Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Reverse (-)

20053554 .. 20067189

Gene Structure 13636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG129200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGCTCTGCACTTCGCTCCTCGCAGCTCATTGCTTTGTCTGTGATGGCGTAGATGGCCCCTGTGTTCTTAAATTCAATCAAGTGGGGTTGACAATTCGGGCAAGACTACGATTGTGCTCACGATTAATGGGGAGGACACCAGCCTTGTCACTCCCACTCTCGGCTTCAACATCAACACCCTCACTTACCAAAAGACATAAAAGGTGCCCTTACTCTAGAAGAAATTTCCAAGCTCTTGAGAAGTTGCTGAAGGATTTGCTGGTAGATTTGCTACTGGAAATGAAGTCACCACAGATTGCTATAGCTACAGCAAGGTTCAATATAAACATGCTCCAACTTCAATGGGGAAACAAGAGGCATCCTGAACGGTTGAGGCAATCCACCCCAGTGGCTTTACACTACCACTTTAGCCCCAGCGAAGATGACTCTGAGCTGTCCGTTCCGGAGAATCTCAACGAAGACCTTCTCAGTCAAGGCATTGACATCAACAACATCGACTTGGATGGCCACACCGTGCTGCACATCGCCGCCTGGGAAGGTCACGTCTACGTTTGCAGGTTCTTGCTCAGCTACAAGGCCAACATCAATGGTCACGATCGCTGGGGCAGTACGCTACTACACTTTAATCTGCTCTTCTTCTCAATATGTGGACATGCAGTTGTCGTCAACATCAGGCCGTTGATTACCTCCGAGATTTTGGTCGGCTGCACCGATTACATTTCCTCTTGCTCGCACATAGTCTTCACCTTCGCCTCCGGCAACATATTTCCTCCATCAGATGCTCGATCTGACGATCCAGATCCCTGTGAGACGGCATCTTTTCACCTCCTCGTCCCGAGCTTTTTCCTCAGATCTCAAACGACCGCTGATTCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009898 GO:0009987 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045087 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098552 GO:0098562 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Pkinase_Tyr

Protein Analysis

292

Amino Acids

32.63

Weight (kDa)

6.66

Isoelectric Point (pI)

