Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Reverse (-)

21768165 .. 21773310

Gene Structure 5146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGGGAGGACACCAGTCTTGTCACTCCCGCCCTCAGCTTCAACATCAACACCCTCACTCACCAAAAGTAACTTCTTTCTTTTATGCAACACTAGCAATGATTTCGGTTTATTGAATTTGTATTTAGATGATTTTGGCAGGTATACACTCAATATATGGAATGTGGGGGATCAAAATACAGTACCATCTTATTGGAGAAACTATTTTGAACAAACTGATGGTCTTGTATACAGTTCAGATCTTAGAAGATTAGATGGCTGTAAATTGGAGCTCCATAATCTTTTGAAGGAGAGAGGTTATCAGGATCGTCCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006457 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

105

Amino Acids

12.11

Weight (kDa)

5.66

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	47 - 100	1.1e-11	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	129
AccI	GTMKAC	2 cut(s)	143, 228
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	2 cut(s)	177, 312
AcsI	RAATTY	1 cut(s)	115
AfaI	GTAC	1 cut(s)	183
AgsI	TTSAA	4 cut(s)	42, 115, 209, 286
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	2 cut(s)	38, 271
AluI	AGCT	2 cut(s)	38, 271
Alw21I	GWGCWC	1 cut(s)	273
AlwI	GGATC	2 cut(s)	177, 312
ApoI	RAATTY	1 cut(s)	115
ArsI	GACNNNNNNTTYG	2 cut(s)	205, 237
AsuHPI	GGTGA	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	273
BbvCI	CCTCAGC	1 cut(s)	34
BccI	CCATC	3 cut(s)	193, 212, 248
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BfaI	CTAG	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	129
BglII	AGATCT	1 cut(s)	238
BoxI	GACNNNNGTC	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	169, 238, 304
BspACI	CCGC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	47
BspMI	ACCTGC	1 cut(s)	129
BspPI	GGATC	2 cut(s)	177, 312
BsrDI	GCAATG	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	14
BssMI	GATC	3 cut(s)	169, 238, 304
BssNAI	GTATAC	2 cut(s)	144, 229
Bst1107I	GTATAC	2 cut(s)	144, 229
Bst4CI	ACNGT	2 cut(s)	181, 233
BstDEI	CTNAG	2 cut(s)	34, 242
BstKTI	GATC	3 cut(s)	172, 241, 307
BstMBI	GATC	3 cut(s)	169, 238, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstPAI	GACNNNNGTC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	238
BstXI	CCANNNNNNTGG	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	238
BstZ17I	GTATAC	2 cut(s)	144, 229
BveI	ACCTGC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	182
CviJI	RGCY	3 cut(s)	38, 258, 271
CviKI_1	RGCY	3 cut(s)	38, 258, 271
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	2 cut(s)	34, 242
DpnI	GATC	3 cut(s)	171, 240, 306
DpnII	GATC	3 cut(s)	169, 238, 304
Ecl136II	GAGCTC	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	271
EcoICRI	GAGCTC	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	273
FaiI	YATR	6 cut(s)	85, 144, 155, 157, 229, 276
FauI	CCCGC	1 cut(s)	36
FblI	GTMKAC	2 cut(s)	143, 228
FriOI	GRGCYC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	144, 229
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	2 cut(s)	144, 229
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	2 cut(s)	181, 233
HpyCH4V	TGCA	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	2 cut(s)	34, 242
Kzo9I	GATC	3 cut(s)	169, 238, 304
LmnI	GCTCC	2 cut(s)	268, 276
LpnPI	CCDG	3 cut(s)	27, 124, 287
MaeI	CTAG	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	21, 68
MalI	GATC	3 cut(s)	171, 240, 306
MboI	GATC	3 cut(s)	169, 238, 304
MboII	GAAGA	1 cut(s)	258
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	2 cut(s)	115, 263
MnlI	CCTC	3 cut(s)	43, 64, 287
MwoI	GCNNNNNNNGC	1 cut(s)	93
NdeII	GATC	3 cut(s)	169, 238, 304
NmuCI	GTSAC	1 cut(s)	21
PshAI	GACNNNNGTC	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	273
Sau3AI	GATC	3 cut(s)	169, 238, 304
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	4 cut(s)	40, 143, 273, 298
SgeI	CNNG	7 cut(s)	26, 31, 40, 105, 151, 236, 314
Sse9I	AATT	2 cut(s)	115, 263
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	93
SstI	GAGCTC	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	181, 233
TasI	AATT	2 cut(s)	115, 263
TseFI	GTSAC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	21
XapI	RAATTY	1 cut(s)	115
XmiI	GTMKAC	2 cut(s)	143, 228
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.