Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Forward (+)

26222500 .. 26225142

Gene Structure 2643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0267200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCCTGTGGTGGAGCCTTACACGGGAATCCATGTGCGGCACTCGGCGGCAGTTTATGCCCCGCGGCCGGTCGGGAGGGAGAGGGAAGAAGAGTTTGCGATCTCAGTCAGGTTCTACAAGCCATGCTATATCCGACGTTCGCTGTCCGATCCACCCCATATTGAACGGAGCCTCATAACACATATGGTTGTGTTGCTCCCTTTCTCCATGGTCAAGCAAAAACGTCATGAGTCATTTTATAGAGGGATGATGAAGCAGTTTCTTTCGGATATAGGTGTCTCTGAAACTCTACATACAGAGATTCTCGATAAGTTGTTCCAGGTGATTGAAGCTGCCGAGACCTACGAGGTGCCTATTGTTTTGATCATATTCGAGAGTACTGACCGGAGGGATAGTGATGAGATCTTGAGTTTCACTCCTACAGCTGAATCTGCAATCGAGGGTTTGGAGAAAGTGAGACTTGATGCTGCCATTATTGGACAATCACCGATGTGTGTTATATGTTGGAAGGATTTTGCACCCGAAGATGTTGGTCAGCTGATGGTTACTCGCATGCCCTGCTCTCACTGTTATCATGGAGATTGCATTGTCCGCTGGCTGAGCGTTAATCATCTATGTCCCATGTGCCGATACCCGATGCCAGTGGAGACCCAGCCATTATTATCATCGAATCCCCTGAGTCCTCCTCCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

231

Amino Acids

26.39

Weight (kDa)

5.85

Isoelectric Point (pI)

