Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Forward (+)

28522912 .. 28523469

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g25830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGGCTTCTCAGCATTATTCGAAAAATTAAAAGGAAGGAAAAAGAAATACGTATACTCATGGTCGGGCTTGACAATTCTGGTAAGACTACCATTGTGCTGAGAATTAATGGAGAGGACACCAGCGTTGTCAGTCCCACACTCGGCTTCAACATCAAGACCATCATTTACCAAAAGTATACCCTCAACATATGGGATGTCGGTGGCCAGAAAACAATAAGATCGTACTGGAGAAACTATTTTGAGCAAACTGATGGTCTGGTATGGGTAGTTGACAGTTCAGATCTTAGAAGGTTAGAAGACTGCAAAGCGGAACTCGACAATCTTTTGAAGGAGGAGAGGCTTTCTGGATCATCCTTGTTGATACTAGCAAACAAGCAGGACATAAAAGGTGCCCTTACTCCGGAAGAAATTGCCAAGGTTTTGAACTTGGAGGCCATGGATAAAACTCGGCATTGGCAAATTGTCGGCTGCAGTGCATTCACTGGTGAGGGACTGCTTGAAGGATTCGATTGGTTGGTCCAAGACATTGCCTCTCGGATCTATGTTCTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

186

Amino Acids

21.05

Weight (kDa)