61.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	154 - 207	2.7e-07	Ankyrin repeats (3 copies)
Ank_5	PF13857	155 - 207	5.4e-06	Ankyrin repeats (many copies)
Ank	PF00023	168 - 197	9e-07	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	546
AccB1I	GGYRCC	1 cut(s)	204
AccI	GTMKAC	1 cut(s)	546
AccIII	TCCGGA	1 cut(s)	442
AciI	CCGC	2 cut(s)	528, 864
AclWI	GGATC	2 cut(s)	788, 794
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	2 cut(s)	71, 223
AcuI	CTGAAG	1 cut(s)	269
AdeI	CACNNNGTG	1 cut(s)	514
AfaI	GTAC	1 cut(s)	610
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	4 cut(s)	76, 168, 319, 341
AjiI	CACGTC	1 cut(s)	544
AjnI	CCWGG	1 cut(s)	530
AleI	CACNNNNGTG	1 cut(s)	386
AluBI	AGCT	6 cut(s)	26, 233, 305, 433, 570, 840
AluI	AGCT	6 cut(s)	26, 233, 305, 433, 570, 840
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	803
AlwI	GGATC	2 cut(s)	788, 794
Ama87I	CYCGRG	1 cut(s)	835
Aor13HI	TCCGGA	1 cut(s)	442
AoxI	GGCC	4 cut(s)	55, 505, 576, 674
ApeKI	GCWGC	3 cut(s)	23, 517, 705
ApoI	RAATTY	2 cut(s)	71, 223
AseI	ATTAAT	1 cut(s)	125
Asp700I	GAANNNNTTC	1 cut(s)	462
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	279, 736, 815
AvaI	CYCGRG	1 cut(s)	835
BaeGI	GKGCMC	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	507
BanI	GGYRCC	1 cut(s)	204
BbsI	GAAGAC	2 cut(s)	465, 733
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	3 cut(s)	35, 504, 692
BccI	CCATC	4 cut(s)	38, 47, 497, 781
BceAI	ACGGC	2 cut(s)	661, 828
BciT130I	CCWGG	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	803
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	2 cut(s)	300, 306
BfuAI	ACCTGC	1 cut(s)	546
BglII	AGATCT	1 cut(s)	851
BisI	GCNGC	4 cut(s)	24, 518, 528, 706
BlpI	GCTNAGC	1 cut(s)	566
BlsI	GCNGC	4 cut(s)	25, 519, 529, 707
Bme1390I	CCNGG	1 cut(s)	532
BmeT110I	CYCGRG	1 cut(s)	835
BmgBI	CACGTC	1 cut(s)	544
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	2 cut(s)	58, 206
BmrFI	CCNGG	1 cut(s)	532
BmrI	ACTGGG	1 cut(s)	380
BmsI	GCATC	3 cut(s)	367, 769, 824
BmuI	ACTGGG	1 cut(s)	380
BpiI	GAAGAC	2 cut(s)	465, 733
Bpu1102I	GCTNAGC	1 cut(s)	566
BpuEI	CTTGAG	1 cut(s)	257
BsaBI	GATNNNNATC	1 cut(s)	798
BsaJI	CCNNGG	1 cut(s)	531
BsaWI	WCCGGW	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	2 cut(s)	279, 386
Bse3DI	GCAATG	1 cut(s)	28
Bse8I	GATNNNNATC	1 cut(s)	798
BseAI	TCCGGA	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	532
BseDI	CCNNGG	1 cut(s)	531
BseGI	GGATG	2 cut(s)	358, 508
BseJI	GATNNNNATC	1 cut(s)	798
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	28
BseMII	CTCAG	4 cut(s)	420, 481, 580, 862
BseNI	ACTGG	2 cut(s)	279, 386
BseRI	GAGGAG	2 cut(s)	8, 818
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	3 cut(s)	35, 504, 692
BseYI	CCCAGC	2 cut(s)	413, 600
BsgI	GTGCAG	2 cut(s)	503, 691
Bsh1285I	CGRYCG	2 cut(s)	598, 864
BshFI	GGCC	4 cut(s)	57, 507, 578, 676
BshNI	GGYRCC	1 cut(s)	204
BsiEI	CGRYCG	2 cut(s)	598, 864
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	835
BsiSI	CCGG	2 cut(s)	443, 756
BslFI	GGGAC	1 cut(s)	818
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	803