66.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	161 - 210	1.1e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	164 - 210	2.8e-11	Ring finger domain
zf-RING_11	PF17123	165 - 196	2e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	349
AccII	CGCG	1 cut(s)	64
AciI	CCGC	5 cut(s)	37, 47, 62, 64, 592
AclWI	GGATC	1 cut(s)	143
AcoI	YGGCCR	1 cut(s)	65
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	2 cut(s)	23, 67
AgsI	TTSAA	2 cut(s)	164, 329
AjnI	CCWGG	1 cut(s)	318
AleI	CACNNNNGTG	1 cut(s)	490
AluBI	AGCT	3 cut(s)	332, 425, 538
AluI	AGCT	3 cut(s)	332, 425, 538
Alw26I	GTCTC	4 cut(s)	283, 332, 451, 641
AlwI	GGATC	1 cut(s)	143
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	2 cut(s)	332, 467
AsuHPI	GGTGA	2 cut(s)	334, 477
BanI	GGYRCC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	319, 454
BccI	CCATC	1 cut(s)	535
BciT130I	CCWGG	1 cut(s)	320
BclI	TGATCA	1 cut(s)	363
BcoDI	GTCTC	4 cut(s)	283, 332, 451, 641
BfmI	CTRYAG	1 cut(s)	420
BglII	AGATCT	1 cut(s)	402
BisI	GCNGC	5 cut(s)	38, 48, 65, 333, 468
BlpI	GCTNAGC	1 cut(s)	599
BlsI	GCNGC	5 cut(s)	39, 49, 66, 334, 469
BmcAI	AGTACT	1 cut(s)	379
Bme1390I	CCNGG	1 cut(s)	320
BmiI	GGNNCC	3 cut(s)	15, 170, 351
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	2 cut(s)	454, 627
BplI	GAGNNNNNCTC	3 cut(s)	400, 432, 670
Bpu1102I	GCTNAGC	1 cut(s)	599
BpuEI	CTTGAG	1 cut(s)	427
BsaI	GGTCTC	2 cut(s)	332, 641
BsaJI	CCNNGG	2 cut(s)	62, 207
BsaWI	WCCGGW	1 cut(s)	384
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 67
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	641
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	2 cut(s)	62, 207
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	23, 67
BseMII	CTCAG	3 cut(s)	117, 590, 668
BseNI	ACTGG	1 cut(s)	641
BseRI	GAGGAG	1 cut(s)	675
BseX3I	CGGCCG	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	319, 454
BseYI	CCCAGC	1 cut(s)	651
Bsh1236I	CGCG	1 cut(s)	64
Bsh1285I	CGRYCG	2 cut(s)	68, 72
BshFI	GGCC	1 cut(s)	67
BshNI	GGYRCC	1 cut(s)	349
BsiEI	CGRYCG	2 cut(s)	68, 72
BsiSI	CCGG	2 cut(s)	68, 385
BslFI	GGGAC	1 cut(s)	603
BslI	CCNNNNNNNGG	2 cut(s)	23, 67
BsmAI	GTCTC	4 cut(s)	283, 332, 451, 641
BsmFI	GGGAC	1 cut(s)	603
BsnI	GGCC	1 cut(s)	67
Bso31I	GGTCTC	2 cut(s)	332, 641
Bsp143I	GATC	4 cut(s)	99, 148, 363, 402
Bsp1720I	GCTNAGC	1 cut(s)	599
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	5 cut(s)	37, 47, 62, 64, 592
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	3 cut(s)	116, 591, 669
BspFNI	CGCG	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	3 cut(s)	15, 170, 351
BspPI	GGATC	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	349
BspTNI	GGTCTC	2 cut(s)	332, 641
BsrFI	RCCGGY	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	641
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	62, 207
BssMI	GATC	4 cut(s)	99, 148, 363, 402
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	1 cut(s)	569
Bst6I	CTCTTC	1 cut(s)	84
BstAPI	GCANNNNNTGC	2 cut(s)	56, 558
BstC8I	GCNNGC	2 cut(s)	554, 596
BstDEI	CTNAG	3 cut(s)	103, 599, 677
BstDSI	CCRYGG	2 cut(s)	62, 207
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	64
BstKTI	GATC	4 cut(s)	102, 151, 366, 405
BstMAI	GTCTC	4 cut(s)	283, 332, 451, 641
BstMBI	GATC	4 cut(s)	99, 148, 363, 402
BstMCI	CGRYCG	2 cut(s)	68, 72
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 431, 558, 591, 600
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	420
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	2 cut(s)	319, 454
BstX2I	RGATCY	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	402
BstZI	CGGCCG	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	67
BtgI	CCRYGG	2 cut(s)	62, 207
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	565, 648
Cac8I	GCNNGC	2 cut(s)	554, 596
CciI	TCATGA	1 cut(s)	226
Cfr10I	RCCGGY	1 cut(s)	67
Cfr42I	CCGCGG	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	7 cut(s)	32, 123, 208, 227, 553, 575, 622
CviJI	RGCY	9 cut(s)	16, 67, 121, 171, 332, 425, 538, 598, 655
CviKI_1	RGCY	9 cut(s)	16, 67, 121, 171, 332, 425, 538, 598, 655
