Rh7AG365600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000773
Physical Location & Seq
Forward (+)
47090254 .. 47090556
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG365600.1

Sequence Viewer

Length: 303 bp
ATGTTAGACTGGAGAGACAGAAAGCTACGTGTAGCCAGGGCTTATGTGATTTTGCTTGCATTTGTGAAGGTTGCTTTTCTTCACCAGCTAATGCAACCGCATATTTCTCCACATATAATCTTCCGTGCTATTTCTGTTTTTGGATACACTTTGATGCGCAACTTCATGCGATGCCTTTATGTTTATTTTGCAACTAGTCAAACACAGCATTTAATAAATTCACTGAACTATGATGTCAATTGCGATTTAAAATATCAGAGTGTACGTGGAAAACAATTGATAATTTTTCTGTACTGTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.99

Weight (kDa)

9.82

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 158
AciI CCGC 1 cut(s) 98
AcsI RAATTY 1 cut(s) 217
AfaI GTAC 2 cut(s) 264, 293
AflIII ACRYGT 1 cut(s) 28
AhlI ACTAGT 1 cut(s) 194
AjnI CCWGG 1 cut(s) 35
AluBI AGCT 2 cut(s) 25, 88
AluI AGCT 2 cut(s) 25, 88
Alw26I GTCTC 1 cut(s) 9
ApoI RAATTY 1 cut(s) 217
AspLEI GCGC 1 cut(s) 159
AsuHPI GGTGA 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 37
BciVI GTATCC 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 9
BcuI ACTAGT 1 cut(s) 194
BfaI CTAG 1 cut(s) 195
BfuI GTATCC 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 37
BmsI GCATC 2 cut(s) 144, 161
BpmI CTGGAG 1 cut(s) 31
BsaAI YACGTR 2 cut(s) 29, 266
BsaJI CCNNGG 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 14
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 9
BspACI CCGC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 296
BstBAI YACGTR 2 cut(s) 29, 266
BstC8I GCNNGC 1 cut(s) 57
BstHHI GCGC 1 cut(s) 159
BstMAI GTCTC 1 cut(s) 9
BstNI CCWGG 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 35
BsuI GTATCC 1 cut(s) 137
BtgZI GCGATG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 57
CfoI GCGC 1 cut(s) 159
Csp6I GTAC 2 cut(s) 263, 292
CviAII CATG 1 cut(s) 166
CviJI RGCY 4 cut(s) 25, 35, 41, 88
CviKI_1 RGCY 4 cut(s) 25, 35, 41, 88
CviQI GTAC 2 cut(s) 263, 292
DraI TTTAAA 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 35
FaeI CATG 1 cut(s) 169
FaiI YATR 7 cut(s) 45, 102, 114, 116, 167, 180, 231
FatI CATG 1 cut(s) 165
FspBI CTAG 1 cut(s) 195
FspI TGCGCA 1 cut(s) 158
GlaI GCGC 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 31
HhaI GCGC 1 cut(s) 159
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 1 cut(s) 258
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 2 cut(s) 28, 265
HpyCH4V TGCA 3 cut(s) 59, 94, 191
HpySE526I ACGT 2 cut(s) 28, 265
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 1 cut(s) 157
LpnPI CCDG 3 cut(s) 22, 49, 98
LweI GCATC 2 cut(s) 144, 161
MaeI CTAG 1 cut(s) 195
MaeII ACGT 2 cut(s) 28, 265
MboII GAAGA 2 cut(s) 71, 112
MfeI CAATTG 2 cut(s) 238, 275
MluCI AATT 4 cut(s) 217, 238, 275, 282
MseI TTAA 3 cut(s) 212, 248, 301
MslI CAYNNNNRTG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 37
MunI CAATTG 2 cut(s) 238, 275
MvaI CCWGG 1 cut(s) 37
NlaIII CATG 1 cut(s) 169
NsbI TGCGCA 1 cut(s) 158
Ppu21I YACGTR 2 cut(s) 29, 266
Psp6I CCWGG 1 cut(s) 35
PspGI CCWGG 1 cut(s) 35
RsaI GTAC 2 cut(s) 264, 293
RsaNI GTAC 2 cut(s) 263, 292
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 3 cut(s) 212, 248, 301
ScrFI CCNGG 1 cut(s) 37
SetI ASST 5 cut(s) 27, 31, 72, 90, 268
SfaNI GCATC 2 cut(s) 144, 161
SmiMI CAYNNNNRTG 1 cut(s) 152
SpeI ACTAGT 1 cut(s) 194
Sse9I AATT 4 cut(s) 217, 238, 275, 282
SsiI CCGC 1 cut(s) 98
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 2 cut(s) 31, 268
TasI AATT 4 cut(s) 217, 238, 275, 282
TatI WGTACW 1 cut(s) 291
Tru1I TTAA 3 cut(s) 212, 248, 301
Tru9I TTAA 3 cut(s) 212, 248, 301
TscAI CASTG 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 154
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 228
XapI RAATTY 1 cut(s) 217
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.