BsmBI	CGTCTC	1 cut(s)	803
BsmFI	GGGAC	1 cut(s)	818
BsnI	GGCC	4 cut(s)	57, 507, 578, 676
BsoBI	CYCGRG	1 cut(s)	835
Bsp1286I	GDGCHC	2 cut(s)	119, 209
Bsp13I	TCCGGA	1 cut(s)	442
Bsp143I	GATC	5 cut(s)	595, 785, 793, 799, 851
Bsp1720I	GCTNAGC	1 cut(s)	566
BspACI	CCGC	2 cut(s)	528, 864
BspANI	GGCC	4 cut(s)	57, 507, 578, 676
BspCNI	CTCAG	4 cut(s)	421, 480, 579, 861
BspEI	TCCGGA	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	58, 206
BspMI	ACCTGC	1 cut(s)	546
BspPI	GGATC	2 cut(s)	788, 794
BspQI	GCTCTTC	1 cut(s)	638
BspT107I	GGYRCC	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	28
BsrI	ACTGG	2 cut(s)	279, 386
BssECI	CCNNGG	1 cut(s)	531
BssMI	GATC	5 cut(s)	595, 785, 793, 799, 851
Bst2UI	CCWGG	1 cut(s)	532
Bst4CI	ACNGT	2 cut(s)	369, 514
Bst6I	CTCTTC	1 cut(s)	638
BstC8I	GCNNGC	1 cut(s)	731
BstDEI	CTNAG	4 cut(s)	429, 467, 566, 848
BstF5I	GGATG	2 cut(s)	358, 508
BstKTI	GATC	5 cut(s)	598, 788, 796, 802, 854
BstMAI	GTCTC	1 cut(s)	803
BstMBI	GATC	5 cut(s)	595, 785, 793, 799, 851
BstMCI	CGRYCG	2 cut(s)	598, 864
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	532
BstNSI	RCATGY	2 cut(s)	331, 656
BstSCI	CCNGG	1 cut(s)	530
BstSFI	CTRYAG	2 cut(s)	300, 306
BstSLI	GKGCMC	1 cut(s)	209
BstV1I	GCAGC	3 cut(s)	35, 504, 692
BstV2I	GAAGAC	2 cut(s)	465, 733
BstX2I	RGATCY	2 cut(s)	799, 851
BstXI	CCANNNNNNTGG	1 cut(s)	388
BstYI	RGATCY	2 cut(s)	799, 851
BsuRI	GGCC	4 cut(s)	57, 507, 578, 676
BtgZI	GCGATG	1 cut(s)	508
BtrI	CACGTC	1 cut(s)	544
BtsCI	GGATG	2 cut(s)	358, 508
BtsIMutI	CAGTG	1 cut(s)	393
BveI	ACCTGC	1 cut(s)	546
Cac8I	GCNNGC	1 cut(s)	731
Cfr13I	GGNCC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	609
CviAII	CATG	2 cut(s)	328, 653
CviQI	GTAC	1 cut(s)	609
DdeI	CTNAG	4 cut(s)	429, 467, 566, 848
DpnI	GATC	5 cut(s)	597, 787, 795, 801, 853
DpnII	GATC	5 cut(s)	595, 785, 793, 799, 851
DraIII	CACNNNGTG	1 cut(s)	514
EaeI	YGGCCR	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	638
Eco57I	CTGAAG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	835
EcoRII	CCWGG	1 cut(s)	530
Esp3I	CGTCTC	1 cut(s)	803
FaeI	CATG	2 cut(s)	331, 656
FaiI	YATR	8 cut(s)	198, 302, 323, 329, 646, 654, 737, 764
FalI	AAGNNNNNCTT	2 cut(s)	193, 225
FaqI	GGGAC	1 cut(s)	818
FatI	CATG	2 cut(s)	327, 652
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	4 cut(s)	24, 518, 528, 706
FokI	GGATG	2 cut(s)	345, 515
Fsp4HI	GCNGC	4 cut(s)	24, 518, 528, 706
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	4 cut(s)	24, 518, 528, 706
GsaI	CCCAGC	2 cut(s)	417, 604
HaeIII	GGCC	4 cut(s)	57, 507, 578, 676
HapII	CCGG	2 cut(s)	443, 756
Hin1II	CATG	2 cut(s)	331, 656
HincII	GTYRAC	2 cut(s)	90, 667
HindII	GTYRAC	2 cut(s)	90, 667
HinfI	GANTC	3 cut(s)	425, 448, 869
HpaII	CCGG	2 cut(s)	443, 756
HphI	GGTGA	3 cut(s)	279, 736, 815
Hpy166II	GTNNAC	4 cut(s)	90, 547, 650, 667
Hpy188I	TCNGA	6 cut(s)	430, 691, 778, 790, 851, 874
Hpy188III	TCNNGA	8 cut(s)	120, 216, 236, 362, 443, 593, 797, 835
Hpy8I	GTNNAC	4 cut(s)	90, 547, 650, 667
HpyAV	CCTTC	4 cut(s)	244, 473, 530, 757
HpyCH4III	ACNGT	2 cut(s)	369, 514
HpyCH4IV	ACGT	2 cut(s)	543, 549
HpyCH4V	TGCA	5 cut(s)	9, 520, 555, 656, 708
