Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Reverse (-)

51430124 .. 51432251

Gene Structure 2128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G027560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGAAATCCGCACCAATGAAAAACTGCGGACTGCGGTTGACAATTCGGGCAAGACTACGATTGTGCTCACGATTCATGGGGAGGACACCAACCTTGTCACTCCCACTCTCGGCTTCAACATCAACACCCTCACTTACCAAAATTTATTGAATTTGTATTTATATGATTTTGGTATATGGGATGTGGGGGGTCAAAATACAATACCATCTTATTGGAGAAACTATTTTGAACAAACTGATGGTCTTAGGTTATCAGGATCATCCTTATTGATACTAGAAAATAAGCAGGACATAAAAGGTGCCCTTACTCTAGAAGAAATTTCCAAGGTAAGGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

112

Amino Acids

12.71

Weight (kDa)

5.02

Isoelectric Point (pI)

25.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 82	4.6e-19	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	299
AciI	CCGC	3 cut(s)	10, 28, 35
AclWI	GGATC	1 cut(s)	265
AcsI	RAATTY	3 cut(s)	142, 151, 318
AfiI	CCNNNNNNNGG	2 cut(s)	110, 330
AgsI	TTSAA	3 cut(s)	118, 151, 230
Alw21I	GWGCWC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	265
ApoI	RAATTY	3 cut(s)	142, 151, 318
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
BaeGI	GKGCMC	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	69
BccI	CCATC	2 cut(s)	214, 233
BfaI	CTAG	3 cut(s)	275, 311, 337
BmiI	GGNNCC	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 330
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	2 cut(s)	187, 260
BseLI	CCNNNNNNNGG	2 cut(s)	110, 330
BseSI	GKGCMC	1 cut(s)	304
BshNI	GGYRCC	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	110, 330
Bsp1286I	GDGCHC	2 cut(s)	69, 304
Bsp143I	GATC	1 cut(s)	257
BspACI	CCGC	3 cut(s)	10, 28, 35
BspLI	GGNNCC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	265
BspT107I	GGYRCC	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	245
BstF5I	GGATG	2 cut(s)	187, 260
BstKTI	GATC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	257
BstSLI	GKGCMC	1 cut(s)	304
BstXI	CCANNNNNNTGG	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	187, 260
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	2 cut(s)	114, 334
CviKI_1	RGCY	2 cut(s)	114, 334
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	1 cut(s)	259
DpnII	GATC	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	1 cut(s)	80
FaiI	YATR	6 cut(s)	78, 163, 165, 176, 178, 293
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FatI	CATG	1 cut(s)	76
FokI	GGATG	2 cut(s)	194, 247
FspBI	CTAG	3 cut(s)	275, 311, 337
Hin1II	CATG	1 cut(s)	80
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188III	TCNNGA	3 cut(s)	70, 255, 311
Hpy8I	GTNNAC	1 cut(s)	40
HpyF3I	CTNAG	1 cut(s)	245
Hsp92II	CATG	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	257
LpnPI	CCDG	2 cut(s)	240, 272
MaeI	CTAG	3 cut(s)	275, 311, 337
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	259
MboI	GATC	1 cut(s)	257
MboII	GAAGA	1 cut(s)	326
MhlI	GDGCHC	2 cut(s)	69, 304
MluCI	AATT	4 cut(s)	43, 142, 151, 318
MnlI	CCTC	2 cut(s)	76, 140
NdeII	GATC	1 cut(s)	257
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	1 cut(s)	301
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	301
Sau3AI	GATC	1 cut(s)	257
SduI	GDGCHC	2 cut(s)	69, 304
SetI	ASST	4 cut(s)	96, 251, 301, 330
Sse9I	AATT	4 cut(s)	43, 142, 151, 318
SsiI	CCGC	3 cut(s)	10, 28, 35
SspMI	CTAG	3 cut(s)	275, 311, 337
StyI	CCWWGG	1 cut(s)	324
TasI	AATT	4 cut(s)	43, 142, 151, 318
TfiI	GAWTC	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	2 cut(s)	33, 65
XapI	RAATTY	3 cut(s)	142, 151, 318
XbaI	TCTAGA	1 cut(s)	310
XspI	CTAG	3 cut(s)	275, 311, 337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.