Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Reverse (-)

16140844 .. 16143148

Gene Structure 2305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g12480.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGGACGACACCAGCCTTGTCACTCCCACCCTCGGCTTCAACATCAAGACCCTCACTTACCTCAAGTATACGCTCAATATATGGGATGTGGGGGGGTCAGAAAACGATACGATCTTATTGGAGAAACTATTTTGAACAGACTGATGGTCTTGTATGGGTGGTTGACAGTTCTGATCTTAGACGATTAGACGACTGCAAAATGGAGCTCCATAATCTTCTAAAGGAAGAGAGGCTATCAGGATCCTCTTTATTGAGACTAGCAAATAAGCAGGGCATAAGAGGTGCCCTTACTCTAGAAGAAATTTCCAAGGTTTTGAACTTGGAGGCAATGGATAAAACTCGACACTGTAATATTGTTGGCTGCAGTGCATACACAGGTGTGGGACTGCTTGTAGGATTTGATTGGTTGGTCCAAGACATTGCCTCTAGGATCTCTGTGCTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

150

Amino Acids

16.55

Weight (kDa)

7.72

Isoelectric Point (pI)

49.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	32 - 86	1.8e-18	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	70
AclWI	GGATC	3 cut(s)	237, 250, 440
AcsI	RAATTY	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	3 cut(s)	42, 137, 319
AhdI	GACNNNNNGTC	1 cut(s)	147
AleI	CACNNNNGTG	1 cut(s)	380
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	3 cut(s)	237, 250, 440
ApeKI	GCWGC	1 cut(s)	363
ApoI	RAATTY	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	412
BaeGI	GKGCMC	1 cut(s)	289
BamHI	GGATCC	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	3 cut(s)	260, 296, 429
BfmI	CTRYAG	1 cut(s)	364
BisI	GCNGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	412
BmeRI	GACNNNNNGTC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	2 cut(s)	244, 286
BpuEI	CTTGAG	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	33, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse3DI	GCAATG	2 cut(s)	336, 420
BseDI	CCNNGG	2 cut(s)	33, 309
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	2 cut(s)	336, 420
BseSI	GKGCMC	1 cut(s)	289
BseXI	GCAGC	1 cut(s)	350
BshNI	GGYRCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	210
BslFI	GGGAC	2 cut(s)	19, 399
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	2 cut(s)	19, 399
Bsp1286I	GDGCHC	2 cut(s)	210, 289
Bsp143I	GATC	4 cut(s)	113, 175, 242, 432
BspLI	GGNNCC	2 cut(s)	244, 286
BspMAI	CTGCAG	1 cut(s)	368
BspPI	GGATC	3 cut(s)	237, 250, 440
BspT107I	GGYRCC	1 cut(s)	284
BsrDI	GCAATG	2 cut(s)	336, 420
BssECI	CCNNGG	2 cut(s)	33, 309
BssMI	GATC	4 cut(s)	113, 175, 242, 432
BssNAI	GTATAC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	309
Bst1107I	GTATAC	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	170, 350
Bst6I	CTCTTC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	93
BstKTI	GATC	4 cut(s)	116, 178, 245, 435
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	4 cut(s)	113, 175, 242, 432
BstSFI	CTRYAG	1 cut(s)	364
BstSLI	GKGCMC	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	350
BstX2I	RGATCY	2 cut(s)	242, 432
BstYI	RGATCY	2 cut(s)	242, 432
BstZ17I	GTATAC	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	93
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	2 cut(s)	346, 373
Cfr13I	GGNCC	1 cut(s)	412
CviJI	RGCY	5 cut(s)	17, 38, 208, 235, 363
CviKI_1	RGCY	5 cut(s)	17, 38, 208, 235, 363
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	4 cut(s)	115, 177, 244, 434
DpnII	GATC	4 cut(s)	113, 175, 242, 432
DriI	GACNNNNNGTC	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	222
Eam1105I	GACNNNNNGTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	412
Eco53kI	GAGCTC	1 cut(s)	208
EcoICRI	GAGCTC	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	309
FaiI	YATR	7 cut(s)	71, 82, 84, 157, 213, 278, 373
FaqI	GGGAC	2 cut(s)	19, 399
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	364
FokI	GGATG	1 cut(s)	100
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	364
FspBI	CTAG	3 cut(s)	260, 296, 429
GluI	GCNGC	1 cut(s)	364
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
Hpy166II	GTNNAC	2 cut(s)	71, 166
Hpy188I	TCNGA	2 cut(s)	102, 175
Hpy188III	TCNNGA	3 cut(s)	48, 240, 296
Hpy8I	GTNNAC	2 cut(s)	71, 166
HpyCH4III	ACNGT	2 cut(s)	170, 350
HpyCH4V	TGCA	3 cut(s)	198, 366, 371
HpyF3I	CTNAG	1 cut(s)	179
Kzo9I	GATC	4 cut(s)	113, 175, 242, 432
LmnI	GCTCC	2 cut(s)	205, 213
LpnPI	CCDG	4 cut(s)	27, 225, 257, 363
Lsp1109I	GCAGC	1 cut(s)	350
MaeI	CTAG	3 cut(s)	260, 296, 429
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	4 cut(s)	115, 177, 244, 434
MboI	GATC	4 cut(s)	113, 175, 242, 432
MboII	GAAGA	3 cut(s)	209, 239, 311
MflI	RGATCY	2 cut(s)	242, 432
MhlI	GDGCHC	2 cut(s)	210, 289
MluCI	AATT	1 cut(s)	303
MnlI	CCTC	8 cut(s)	43, 64, 73, 225, 256, 275, 319, 436
MslI	CAYNNNNRTG	1 cut(s)	380
NdeII	GATC	4 cut(s)	113, 175, 242, 432
NlaIV	GGNNCC	2 cut(s)	244, 286
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	1 cut(s)	21
OliI	CACNNNNGTG	1 cut(s)	380
PkrI	GCNGC	1 cut(s)	365
Psp124BI	GAGCTC	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	244, 286
PspPI	GGNCC	1 cut(s)	412
PstI	CTGCAG	1 cut(s)	368
PsuI	RGATCY	2 cut(s)	242, 432
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	210
SatI	GCNGC	1 cut(s)	364
Sau3AI	GATC	4 cut(s)	113, 175, 242, 432
Sau96I	GGNCC	1 cut(s)	412
SduI	GDGCHC	2 cut(s)	210, 289
SetI	ASST	5 cut(s)	65, 210, 286, 315, 382
SfcI	CTRYAG	1 cut(s)	364
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	1 cut(s)	303
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	3 cut(s)	260, 296, 429
SstI	GAGCTC	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	2 cut(s)	170, 350
TaqI	TCGA	1 cut(s)	343
TasI	AATT	1 cut(s)	303
TscAI	CASTG	2 cut(s)	353, 373
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	1 cut(s)	363
Tsp45I	GTSAC	1 cut(s)	21
TspRI	CASTG	2 cut(s)	353, 373
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	1 cut(s)	303
XbaI	TCTAGA	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	70
XspI	CTAG	3 cut(s)	260, 296, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.