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	4 cut(s)	429, 467, 566, 848
HpySE526I	ACGT	2 cut(s)	543, 549
Hsp92II	CATG	2 cut(s)	331, 656
Kpn2I	TCCGGA	1 cut(s)	442
Kzo9I	GATC	5 cut(s)	595, 785, 793, 799, 851
LguI	GCTCTTC	1 cut(s)	638
LmnI	GCTCC	2 cut(s)	21, 336
Lsp1109I	GCAGC	3 cut(s)	35, 504, 692
LweI	GCATC	3 cut(s)	367, 769, 824
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	2 cut(s)	543, 549
MaeIII	GTNAC	4 cut(s)	147, 285, 539, 590
MalI	GATC	5 cut(s)	597, 787, 795, 801, 853
MboI	GATC	5 cut(s)	595, 785, 793, 799, 851
MboII	GAAGA	6 cut(s)	231, 431, 470, 625, 628, 733
MflI	RGATCY	2 cut(s)	799, 851
MhlI	GDGCHC	2 cut(s)	119, 209
MlsI	TGGCCA	1 cut(s)	507
MluCI	AATT	3 cut(s)	71, 93, 223
MluNI	TGGCCA	1 cut(s)	507
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	358
Mox20I	TGGCCA	1 cut(s)	507
MroI	TCCGGA	1 cut(s)	442
MroXI	GAANNNNTTC	1 cut(s)	462
MscI	TGGCCA	1 cut(s)	507
MseI	TTAA	3 cut(s)	69, 125, 624
MslI	CAYNNNNRTG	1 cut(s)	386
Msp20I	TGGCCA	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	866
MspI	CCGG	2 cut(s)	443, 756
MspR9I	CCNGG	1 cut(s)	532
MvaI	CCWGG	1 cut(s)	532
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	5 cut(s)	595, 785, 793, 799, 851
NlaIII	CATG	2 cut(s)	331, 656
NlaIV	GGNNCC	2 cut(s)	58, 206
NmeAIII	GCCGAG	1 cut(s)	140
NmuCI	GTSAC	4 cut(s)	147, 285, 539, 590
NspI	RCATGY	2 cut(s)	331, 656
OliI	CACNNNNGTG	1 cut(s)	386
PciSI	GCTCTTC	1 cut(s)	638
PcsI	WCGNNNNNNNCGW	1 cut(s)	708
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	448, 869
PkrI	GCNGC	4 cut(s)	25, 519, 529, 707
Ple19I	CGATCG	1 cut(s)	598
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PshBI	ATTAAT	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	530
PspFI	CCCAGC	2 cut(s)	413, 600
PspGI	CCWGG	1 cut(s)	530
PspN4I	GGNNCC	2 cut(s)	58, 206
PspPI	GGNCC	1 cut(s)	56
PsuI	RGATCY	2 cut(s)	799, 851
PvuI	CGATCG	1 cut(s)	598
RsaI	GTAC	1 cut(s)	610
RsaNI	GTAC	1 cut(s)	609
RseI	CAYNNNNRTG	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	638
SaqAI	TTAA	3 cut(s)	69, 125, 624
SatI	GCNGC	4 cut(s)	24, 518, 528, 706
Sau3AI	GATC	5 cut(s)	595, 785, 793, 799, 851
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	532
SduI	GDGCHC	2 cut(s)	119, 209
SfaNI	GCATC	3 cut(s)	367, 769, 824
SfcI	CTRYAG	2 cut(s)	300, 306
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	3 cut(s)	71, 93, 223
SsiI	CCGC	2 cut(s)	528, 864
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	530
TaaI	ACNGT	2 cut(s)	369, 514
TaiI	ACGT	2 cut(s)	546, 552
TaqI	TCGA	2 cut(s)	495, 784
TasI	AATT	3 cut(s)	71, 93, 223
TauI	GCSGC	1 cut(s)	530
TfiI	GAWTC	2 cut(s)	448, 869
Tru1I	TTAA	3 cut(s)	69, 125, 624
Tru9I	TTAA	3 cut(s)	69, 125, 624
TscAI	CASTG	1 cut(s)	393
TseFI	GTSAC	4 cut(s)	147, 285, 539, 590
TseI	GCWGC	3 cut(s)	23, 517, 705
Tsp45I	GTSAC	4 cut(s)	147, 285, 539, 590
TspDTI	ATGAA	1 cut(s)	296
TspGWI	ACGGA	1 cut(s)	427
TspRI	CASTG	1 cut(s)	393
VspI	ATTAAT	1 cut(s)	125
XapI	RAATTY	2 cut(s)	71, 223
XbaI	TCTAGA	1 cut(s)	215
XceI	RCATGY	2 cut(s)	331, 656
XmiI	GTMKAC	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.