Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Forward (+)

22426303 .. 22428517

Gene Structure 2215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G270100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCTTTTTGGGAGGGAACAAATGGGGCTTCTCAGCATCATTCGAAAAATTAAAAGGAAGGAAAAAGAAATTCGTATACTCATGGTTGGGCTTGACAATTCTGGCAAGACTACCATTGTTCTCAGGATTAATGGAGAGGACACCAGCGTTGTCAGTCCCACACTCGGCTTCAACATCAAGACCATCACTTACCAAAAGTATACCCTTAATATATGGGATGTCGGGGGACAGAAAACAATAAGATCTTACTGGAGAAACTATTTTGAGCAAACTGATGGTCTGGTATGGGTAGTTGACAGTTCAGATCTTAGAAGGTTGGATGACTGCAAAATGGAACTTGATAATCTTTTGAAGGAAGAGAGGCTATCTGGATCATCCTTATTGATACTAGCAAATAAACAGGACATAAAAGGTGCCCTTACTCCAGAAGAAATTGCTAAGGTTTTGAACTTGGAGGCGATGGATAAAACTCGGCATTGGGAAATTGTTGGCTGCAGTGCATACACGGGAGATGGACTGCTTGAGGGATTTGATTGGTTGGTCCAAGATATTGCCTCTCGGATCTATGTGTTGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

193

Amino Acids

21.95

Weight (kDa)

