Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Forward (+)

26211990 .. 26212325

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0267000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCCGGCGGAGGTGGGAGTTTGGAAGCTCAATGTTGATGGTAGCTTCATTCCAAACACTACTCTAGGCGGTGTGGGAGGTGTTTTACGAGATGATAGAGGTAACTTTAAGGCTGCCTTTGCGAAACCTATCTCAAATGTGGCCTCTGCAAAACAGGTGGAACTTAGGGCTCTAAAAGAGGGTTTAAACTTGGTGGCAGCTGTACAAGTTAGCAAGGTTGTCATCGAGACAGATTGCTTGGATGCTGTATCAAGCATTGCCGACATGCAATATACGTATGTGCATGATGAAGGTCTAATAGATGACATCCGTCAAGAAGTCCATCAGAGACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

111

Amino Acids

11.99

Weight (kDa)

5.01

Isoelectric Point (pI)

18.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	11 - 105	1.1e-16	Reverse transcriptase-like
RNase_H	PF00075	12 - 92	1.6e-06	RNase H

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	8, 69
AfaI	GTAC	1 cut(s)	204
AluBI	AGCT	3 cut(s)	28, 45, 200
AluI	AGCT	3 cut(s)	28, 45, 200
Alw26I	GTCTC	2 cut(s)	221, 322
AlwNI	CAGNNNCTG	1 cut(s)	331
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	113, 197
BanII	GRGCYC	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	100, 209
BccI	CCATC	2 cut(s)	32, 330
BcoDI	GTCTC	2 cut(s)	221, 322
BfaI	CTAG	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	332
BisI	GCNGC	2 cut(s)	114, 198
BlsI	GCNGC	2 cut(s)	115, 199
BmsI	GCATC	1 cut(s)	232
BoxI	GACNNNNGTC	1 cut(s)	309
BsaAI	YACGTR	1 cut(s)	276
Bse118I	RCCGGY	1 cut(s)	4
Bse3DI	GCAATG	1 cut(s)	255
BseGI	GGATG	2 cut(s)	247, 306
BseMI	GCAATG	1 cut(s)	255
BseXI	GCAGC	2 cut(s)	100, 209
BshFI	GGCC	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	5
BsmAI	GTCTC	2 cut(s)	221, 322
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp1407I	TGTACA	1 cut(s)	202
BspACI	CCGC	2 cut(s)	8, 69
BspANI	GGCC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	4
BsrGI	TGTACA	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	4
Bst4CI	ACNGT	1 cut(s)	333
BstAUI	TGTACA	1 cut(s)	202
BstBAI	YACGTR	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	164
BstF5I	GGATG	2 cut(s)	247, 306
BstMAI	GTCTC	2 cut(s)	221, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	268
BstPAI	GACNNNNGTC	1 cut(s)	309
BstSFI	CTRYAG	1 cut(s)	332
BstSNI	TACGTA	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	100, 209
BsuRI	GGCC	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	247, 306
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	203
CspCI	CAANNNNNGTGG	2 cut(s)	138, 173
CviAII	CATG	2 cut(s)	265, 284
CviJI	RGCY	6 cut(s)	28, 45, 113, 143, 170, 200
CviKI_1	RGCY	6 cut(s)	28, 45, 113, 143, 170, 200
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	1 cut(s)	164
DraI	TTTAAA	1 cut(s)	186
EciI	GGCGGA	1 cut(s)	23
Eco105I	TACGTA	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	172
FaeI	CATG	2 cut(s)	268, 287
FaiI	YATR	4 cut(s)	266, 273, 279, 285
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FatI	CATG	2 cut(s)	264, 283
Fnu4HI	GCNGC	2 cut(s)	114, 198
FokI	GGATG	2 cut(s)	254, 293
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	114, 198
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	2 cut(s)	114, 198
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	2 cut(s)	268, 287
HpaII	CCGG	1 cut(s)	5
Hpy188I	TCNGA	1 cut(s)	327
Hpy188III	TCNNGA	2 cut(s)	226, 314
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	3 cut(s)	149, 268, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	2 cut(s)	268, 287
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
LpnPI	CCDG	2 cut(s)	18, 140
Lsp1109I	GCAGC	2 cut(s)	100, 209
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	172
MnlI	CCTC	5 cut(s)	4, 71, 92, 154, 172
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	2 cut(s)	108, 185
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	1 cut(s)	5
MssI	GTTTAAAC	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	119
NaeI	GCCGGC	1 cut(s)	6
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	268, 287
NspI	RCATGY	1 cut(s)	268
PdiI	GCCGGC	1 cut(s)	6
PkrI	GCNGC	2 cut(s)	115, 199
PmeI	GTTTAAAC	1 cut(s)	186
Ppu21I	YACGTR	1 cut(s)	276
PshAI	GACNNNNGTC	1 cut(s)	309
PstNI	CAGNNNCTG	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	108, 185
SatI	GCNGC	2 cut(s)	114, 198
SduI	GDGCHC	1 cut(s)	172
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	332
SnaBI	TACGTA	1 cut(s)	276
SsiI	CCGC	2 cut(s)	8, 69
SspMI	CTAG	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	333
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	225
TatI	WGTACW	1 cut(s)	202
Tru1I	TTAA	2 cut(s)	108, 185
Tru9I	TTAA	2 cut(s)	108, 185
TseI	GCWGC	2 cut(s)	113, 197
TspDTI	ATGAA	2 cut(s)	37, 303
TspGWI	ACGGA	1 cut(s)	299
XceI	RCATGY	1 cut(s)	268
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.