Rorug07G0199700
ERF Family

Belongs to the small GTPase superfamily. Arf family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
17309858 .. 17311988
2131 bp
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UTR
Exon/CDS
Intron
Rorug07G0199700.1

Sequence Viewer

Length: 447 bp
ATGGCGGGAGCCGCGGCAGCTTCACGCTGCATCTTCTGCCAGATCGCCGGAAAATCCTCCTCTACCCCTCTCCTCCACACGGATGAAAAGGTCGTTGCTTTTCAAGACATCAAACCCGCTGCTACAAGGCACTACTTGGTTATTCCTGTGGATCACATCCCAACTGTTAATGATCTTCAAAGGAGACCTGAAGACTACTCTTTGGCAAGTCACATGTTAGAAGTGGGGAAAACACTATTACAAAGAGATGCACCTCAATGCCATCAATACAGGTTTGGCTTTCATCAACCTCCATTTAACTCTGTTAACCATCTTCACCTCCATTGTTTTGCACTACCTTATACACCCAGATGGAAACATATAAAATATTTGTCTGTGGGATCATTTGGATTTATTGAAGCTGAAAAGTTGTTGGAGAAGATTAAGCCTCTGCCTTCACAACTGTGA

Protein Analysis

148

Amino Acids

16.74

Weight (kDa)

8.95

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DcpS_C PF11969 9 - 120 5.8e-30 Scavenger mRNA decapping enzyme C-term binding
HIT PF01230 24 - 110 8.3e-10 HIT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 14
AciI CCGC 4 cut(s) 5, 12, 14, 117
AclWI GGATC 2 cut(s) 159, 388
AcuI CTGAAG 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 3 cut(s) 104, 179, 398
AleI CACNNNNGTG 1 cut(s) 442
AluBI AGCT 2 cut(s) 20, 401
AluI AGCT 2 cut(s) 20, 401
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 2 cut(s) 159, 388
ApeKI GCWGC 3 cut(s) 17, 27, 119
AsuHPI GGTGA 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 3 cut(s) 14, 29, 106
BccI CCATC 3 cut(s) 270, 318, 345
BcoDI GTCTC 1 cut(s) 178
BisI GCNGC 5 cut(s) 12, 15, 18, 28, 120
BlsI GCNGC 5 cut(s) 13, 16, 19, 29, 121
BmiI GGNNCC 1 cut(s) 10
BmsI GCATC 2 cut(s) 39, 238
BpiI GAAGAC 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 2 cut(s) 88, 156
BseLI CCNNNNNNNGG 1 cut(s) 79
BseRI GAGGAG 2 cut(s) 49, 62
BseXI GCAGC 3 cut(s) 14, 29, 106
Bsh1236I CGCG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 178
Bso31I GGTCTC 1 cut(s) 178
Bsp143I GATC 4 cut(s) 42, 151, 172, 380
BspACI CCGC 4 cut(s) 5, 12, 14, 117
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 10
BspPI GGATC 2 cut(s) 159, 388
BspTNI GGTCTC 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 4 cut(s) 42, 151, 172, 380
Bst4CI ACNGT 2 cut(s) 166, 444
BstAPI GCANNNNNTGC 1 cut(s) 36
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 2 cut(s) 88, 156
BstFNI CGCG 1 cut(s) 14
BstKTI GATC 4 cut(s) 45, 154, 175, 383
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 4 cut(s) 42, 151, 172, 380
BstMWI GCNNNNNNNGC 3 cut(s) 11, 17, 36
BstNSI RCATGY 1 cut(s) 217
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 3 cut(s) 14, 29, 106
BstV2I GAAGAC 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 2 cut(s) 88, 156
Cfr42I CCGCGG 1 cut(s) 15
CviAII CATG 1 cut(s) 214
CviJI RGCY 5 cut(s) 11, 20, 279, 401, 427
CviKI_1 RGCY 5 cut(s) 11, 20, 279, 401, 427
DpnI GATC 4 cut(s) 44, 153, 174, 382
DpnII GATC 4 cut(s) 42, 151, 172, 380
Eco31I GGTCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 210
FaeI CATG 1 cut(s) 217
FaiI YATR 4 cut(s) 215, 342, 360, 362
FatI CATG 1 cut(s) 213
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 5 cut(s) 12, 15, 18, 28, 120
FokI GGATG 2 cut(s) 95, 143
Fsp4HI GCNGC 5 cut(s) 12, 15, 18, 28, 120
GluI GCNGC 5 cut(s) 12, 15, 18, 28, 120
HapII CCGG 1 cut(s) 48
Hin1II CATG 1 cut(s) 217
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 1 cut(s) 48
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 1 cut(s) 307
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 1 cut(s) 444
HpyCH4III ACNGT 2 cut(s) 166, 444
HpyCH4V TGCA 3 cut(s) 30, 251, 332
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 17, 36
Hsp92II CATG 1 cut(s) 217
KspAI GTTAAC 1 cut(s) 307
KspI CCGCGG 1 cut(s) 15
Kzo9I GATC 4 cut(s) 42, 151, 172, 380
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 6 cut(s) 53, 61, 159, 201, 256, 361
Lsp1109I GCAGC 3 cut(s) 14, 29, 106
LweI GCATC 2 cut(s) 39, 238
MaeIII GTNAC 1 cut(s) 209
MalI GATC 4 cut(s) 44, 153, 174, 382
MboI GATC 4 cut(s) 42, 151, 172, 380
MboII GAAGA 5 cut(s) 25, 167, 203, 305, 430
MmeI TCCRAC 1 cut(s) 393
MnlI CCTC 8 cut(s) 67, 70, 78, 83, 264, 300, 329, 438
MseI TTAA 4 cut(s) 168, 297, 306, 423
MslI CAYNNNNRTG 4 cut(s) 81, 256, 349, 442
MspA1I CMGCKG 2 cut(s) 14, 119
MspI CCGG 1 cut(s) 48
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 3 cut(s) 11, 17, 36
NdeII GATC 4 cut(s) 42, 151, 172, 380
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 209
NspI RCATGY 1 cut(s) 217
OliI CACNNNNGTG 1 cut(s) 442
PciI ACATGT 1 cut(s) 213
PkrI GCNGC 5 cut(s) 13, 16, 19, 29, 121
PscI ACATGT 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 10
RseI CAYNNNNRTG 4 cut(s) 81, 256, 349, 442
SacII CCGCGG 1 cut(s) 15
SaqAI TTAA 4 cut(s) 168, 297, 306, 423
SatI GCNGC 5 cut(s) 12, 15, 18, 28, 120
Sau3AI GATC 4 cut(s) 42, 151, 172, 380
SetI ASST 9 cut(s) 22, 93, 190, 256, 275, 292, 321, 340, 403
SfaNI GCATC 2 cut(s) 39, 238
Sfr303I CCGCGG 1 cut(s) 15
SgrBI CCGCGG 1 cut(s) 15
SmiMI CAYNNNNRTG 4 cut(s) 81, 256, 349, 442
SsiI CCGC 4 cut(s) 5, 12, 14, 117
SspI AATATT 1 cut(s) 368
TaaI ACNGT 2 cut(s) 166, 444
TauI GCSGC 2 cut(s) 14, 17
Tru1I TTAA 4 cut(s) 168, 297, 306, 423
Tru9I TTAA 4 cut(s) 168, 297, 306, 423
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 3 cut(s) 17, 27, 119
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 99, 272
TspGWI ACGGA 1 cut(s) 95
XceI RCATGY 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.