Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Forward (+)

46202785 .. 46204920

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20077

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGGGCTTCTCAACATTATTCGAGAAATTAAAAGGAAGGAAAAACAAATTCGTCTACTCATGGTTGGGCTTGACAATTCGGGCAAGACTACTATTGCGCTCACGATTAATGGGAGTAGGGATGGCAAAAATCCTCATCGGAGGTTATCAGGATCGTCCTTATTGATACTGGCAAATAAGCAGGACATAAAAGGTGCCCTTACTCTAGAAGAGATTTCCAAGGTTTTGAACTTGGAGGCTATGGATAAAACTCGACACTGGAATATTGTTGGCTGCAGTGCATACACGGGTGAGGGACTGCTTGAGGGATTTGATTGGTTGGTCCAAGATATTGCCTCTTTGGATCTATGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

118

Amino Acids

13.02

Weight (kDa)

8.64

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	4 - 36	8.2e-07	ADP-ribosylation factor family
Arf	PF00025	47 - 111	4.3e-16	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	55
AclWI	GGATC	2 cut(s)	160, 351
AcsI	RAATTY	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	229
AlwI	GGATC	2 cut(s)	160, 351
ApeKI	GCWGC	1 cut(s)	273
ApoI	RAATTY	1 cut(s)	48
AseI	ATTAAT	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	322
AsuHPI	GGTGA	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	322
BaeGI	GKGCMC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	206
BfmI	CTRYAG	1 cut(s)	274
BisI	GCNGC	1 cut(s)	274
BlsI	GCNGC	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	219
Bse1I	ACTGG	2 cut(s)	174, 263
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	127
BseNI	ACTGG	2 cut(s)	174, 263
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	260
BshNI	GGYRCC	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	309
BsmFI	GGGAC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	152, 343
BspLI	GGNNCC	1 cut(s)	196
BspMAI	CTGCAG	1 cut(s)	278
BspPI	GGATC	2 cut(s)	160, 351
BspT107I	GGYRCC	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	174, 263
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	2 cut(s)	152, 343
BssT1I	CCWWGG	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	2 cut(s)	155, 346
BstMBI	GATC	2 cut(s)	152, 343
BstSFI	CTRYAG	1 cut(s)	274
BstSLI	GKGCMC	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	127
BtsI	GCAGTG	1 cut(s)	283
BtsIMutI	CAGTG	2 cut(s)	256, 283
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	322
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	4 cut(s)	7, 70, 239, 273
CviKI_1	RGCY	4 cut(s)	7, 70, 239, 273
DpnI	GATC	2 cut(s)	154, 345
DpnII	GATC	2 cut(s)	152, 343
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	1 cut(s)	64
FaiI	YATR	5 cut(s)	62, 188, 242, 283, 349
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	274
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	274
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	274
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	4 cut(s)	23, 103, 150, 206
Hpy8I	GTNNAC	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	276, 281
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	2 cut(s)	152, 343
LpnPI	CCDG	4 cut(s)	135, 155, 167, 244
Lsp1109I	GCAGC	1 cut(s)	260
MaeI	CTAG	1 cut(s)	206
MalI	GATC	2 cut(s)	154, 345
MboI	GATC	2 cut(s)	152, 343
MboII	GAAGA	1 cut(s)	221
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	3 cut(s)	27, 48, 76
MnlI	CCTC	6 cut(s)	135, 144, 229, 286, 298, 346
MseI	TTAA	2 cut(s)	30, 108
NdeII	GATC	2 cut(s)	152, 343
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	275
PshBI	ATTAAT	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	322
PstI	CTGCAG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	343
SaqAI	TTAA	2 cut(s)	30, 108
SatI	GCNGC	1 cut(s)	274
Sau3AI	GATC	2 cut(s)	152, 343
Sau96I	GGNCC	1 cut(s)	322
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	3 cut(s)	146, 196, 225
SfcI	CTRYAG	1 cut(s)	274
SinI	GGWCC	1 cut(s)	322
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	3 cut(s)	27, 48, 76
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	219
TaqI	TCGA	2 cut(s)	22, 253
TasI	AATT	3 cut(s)	27, 48, 76
Tru1I	TTAA	2 cut(s)	30, 108
Tru9I	TTAA	2 cut(s)	30, 108
TscAI	CASTG	2 cut(s)	263, 283
TseI	GCWGC	1 cut(s)	273
TspRI	CASTG	2 cut(s)	263, 283
VpaK11BI	GGWCC	1 cut(s)	322
VspI	ATTAAT	1 cut(s)	108
XapI	RAATTY	1 cut(s)	48
XbaI	TCTAGA	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	55
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.