Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Forward (+)

1510726 .. 1511915

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG020200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCCCCTGTATTCGCAAATTCAATCAAGGTACAAGAGTTTCTGTACTTCATTTATACTGGGGTTGACAATTCGGGCAAGACTACGATTGTGCTCACGATTAATGGGGAGGACACCAGCCTTGTCACTCCCACTCTCGGCTTCAACATCAACACCCTCACTTACCAAAACTCCAACTTCAATGGGGAAACAAGAGGCATCCATCCAAGTAAAGCTGTTCTTTTAAGAAACAAGATGTATTTGAAGTGGAATGTGGCAATGTGCAGTGAACGGTTGAGGCACCCCAGTGGCTTTACACTACCACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

102

Amino Acids

11.43

Weight (kDa)

9.25

Isoelectric Point (pI)

29.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	12 - 61	5.9e-10	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	19
AfaI	GTAC	2 cut(s)	33, 47
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	4 cut(s)	24, 145, 181, 244
AleI	CACNNNNGTG	1 cut(s)	285
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw21I	GWGCWC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	19
AseI	ATTAAT	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	4
BaeI	ACNNNNGTAYC	2 cut(s)	23, 56
BanI	GGYRCC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	96
BccI	CCATC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 281
BmrI	ACTGGG	2 cut(s)	69, 279
BmsI	GCATC	1 cut(s)	207
BmuI	ACTGGG	2 cut(s)	69, 279
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	2 cut(s)	64, 285
Bse3DI	GCAATG	1 cut(s)	264
BseGI	GGATG	2 cut(s)	198, 202
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	264
BseNI	ACTGG	2 cut(s)	64, 285
BsgI	GTGCAG	1 cut(s)	283
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	137
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	6, 281
BspT107I	GGYRCC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	2 cut(s)	64, 285
Bst4CI	ACNGT	1 cut(s)	273
BstF5I	GGATG	2 cut(s)	198, 202
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	198, 202
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	2 cut(s)	271, 292
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	32, 46
CviJI	RGCY	5 cut(s)	5, 120, 141, 215, 291
CviKI_1	RGCY	5 cut(s)	5, 120, 141, 215, 291
CviQI	GTAC	2 cut(s)	32, 46
FaiI	YATR	1 cut(s)	57
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FokI	GGATG	2 cut(s)	185, 189
HaeIII	GGCC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	67, 269
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	2 cut(s)	67, 269
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4V	TGCA	1 cut(s)	264
LpnPI	CCDG	4 cut(s)	21, 45, 130, 298
LweI	GCATC	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	2 cut(s)	19, 70
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	4 cut(s)	103, 167, 188, 270
MseI	TTAA	2 cut(s)	102, 224
MslI	CAYNNNNRTG	1 cut(s)	285
NlaIV	GGNNCC	2 cut(s)	6, 281
NmeAIII	GCCGAG	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	124
OliI	CACNNNNGTG	1 cut(s)	285
PshBI	ATTAAT	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	6, 281
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	2 cut(s)	33, 47
RsaNI	GTAC	2 cut(s)	32, 46
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	102, 224
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	2 cut(s)	33, 217
SfaNI	GCATC	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	2 cut(s)	19, 70
TaaI	ACNGT	1 cut(s)	273
TasI	AATT	2 cut(s)	19, 70
TatI	WGTACW	1 cut(s)	45
Tru1I	TTAA	2 cut(s)	102, 224
Tru9I	TTAA	2 cut(s)	102, 224
TscAI	CASTG	2 cut(s)	271, 292
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	40
TspRI	CASTG	2 cut(s)	271, 292
VspI	ATTAAT	1 cut(s)	102
XapI	RAATTY	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.