Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Reverse (-)

19912362 .. 19919110

Gene Structure 6749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG132000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAGTACGACGGTCACAAAAGCACCTGTTAAGAGGCCCGCAGTTGCCGTCAACATCAGGCCGTTGATTACCTCCGAGATTTTGGTCGGCTGCACCGATTGCATTTCCTCTTGCTCGCACAGAGTCTTCACCTCCGCCTCCAGCAACATATTTCCTCCATCAGATGCTCGATCTGACGATCCAGATCCCTATGAGACGTCATCGTTTCACCTCTTCTTCCCAAGCTTTTTCCTCATATCTCAAACCACCACTGATTCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

87

Amino Acids

9.47

Weight (kDa)

5.13

Isoelectric Point (pI)

79.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	200
AciI	CCGC	2 cut(s)	39, 135
AclWI	GGATC	2 cut(s)	173, 179
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	1 cut(s)	7
AluBI	AGCT	1 cut(s)	225
AluI	AGCT	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	173, 179
AoxI	GGCC	2 cut(s)	35, 59
ApeKI	GCWGC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	2 cut(s)	121, 200
BbsI	GAAGAC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	1 cut(s)	166
BceAI	ACGGC	2 cut(s)	32, 46
BcoDI	GTCTC	1 cut(s)	188
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	36
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	124
BsaBI	GATNNNNATC	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	197
Bse8I	GATNNNNATC	1 cut(s)	183
BseJI	GATNNNNATC	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	77
BsgI	GTGCAG	1 cut(s)	76
BshFI	GGCC	2 cut(s)	37, 61
BsmAI	GTCTC	1 cut(s)	188
BsmBI	CGTCTC	1 cut(s)	188
BsnI	GGCC	2 cut(s)	37, 61
Bsp143I	GATC	3 cut(s)	170, 178, 184
BspACI	CCGC	2 cut(s)	39, 135
BspANI	GGCC	2 cut(s)	37, 61
BspPI	GGATC	2 cut(s)	173, 179
BssMI	GATC	3 cut(s)	170, 178, 184
BssNI	GRCGYC	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	39, 116
BstKTI	GATC	3 cut(s)	173, 181, 187
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	3 cut(s)	170, 178, 184
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	37, 61
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	39, 116
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	6
CviJI	RGCY	4 cut(s)	37, 61, 90, 225
CviKI_1	RGCY	4 cut(s)	37, 61, 90, 225
CviQI	GTAC	1 cut(s)	6
DpnI	GATC	3 cut(s)	172, 180, 186
DpnII	GATC	3 cut(s)	170, 178, 184
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	124
Esp3I	CGTCTC	1 cut(s)	188
FaiI	YATR	3 cut(s)	149, 192, 236
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	91
GsuI	CTGGAG	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	37, 61
Hin1I	GRCGYC	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HindIII	AAGCTT	1 cut(s)	223
HinfI	GANTC	2 cut(s)	123, 254
HphI	GGTGA	2 cut(s)	121, 200
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	4 cut(s)	76, 163, 175, 259
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	52
Hpy99I	CGWCG	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	2 cut(s)	93, 102
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	197
Kzo9I	GATC	3 cut(s)	170, 178, 184
LpnPI	CCDG	4 cut(s)	39, 43, 154, 195
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	1 cut(s)	154
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	3 cut(s)	172, 180, 186
MboI	GATC	3 cut(s)	170, 178, 184
MboII	GAAGA	3 cut(s)	118, 205, 208
MflI	RGATCY	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	132
MnlI	CCTC	8 cut(s)	27, 82, 118, 142, 148, 165, 221, 242
MseI	TTAA	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeII	GATC	3 cut(s)	170, 178, 184
NmuCI	GTSAC	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	92
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	3 cut(s)	170, 178, 184
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	132
SetI	ASST	6 cut(s)	28, 74, 134, 200, 213, 227
SfaNI	GCATC	1 cut(s)	154
SsiI	CCGC	2 cut(s)	39, 135
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	1 cut(s)	90
Tsp45I	GTSAC	1 cut(s)	13
TspRI	CASTG	1 cut(s)	256
ZraI	GACGTC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.