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	3 cut(s)	103, 599, 677
DpnI	GATC	4 cut(s)	101, 150, 365, 404
DpnII	GATC	4 cut(s)	99, 148, 363, 402
EaeI	YGGCCR	1 cut(s)	65
EagI	CGGCCG	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
EclXI	CGGCCG	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	207
Eco31I	GGTCTC	2 cut(s)	332, 641
Eco52I	CGGCCG	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	7 cut(s)	35, 126, 211, 230, 556, 578, 625
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FaqI	GGGAC	1 cut(s)	603
FatI	CATG	7 cut(s)	31, 122, 207, 226, 552, 574, 621
FauI	CCCGC	1 cut(s)	69
FauNDI	CATATG	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	363
Fnu4HI	GCNGC	5 cut(s)	38, 48, 65, 333, 468
FokI	GGATG	1 cut(s)	259
Fsp4HI	GCNGC	5 cut(s)	38, 48, 65, 333, 468
GluI	GCNGC	5 cut(s)	38, 48, 65, 333, 468
GsaI	CCCAGC	1 cut(s)	655
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	2 cut(s)	68, 385
Hin1II	CATG	7 cut(s)	35, 126, 211, 230, 556, 578, 625
HinfI	GANTC	6 cut(s)	27, 230, 301, 428, 670, 679
HpaII	CCGG	2 cut(s)	68, 385
HphI	GGTGA	2 cut(s)	334, 477
Hpy188I	TCNGA	4 cut(s)	134, 148, 268, 283
Hpy188III	TCNNGA	5 cut(s)	73, 227, 305, 373, 406
Hpy99I	CGWCG	1 cut(s)	138
HpyAV	CCTTC	1 cut(s)	502
HpyCH4III	ACNGT	1 cut(s)	569
HpyCH4IV	ACGT	2 cut(s)	136, 223
HpyCH4V	TGCA	3 cut(s)	434, 518, 585
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 431, 558, 591, 600
HpyF3I	CTNAG	3 cut(s)	103, 599, 677
HpySE526I	ACGT	2 cut(s)	136, 223
Hsp92II	CATG	7 cut(s)	35, 126, 211, 230, 556, 578, 625
Ksp22I	TGATCA	1 cut(s)	363
KspI	CCGCGG	1 cut(s)	65
Kzo9I	GATC	4 cut(s)	99, 148, 363, 402
LmnI	GCTCC	3 cut(s)	13, 168, 201
Lsp1109I	GCAGC	2 cut(s)	319, 454
LweI	GCATC	2 cut(s)	454, 627
MaeII	ACGT	2 cut(s)	136, 223
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	4 cut(s)	101, 150, 365, 404
MboI	GATC	4 cut(s)	99, 148, 363, 402
MboII	GAAGA	3 cut(s)	98, 101, 536
MflI	RGATCY	1 cut(s)	402
MluCI	AATT	1 cut(s)	691
MlyI	GAGTC	2 cut(s)	239, 688
MmeI	TCCRAC	2 cut(s)	157, 485
MnlI	CCTC	9 cut(s)	69, 75, 182, 236, 340, 381, 433, 693, 696
MseI	TTAA	1 cut(s)	606
MslI	CAYNNNNRTG	1 cut(s)	490
MspA1I	CMGCKG	4 cut(s)	64, 425, 538, 594
MspI	CCGG	2 cut(s)	68, 385
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	5 cut(s)	56, 431, 558, 591, 600
NcoI	CCATGG	1 cut(s)	207
NdeI	CATATG	1 cut(s)	183
NdeII	GATC	4 cut(s)	99, 148, 363, 402
NlaIII	CATG	7 cut(s)	35, 126, 211, 230, 556, 578, 625
NlaIV	GGNNCC	3 cut(s)	15, 170, 351
NmeAIII	GCCGAG	2 cut(s)	23, 361
NspI	RCATGY	1 cut(s)	556
OliI	CACNNNNGTG	1 cut(s)	490
PaeI	GCATGC	1 cut(s)	556
PagI	TCATGA	1 cut(s)	226
PfeI	GAWTC	4 cut(s)	27, 301, 428, 670
PkrI	GCNGC	5 cut(s)	39, 49, 66, 334, 469
PleI	GAGTC	2 cut(s)	238, 687
PpsI	GAGTC	2 cut(s)	238, 687
Psp6I	CCWGG	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	651
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	3 cut(s)	15, 170, 351
PsuI	RGATCY	1 cut(s)	402
PvuII	CAGCTG	2 cut(s)	425, 538
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
RseI	CAYNNNNRTG	1 cut(s)	490
SacII	CCGCGG	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	606
SatI	GCNGC	5 cut(s)	38, 48, 65, 333, 468
Sau3AI	GATC	4 cut(s)	99, 148, 363, 402
ScaI	AGTACT	1 cut(s)	379
SchI	GAGTC	2 cut(s)	239, 688
ScrFI	CCNGG	1 cut(s)	320
SfaNI	GCATC	2 cut(s)	454, 627
SfcI	CTRYAG	1 cut(s)	420
Sfr303I	CCGCGG	1 cut(s)	65
SgrBI	CCGCGG	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	490
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	1 cut(s)	691
SsiI	CCGC	5 cut(s)	37, 47, 62, 64, 592
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	569
TaiI	ACGT	2 cut(s)	139, 226
TaqI	TCGA	4 cut(s)	306, 372, 438, 668
TasI	AATT	1 cut(s)	691
TatI	WGTACW	1 cut(s)	377
TauI	GCSGC	3 cut(s)	40, 50, 67
TfiI	GAWTC	4 cut(s)	27, 301, 428, 670
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TscAI	CASTG	2 cut(s)	572, 648
TseI	GCWGC	2 cut(s)	332, 467
TspDTI	ATGAA	1 cut(s)	266
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	2 cut(s)	572, 648
XceI	RCATGY	1 cut(s)	556
ZrmI	AGTACT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.