, 224, 286
BstMBI	GATC	3 cut(s)	27, 221, 283
BstNI	CCWGG	1 cut(s)	538
BstNSI	RCATGY	1 cut(s)	550
BstSCI	CCNGG	1 cut(s)	536
BstSLI	GKGCMC	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	486
BstV2I	GAAGAC	2 cut(s)	92, 123
BstZ17I	GTATAC	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	438
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	454
Cac8I	GCNNGC	2 cut(s)	345, 452
CfoI	GCGC	1 cut(s)	479
Cfr10I	RCCGGY	1 cut(s)	450
CviAII	CATG	2 cut(s)	439, 547
CviJI	RGCY	3 cut(s)	343, 347, 450
CviKI_1	RGCY	3 cut(s)	343, 347, 450
DdeI	CTNAG	2 cut(s)	287, 430
DpnI	GATC	3 cut(s)	29, 223, 285
DpnII	GATC	3 cut(s)	27, 221, 283
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	536
EcoT14I	CCWWGG	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	2 cut(s)	442, 550
FaiI	YATR	9 cut(s)	17, 62, 180, 191, 193, 218, 440, 481, 548
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	2 cut(s)	438, 546
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	1 cut(s)	475
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	475
FspBI	CTAG	2 cut(s)	344, 368
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	1 cut(s)	475
GsuI	CTGGAG	1 cut(s)	520
HapII	CCGG	2 cut(s)	22, 451
HhaI	GCGC	1 cut(s)	479
Hin1II	CATG	2 cut(s)	442, 550
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HinfI	GANTC	3 cut(s)	147, 434, 507
HpaII	CCGG	2 cut(s)	22, 451
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	2 cut(s)	180, 395
Hpy188I	TCNGA	2 cut(s)	102, 283
Hpy188III	TCNNGA	4 cut(s)	22, 31, 328, 524
Hpy8I	GTNNAC	2 cut(s)	180, 395
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	3 cut(s)	37, 485, 497
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4V	TGCA	3 cut(s)	306, 395, 474
HpyF3I	CTNAG	2 cut(s)	287, 430
Hsp92II	CATG	2 cut(s)	442, 550
HspAI	GCGC	1 cut(s)	477
Kpn2I	TCCGGA	1 cut(s)	21
KroI	GCCGGC	1 cut(s)	450
KroNI	GCCGGC	1 cut(s)	452
Kzo9I	GATC	3 cut(s)	27, 221, 283
LpnPI	CCDG	9 cut(s)	35, 66, 333, 365, 417, 442, 464, 523, 550
Lsp1109I	GCAGC	1 cut(s)	486
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	2 cut(s)	344, 368
MalI	GATC	3 cut(s)	29, 223, 285
MboI	GATC	3 cut(s)	27, 221, 283
MboII	GAAGA	6 cut(s)	37, 46, 97, 128, 347, 472
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	3 cut(s)	76, 235, 411
MlyI	GAGTC	1 cut(s)	443
MmeI	TCCRAC	3 cut(s)	46, 161, 480
MnlI	CCTC	4 cut(s)	225, 285, 333, 544
MroI	TCCGGA	1 cut(s)	21
MroNI	GCCGGC	1 cut(s)	450
MseI	TTAA	1 cut(s)	11
MslI	CAYNNNNRTG	1 cut(s)	125
MspI	CCGG	2 cut(s)	22, 451
MspR9I	CCNGG	1 cut(s)	538
MvaI	CCWGG	1 cut(s)	538
NaeI	GCCGGC	1 cut(s)	452
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	3 cut(s)	27, 221, 283
NgoMIV	GCCGGC	1 cut(s)	450
NheI	GCTAGC	1 cut(s)	343
NlaIII	CATG	2 cut(s)	442, 550
NspI	RCATGY	1 cut(s)	550
OliI	CACNNNNGTG	1 cut(s)	125
PdiI	GCCGGC	1 cut(s)	452
PfeI	GAWTC	2 cut(s)	147, 507
PflMI	CCANNNNNTGG	1 cut(s)	143
PfoI	TCCNGGA	1 cut(s)	536
PkrI	GCNGC	1 cut(s)	476
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	536
PspGI	CCWGG	1 cut(s)	536
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	1 cut(s)	475
Sau3AI	GATC	3 cut(s)	27, 221, 283
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	1 cut(s)	538
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	6 cut(s)	296, 349, 394, 406, 423, 496
SfaNI	GCATC	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	3 cut(s)	76, 235, 411
SspMI	CTAG	2 cut(s)	344, 368
StyD4I	CCNGG	1 cut(s)	536
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	9
TaqI	TCGA	1 cut(s)	510
TasI	AATT	3 cut(s)	76, 235, 411
TfiI	GAWTC	2 cut(s)	147, 507
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	461
TseI	GCWGC	1 cut(s)	474
TspDTI	ATGAA	2 cut(s)	342, 423
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	461
Van91I	CCANNNNNTGG	1 cut(s)	143
VneI	GTGCAC	1 cut(s)	393
XceI	RCATGY	1 cut(s)	550
XmiI	GTMKAC	1 cut(s)	179
XspI	CTAG	2 cut(s)	344, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.