Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Forward (+)

12616903 .. 12619077

Gene Structure 2175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG153100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTATACGTTATTTGCTCGATTTGGATTTGTATATCAGTTTGATCTGATTCTTGTTAATTGGAGTAGATGGCACGACTCTTCCAGTGGTGAGGAAAACACAGAGACCCAGCAAAGCTTCGTAGAGAGGAAGCATCAGTTTCTTGGAATGGTCAACACCCAGAAACTGTATTTCGCCTGGTCTTTTGGGGTTGACAATTTGGGCAAGACTAGGATTGTGCTCACGATTAATGGGGAGGACACCAGCCTTGTCACTCCCACTCTCGGCTTCAACATCAACACCCTCACTTACCAAAACTCCAACTTCAATGGGGAAACAAGAGGCATCCTGAACGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

112

Amino Acids

12.89

Weight (kDa)

5.55

Isoelectric Point (pI)

24.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	61 - 103	3.1e-07	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	271, 307
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	1 cut(s)	117
AluI	AGCT	1 cut(s)	117
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	166
AseI	ATTAAT	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	222
BccI	CCATC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	210
Bme1390I	CCNGG	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	178
BmsI	GCATC	2 cut(s)	142, 333
BsaI	GGTCTC	1 cut(s)	98
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseNI	ACTGG	1 cut(s)	84
BseYI	CCCAGC	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	43
BssNAI	GTATAC	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	2 cut(s)	168, 335
Bst6I	CTCTTC	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	324
BstKTI	GATC	1 cut(s)	46
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	43
BstNI	CCWGG	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	176
BstZ17I	GTATAC	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	166
CviJI	RGCY	3 cut(s)	117, 246, 267
CviKI_1	RGCY	3 cut(s)	117, 246, 267
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	176
FaiI	YATR	2 cut(s)	6, 34
FblI	GTMKAC	1 cut(s)	5
FokI	GGATG	1 cut(s)	311
FspBI	CTAG	1 cut(s)	210
GsaI	CCCAGC	1 cut(s)	112
HincII	GTYRAC	2 cut(s)	154, 193
HindII	GTYRAC	2 cut(s)	154, 193
HindIII	AAGCTT	1 cut(s)	115
HinfI	GANTC	2 cut(s)	49, 77
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	3 cut(s)	6, 154, 193
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	2 cut(s)	223, 328
Hpy8I	GTNNAC	3 cut(s)	6, 154, 193
HpyCH4III	ACNGT	2 cut(s)	168, 335
HpyCH4IV	ACGT	1 cut(s)	8
HpySE526I	ACGT	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	43
LpnPI	CCDG	6 cut(s)	97, 122, 163, 173, 190, 256
LweI	GCATC	2 cut(s)	142, 333
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	2 cut(s)	58, 196
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	5 cut(s)	85, 120, 229, 293, 314
MseI	TTAA	2 cut(s)	57, 228
MspR9I	CCNGG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	178
NdeII	GATC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	49
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PshBI	ATTAAT	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	166
SaqAI	TTAA	2 cut(s)	57, 228
Sau3AI	GATC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	2 cut(s)	11, 119
SfaNI	GCATC	2 cut(s)	142, 333
Sse9I	AATT	2 cut(s)	58, 196
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	176
TaaI	ACNGT	2 cut(s)	168, 335
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	1 cut(s)	19
TasI	AATT	2 cut(s)	58, 196
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	2 cut(s)	57, 228
Tru9I	TTAA	2 cut(s)	57, 228
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	250
TspRI	CASTG	1 cut(s)	91
VspI	ATTAAT	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.