5.96

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	4 - 177	5.2e-69	ADP-ribosylation factor family
SRPRB	PF09439	16 - 145	4e-09	Signal recognition particle receptor beta subunit
Roc	PF08477	18 - 128	4.6e-12	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	18 - 177	6.8e-12	Ras family
Gtr1_RagA	PF04670	18 - 111	1.6e-07	Gtr1/RagA G protein conserved region
MMR_HSR1	PF01926	18 - 126	1.6e-06	50S ribosome-binding GTPase
G-alpha	PF00503	46 - 103	2.6e-06	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	392
AccI	GTMKAC	2 cut(s)	55, 179
AccIII	TCCGGA	1 cut(s)	403
AciI	CCGC	1 cut(s)	311
AclWI	GGATC	2 cut(s)	358, 548
AcoI	YGGCCR	1 cut(s)	205
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	2 cut(s)	143, 403
AgsI	TTSAA	4 cut(s)	151, 331, 427, 503
AlwI	GGATC	2 cut(s)	358, 548
Aor13HI	TCCGGA	1 cut(s)	403
AoxI	GGCC	2 cut(s)	205, 435
ApeKI	GCWGC	1 cut(s)	471
ArsI	GACNNNNNNTTYG	2 cut(s)	241, 273
AseI	ATTAAT	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	520
AsuHPI	GGTGA	1 cut(s)	500
AsuII	TTCGAA	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	520
BaeGI	GKGCMC	1 cut(s)	397
BalI	TGGCCA	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	306
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	2 cut(s)	170, 248
BfaI	CTAG	1 cut(s)	368
BfmI	CTRYAG	1 cut(s)	472
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	1 cut(s)	472
BlsI	GCNGC	1 cut(s)	473
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	250
Bpu14I	TTCGAA	1 cut(s)	22
BsaAI	YACGTR	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	417, 438
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 403
Bse1I	ACTGG	2 cut(s)	233, 490
Bse3DI	GCAATG	1 cut(s)	528
BseAI	TCCGGA	1 cut(s)	403
BseDI	CCNNGG	2 cut(s)	417, 438
BseGI	GGATG	2 cut(s)	202, 353
BseLI	CCNNNNNNNGG	2 cut(s)	143, 403
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	2 cut(s)	25, 92
BseNI	ACTGG	2 cut(s)	233, 490
BseRI	GAGGAG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	1 cut(s)	458
BshFI	GGCC	2 cut(s)	207, 437
BshNI	GGYRCC	1 cut(s)	392
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	2 cut(s)	120, 507
BslI	CCNNNNNNNGG	2 cut(s)	143, 403
BsmFI	GGGAC	2 cut(s)	120, 507
BsmI	GAATGC	1 cut(s)	479
BsnI	GGCC	2 cut(s)	207, 437
Bsp119I	TTCGAA	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp13I	TCCGGA	1 cut(s)	403
Bsp143I	GATC	4 cut(s)	221, 283, 350, 540
Bsp19I	CCATGG	1 cut(s)	438
BspACI	CCGC	1 cut(s)	311
BspANI	GGCC	2 cut(s)	207, 437
BspCNI	CTCAG	2 cut(s)	24, 93
BspEI	TCCGGA	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	394
BspMAI	CTGCAG	1 cut(s)	476
BspPI	GGATC	2 cut(s)	358, 548
BspT104I	TTCGAA	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	528
BsrI	ACTGG	2 cut(s)	233, 490
BssECI	CCNNGG	2 cut(s)	417, 438
BssMI	GATC	4 cut(s)	221, 283, 350, 540
BssNAI	GTATAC	2 cut(s)	56, 180
BssT1I	CCWWGG	2 cut(s)	417, 438
Bst1107I	GTATAC	2 cut(s)	56, 180
Bst4CI	ACNGT	1 cut(s)	278
BstBAI	YACGTR	1 cut(s)	53
BstBI	TTCGAA	1 cut(s)	22
BstDEI	CTNAG	3 cut(s)	11, 101, 287
BstDSI	CCRYGG	1 cut(s)	438
BstF5I	GGATG	2 cut(s)	202, 353
BstKTI	GATC	4 cut(s)	224, 286, 353, 543
BstMBI	GATC	4 cut(s)	221, 283, 350, 540
BstSFI	CTRYAG	1 cut(s)	472
BstSLI	GKGCMC	1 cut(s)	397
BstSNI	TACGTA	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	458
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	2 cut(s)	283, 540
BstYI	RGATCY	2 cut(s)	283, 540
BstZ17I	GTATAC	2 cut(s)	56, 180
BsuRI	GGCC	2 cut(s)	207, 437
BtgI	CCRYGG	1 cut(s)	438
BtsCI	GGATG	2 cut(s)	202, 353
BtsI	GCAGTG	1 cut(s)	481
BtsIMutI	CAGTG	2 cut(s)	481, 483
Cfr13I	GGNCC	1 cut(s)	520