5.61

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	413
AccI	GTMKAC	2 cut(s)	76, 200
AclWI	GGATC	2 cut(s)	379, 569
AcsI	RAATTY	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	3 cut(s)	172, 352, 448
AlwI	GGATC	2 cut(s)	379, 569
ApeKI	GCWGC	1 cut(s)	492
ApoI	RAATTY	1 cut(s)	69
ArsI	GACNNNNNNTTYG	2 cut(s)	262, 294
AseI	ATTAAT	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	541
AsuII	TTCGAA	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	541
BaeGI	GKGCMC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	413
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	4 cut(s)	191, 269, 454, 506
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	493
BglII	AGATCT	2 cut(s)	242, 304
BisI	GCNGC	1 cut(s)	493
BlsI	GCNGC	1 cut(s)	494
Bme18I	GGWCC	1 cut(s)	541
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	1 cut(s)	415
BmsI	GCATC	1 cut(s)	45
BpmI	CTGGAG	2 cut(s)	271, 408
Bpu10I	CCTNAGC	1 cut(s)	438
Bpu14I	TTCGAA	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	542
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	254
BseGI	GGATG	3 cut(s)	223, 325, 374
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	2 cut(s)	46, 136
BseNI	ACTGG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	418
BseXI	GCAGC	1 cut(s)	479
BshNI	GGYRCC	1 cut(s)	413
BslFI	GGGAC	2 cut(s)	141, 240
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmFI	GGGAC	2 cut(s)	141, 240
Bsp119I	TTCGAA	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	4 cut(s)	242, 304, 371, 561
BspCNI	CTCAG	2 cut(s)	45, 135
BspLI	GGNNCC	1 cut(s)	415
BspMAI	CTGCAG	1 cut(s)	497
BspPI	GGATC	2 cut(s)	379, 569
BspT104I	TTCGAA	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	254
BssMI	GATC	4 cut(s)	242, 304, 371, 561
BssNAI	GTATAC	2 cut(s)	77, 201
Bst1107I	GTATAC	2 cut(s)	77, 201
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	351
BstBI	TTCGAA	1 cut(s)	43
BstDEI	CTNAG	4 cut(s)	32, 122, 308, 438
BstF5I	GGATG	3 cut(s)	223, 325, 374
BstKTI	GATC	4 cut(s)	245, 307, 374, 564
BstMBI	GATC	4 cut(s)	242, 304, 371, 561
BstSFI	CTRYAG	1 cut(s)	493
BstSLI	GKGCMC	1 cut(s)	418
BstV1I	GCAGC	1 cut(s)	479
BstX2I	RGATCY	3 cut(s)	242, 304, 561
BstYI	RGATCY	3 cut(s)	242, 304, 561
BstZ17I	GTATAC	2 cut(s)	77, 201
BtgZI	GCGATG	1 cut(s)	473
BtsCI	GGATG	3 cut(s)	223, 325, 374
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	1 cut(s)	502
Cfr13I	GGNCC	1 cut(s)	541
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	5 cut(s)	28, 91, 168, 364, 492
CviKI_1	RGCY	5 cut(s)	28, 91, 168, 364, 492
DdeI	CTNAG	4 cut(s)	32, 122, 308, 438
DpnI	GATC	4 cut(s)	244, 306, 373, 563
DpnII	GATC	4 cut(s)	242, 304, 371, 561
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	541
FaeI	CATG	1 cut(s)	85
FaiI	YATR	9 cut(s)	77, 83, 201, 212, 214, 286, 407, 502, 567
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	2 cut(s)	141, 240
FatI	CATG	1 cut(s)	81
FblI	GTMKAC	2 cut(s)	76, 200
Fnu4HI	GCNGC	1 cut(s)	493
FokI	GGATG	3 cut(s)	230, 332, 361
Fsp4HI	GCNGC	1 cut(s)	493
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	1 cut(s)	493
GsuI	CTGGAG	2 cut(s)	271, 408
Hin1II	CATG	1 cut(s)	85
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
Hpy166II	GTNNAC	3 cut(s)	77, 201, 295
Hpy188I	TCNGA	2 cut(s)	304, 561
Hpy188III	TCNNGA	4 cut(s)	124, 178, 369, 425
Hpy8I	GTNNAC	3 cut(s)	77, 201, 295
HpyAV	CCTTC	3 cut(s)	52, 306, 346
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	3 cut(s)	327, 495, 500
HpyF3I	CTNAG	4 cut(s)	32, 122, 308, 438
Hsp92II	CATG	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	242, 304, 371, 561
LpnPI	CCDG	8 cut(s)	87, 109, 157, 235, 266, 354, 386, 438
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	389
MalI	GATC	4 cut(s)	244, 306, 373, 563
MboI	GATC	4 cut(s)	242, 304, 371, 561
MboII	GAAGA	2 cut(s)	368, 440
MflI	RGATCY	3 cut(s)	242, 304, 561
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	5 cut(s)	48, 69, 97, 432, 483
MmeI	TCCRAC	2 cut(s)	297, 552
MnlI	CCTC	6 cut(s)	6, 130, 354, 448, 517, 565
MseI	TTAA	3 cut(s)	51, 129, 207
NdeII	GATC	4 cut(s)	242, 304, 371, 561
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	1 cut(s)	415
NmeAIII	GCCGAG	2 cut(s)	144, 451
NspV	TTCGAA	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	494
PshBI	ATTAAT	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	415
PspPI	GGNCC	1 cut(s)	541
PstI	CTGCAG	1 cut(s)	497
PsuI	RGATCY	3 cut(s)	242, 304, 561
SaqAI	TTAA	3 cut(s)	51, 129, 207
SatI	GCNGC	1 cut(s)	493
Sau3AI	GATC	4 cut(s)	242, 304, 371, 561
Sau96I	GGNCC	1 cut(s)	541
SduI	GDGCHC	1 cut(s)	418
SetI	ASST	3 cut(s)	317, 415, 444
SfaNI	GCATC	1 cut(s)	45
SfcI	CTRYAG	1 cut(s)	493
SfuI	TTCGAA	1 cut(s)	43
SinI	GGWCC	1 cut(s)	541
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	5 cut(s)	48, 69, 97, 432, 483
SspMI	CTAG	1 cut(s)	389
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	1 cut(s)	43
TasI	AATT	5 cut(s)	48, 69, 97, 432, 483
Tru1I	TTAA	3 cut(s)	51, 129, 207
Tru9I	TTAA	3 cut(s)	51, 129, 207
TscAI	CASTG	1 cut(s)	502
TseI	GCWGC	1 cut(s)	492
TspRI	CASTG	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	541
VspI	ATTAAT	1 cut(s)	129
XapI	RAATTY	1 cut(s)	69
XmiI	GTMKAC	2 cut(s)	76, 200
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.