Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Reverse (-)

15119315 .. 15122191

Gene Structure 2877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG114700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCTCTGCACTTCGCTCCTCGCAGCTCATTGCTTTGTCTGTGATGGCGTAGATGGCCCCTGTGTTCTTAAATTCAATCAAGTGGGGTTGACAATTCGGGCAAGACTACGATTGTGCTCACGATTAATGGGGAGGACACCAGCCTTGTCACTCCCACTCTCGGCTTCAACATCAACACCCTCACTTACCAAAAGTAACTTCTTTCCTTTATGCAACACTAGCAATGATTTCGGTTTATTGAATTTGTATTTATATGATTTTGGTATATGGGATGTGGGGGTTCAAAATACAATACCATCTTATTGGAGAAACTATTTTGAACAAACTGATGGTCTTGTATACAATTCAGATCTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006457 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

119

Amino Acids

13.24

Weight (kDa)

6.51

Isoelectric Point (pI)

17.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	85 - 117	9.1e-08	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	339
AcsI	RAATTY	2 cut(s)	71, 241
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	5 cut(s)	76, 168, 241, 284, 320
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw21I	GWGCWC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	2 cut(s)	71, 241
ArsI	GACNNNNNNTTYG	2 cut(s)	316, 348
AseI	ATTAAT	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	35
BccI	CCATC	4 cut(s)	38, 47, 304, 323
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BfaI	CTAG	1 cut(s)	219
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse3DI	GCAATG	2 cut(s)	28, 229
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	2 cut(s)	28, 229
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	35
BshFI	GGCC	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	160
BsnI	GGCC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	349
BspANI	GGCC	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	58
BsrDI	GCAATG	2 cut(s)	28, 229
BssMI	GATC	1 cut(s)	349
BssNAI	GTATAC	1 cut(s)	340
Bst1107I	GTATAC	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 219
BstV1I	GCAGC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	349
BstXI	CCANNNNNNTGG	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	349
BstZ17I	GTATAC	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	56
CviJI	RGCY	4 cut(s)	26, 57, 143, 164
CviKI_1	RGCY	4 cut(s)	26, 57, 143, 164
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
FaiI	YATR	6 cut(s)	211, 253, 255, 266, 268, 340
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
Hpy166II	GTNNAC	2 cut(s)	90, 340
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	1 cut(s)	120
Hpy8I	GTNNAC	2 cut(s)	90, 340
HpyCH4V	TGCA	2 cut(s)	9, 213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 219
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	1 cut(s)	21
LpnPI	CCDG	2 cut(s)	73, 153
Lsp1109I	GCAGC	1 cut(s)	35
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	147, 194
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	5 cut(s)	71, 93, 241, 343, 355
MnlI	CCTC	3 cut(s)	29, 126, 190
MseI	TTAA	3 cut(s)	69, 125, 354
MwoI	GCNNNNNNNGC	2 cut(s)	54, 219
NdeII	GATC	1 cut(s)	349
NlaIV	GGNNCC	1 cut(s)	58
NmeAIII	GCCGAG	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	25
PshBI	ATTAAT	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	349
SaqAI	TTAA	3 cut(s)	69, 125, 354
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	1 cut(s)	28
Sse9I	AATT	5 cut(s)	71, 93, 241, 343, 355
SspMI	CTAG	1 cut(s)	219
TasI	AATT	5 cut(s)	71, 93, 241, 343, 355
Tru1I	TTAA	3 cut(s)	69, 125, 354
Tru9I	TTAA	3 cut(s)	69, 125, 354
TseFI	GTSAC	1 cut(s)	147
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	147
VspI	ATTAAT	1 cut(s)	125
XapI	RAATTY	2 cut(s)	71, 241
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.