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	2 cut(s)	61, 439
CviJI	RGCY	7 cut(s)	7, 70, 147, 207, 343, 437, 471
CviKI_1	RGCY	7 cut(s)	7, 70, 147, 207, 343, 437, 471
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	3 cut(s)	11, 101, 287
DpnI	GATC	4 cut(s)	223, 285, 352, 542
DpnII	GATC	4 cut(s)	221, 283, 350, 540
EaeI	YGGCCR	1 cut(s)	205
Eco105I	TACGTA	1 cut(s)	53
Eco130I	CCWWGG	2 cut(s)	417, 438
Eco47I	GGWCC	1 cut(s)	520
EcoT14I	CCWWGG	2 cut(s)	417, 438
ErhI	CCWWGG	2 cut(s)	417, 438
FaeI	CATG	2 cut(s)	64, 442
FaiI	YATR	9 cut(s)	56, 62, 180, 191, 193, 265, 386, 440, 546
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FaqI	GGGAC	2 cut(s)	120, 507
FatI	CATG	2 cut(s)	60, 438
FauNDI	CATATG	1 cut(s)	191
FblI	GTMKAC	2 cut(s)	55, 179
Fnu4HI	GCNGC	1 cut(s)	472
FokI	GGATG	2 cut(s)	209, 340
Fsp4HI	GCNGC	1 cut(s)	472
FspBI	CTAG	1 cut(s)	368
GluI	GCNGC	1 cut(s)	472
GsuI	CTGGAG	1 cut(s)	250
HaeIII	GGCC	2 cut(s)	207, 437
HapII	CCGG	1 cut(s)	404
Hin1II	CATG	2 cut(s)	64, 442
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	1 cut(s)	507
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	3 cut(s)	56, 180, 274
Hpy188I	TCNGA	2 cut(s)	283, 540
Hpy188III	TCNNGA	4 cut(s)	157, 348, 404, 551
Hpy8I	GTNNAC	3 cut(s)	56, 180, 274
HpyAV	CCTTC	4 cut(s)	31, 285, 325, 497
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	3 cut(s)	306, 474, 479
HpyF3I	CTNAG	3 cut(s)	11, 101, 287
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	64, 442
Kpn2I	TCCGGA	1 cut(s)	403
Kzo9I	GATC	4 cut(s)	221, 283, 350, 540
LpnPI	CCDG	9 cut(s)	66, 136, 214, 221, 245, 333, 365, 417, 471
Lsp1109I	GCAGC	1 cut(s)	458
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	1 cut(s)	52
MalI	GATC	4 cut(s)	223, 285, 352, 542
MboI	GATC	4 cut(s)	221, 283, 350, 540
MboII	GAAGA	2 cut(s)	311, 419
MflI	RGATCY	2 cut(s)	283, 540
MhlI	GDGCHC	1 cut(s)	397
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	5 cut(s)	27, 76, 105, 411, 462
MluNI	TGGCCA	1 cut(s)	207
MnlI	CCTC	7 cut(s)	109, 194, 328, 333, 427, 484, 544
Mox20I	TGGCCA	1 cut(s)	207
MroI	TCCGGA	1 cut(s)	403
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	2 cut(s)	30, 108
Msp20I	TGGCCA	1 cut(s)	207
MspI	CCGG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	479
NcoI	CCATGG	1 cut(s)	438
NdeI	CATATG	1 cut(s)	191
NdeII	GATC	4 cut(s)	221, 283, 350, 540
NlaIII	CATG	2 cut(s)	64, 442
NlaIV	GGNNCC	1 cut(s)	394
NmeAIII	GCCGAG	2 cut(s)	123, 430
NspV	TTCGAA	1 cut(s)	22
PctI	GAATGC	1 cut(s)	479
PfeI	GAWTC	1 cut(s)	507
PkrI	GCNGC	1 cut(s)	473
Ppu21I	YACGTR	1 cut(s)	53
PshBI	ATTAAT	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	1 cut(s)	520
PstI	CTGCAG	1 cut(s)	476
PsuI	RGATCY	2 cut(s)	283, 540
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	30, 108
SatI	GCNGC	1 cut(s)	472
Sau3AI	GATC	4 cut(s)	221, 283, 350, 540
Sau96I	GGNCC	1 cut(s)	520
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	4 cut(s)	55, 296, 394, 423
SfcI	CTRYAG	1 cut(s)	472
SfuI	TTCGAA	1 cut(s)	22
SinI	GGWCC	1 cut(s)	520
SnaBI	TACGTA	1 cut(s)	53
Sse9I	AATT	5 cut(s)	27, 76, 105, 411, 462
SsiI	CCGC	1 cut(s)	311
SspMI	CTAG	1 cut(s)	368
StyI	CCWWGG	2 cut(s)	417, 438
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	3 cut(s)	22, 318, 510
TasI	AATT	5 cut(s)	27, 76, 105, 411, 462
TfiI	GAWTC	1 cut(s)	507
Tru1I	TTAA	2 cut(s)	30, 108
Tru9I	TTAA	2 cut(s)	30, 108
TscAI	CASTG	2 cut(s)	481, 490
TseI	GCWGC	1 cut(s)	471
TspRI	CASTG	2 cut(s)	481, 490
VpaK11BI	GGWCC	1 cut(s)	520
VspI	ATTAAT	1 cut(s)	108
XmiI	GTMKAC	2 cut(s)	55, 179
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.