Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Reverse (-)

69246070 .. 69247386

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG487400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGTCTTCTCAGCATTATTCGAAAAATTAAAAGGAAGGAGAAAGAAATACGTATACTCATGGTCGGGCTTGACAATTCGGGAAAAACTACGATTGTGCTGAGGATTAATGGGGAGGGCACCAGCGTCGTCAGTCCCACCCTGGGCTTCAACATCAAGACCCTCACTTACCAGAAGTATACACTTAACATATGGGATGTGGGGGGTCAAAAAACAATACGATCTTATTGGAGAAACTATTTTGAACAAACTGATGGTCTCGTATGGGTAGTTGACAGTTCTGATCTTAGAAGATTAGATGACTGCAAAATGGAGCTTGATAATCTTTTGAAGGAAGAGAGGCTATCAGGATCGTCCTTACTGATACTAGCAAATAAGCAGGACATAAAAGGTGCCCTTACTCCACAAGAAATTGCCAACGTTTTGAACTTGGAGGCTATGGATAAAACTCGACACTGGAATATTGTTGGCTGCAGTGCATACACGGGTGAGGGGCTGCTTCAGGGATTTGATTGGTTGGTCCAAGACATTGCCTCTCGGATCTATGTGCTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

185

Amino Acids

21.01

Weight (kDa)

7.7

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	4 - 177	5.6e-68	ADP-ribosylation factor family
SRPRB	PF09439	16 - 145	2e-09	Signal recognition particle receptor beta subunit
Roc	PF08477	18 - 128	6.1e-12	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	18 - 177	7.9e-12	Ras family
MMR_HSR1	PF01926	18 - 126	2e-06	50S ribosome-binding GTPase
Gtr1_RagA	PF04670	18 - 111	4.8e-06	Gtr1/RagA G protein conserved region
G-alpha	PF00503	46 - 103	1.5e-06	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	119, 392
AccI	GTMKAC	2 cut(s)	55, 179
AclI	AACGTT	1 cut(s)	420
AclWI	GGATC	2 cut(s)	358, 548
AcuI	CTGAAG	1 cut(s)	485
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	4 cut(s)	151, 245, 331, 427
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	2 cut(s)	358, 548
ApeKI	GCWGC	2 cut(s)	471, 496
ArsI	GACNNNNNNTTYG	2 cut(s)	241, 273
AseI	ATTAAT	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	520
AsuHPI	GGTGA	1 cut(s)	500
AsuII	TTCGAA	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	520
BaeGI	GKGCMC	2 cut(s)	122, 397
BanI	GGYRCC	2 cut(s)	119, 392
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	458, 483
BccI	CCATC	1 cut(s)	248
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	1 cut(s)	368
BfmI	CTRYAG	1 cut(s)	472
BisI	GCNGC	2 cut(s)	472, 497
BlsI	GCNGC	2 cut(s)	473, 498
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	2 cut(s)	121, 394
BmrFI	CCNGG	1 cut(s)	143
Bpu10I	CCTNAGC	1 cut(s)	101
Bpu14I	TTCGAA	1 cut(s)	22
BsaAI	YACGTR	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	141, 142
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	528
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	141, 142
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	2 cut(s)	25, 92
BseNI	ACTGG	1 cut(s)	461
BseSI	GKGCMC	2 cut(s)	122, 397
BseXI	GCAGC	2 cut(s)	458, 483
BshNI	GGYRCC	2 cut(s)	119, 392
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	120
Bso31I	GGTCTC	1 cut(s)	263
Bsp119I	TTCGAA	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	122, 397
Bsp143I	GATC	4 cut(s)	221, 283, 350, 540
BspCNI	CTCAG	2 cut(s)	24, 93
BspLI	GGNNCC	2 cut(s)	121, 394
BspMAI	CTGCAG	1 cut(s)	476
BspPI	GGATC	2 cut(s)	358, 548
BspT104I	TTCGAA	1 cut(s)	22
BspT107I	GGYRCC	2 cut(s)	119, 392
BspTNI	GGTCTC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	528
BsrI	ACTGG	1 cut(s)	461
BssECI	CCNNGG	2 cut(s)	141, 142
BssMI	GATC	4 cut(s)	221, 283, 350, 540
BssNAI	GTATAC	2 cut(s)	56, 180
Bst1107I	GTATAC	2 cut(s)	56, 180
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	330
BstBAI	YACGTR	1 cut(s)	53
BstBI	TTCGAA	1 cut(s)	22
BstDEI	CTNAG	3 cut(s)	11, 101, 287
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	4 cut(s)	224, 286, 353, 543
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	4 cut(s)	221, 283, 350, 540
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	141
BstSFI	CTRYAG	1 cut(s)	472
BstSLI	GKGCMC	2 cut(s)	122, 397
BstSNI	TACGTA	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	458, 483
BstX2I	RGATCY	1 cut(s)	540
BstYI	RGATCY	1 cut(s)	540
BstZ17I	GTATAC	2 cut(s)	56, 180
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	481
BtsIMutI	CAGTG	2 cut(s)	454, 481
Cfr13I	GGNCC	1 cut(s)	520
CseI	GACGC	1 cut(s)	115
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	7 cut(s)	70, 147, 316, 343, 437, 471, 496
CviKI_1	RGCY	7 cut(s)	70, 147, 316, 343, 437, 471, 496
DdeI	CTNAG	3 cut(s)	11, 101, 287
DpnI	GATC	4 cut(s)	223, 285, 352, 542
DpnII	GATC	4 cut(s)	221, 283, 350, 540
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco105I	TACGTA	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	141
FaeI	CATG	1 cut(s)	64
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	1 cut(s)	60
FauNDI	CATATG	1 cut(s)	191
FblI	GTMKAC	2 cut(s)	55, 179
Fnu4HI	GCNGC	2 cut(s)	472, 497
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	472, 497
FspBI	CTAG	1 cut(s)	368
GluI	GCNGC	2 cut(s)	472, 497
HgaI	GACGC	1 cut(s)	115
Hin1II	CATG	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	3 cut(s)	56, 180, 274
Hpy188I	TCNGA	2 cut(s)	283, 540
Hpy188III	TCNNGA	3 cut(s)	81, 157, 348
Hpy8I	GTNNAC	3 cut(s)	56, 180, 274
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	31, 325
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	2 cut(s)	52, 420
HpyCH4V	TGCA	3 cut(s)	306, 474, 479
HpyF3I	CTNAG	3 cut(s)	11, 101, 287
HpySE526I	ACGT	2 cut(s)	52, 420
Hsp92II	CATG	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	221, 283, 350, 540
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	8 cut(s)	128, 136, 155, 185, 333, 365, 442, 488
Lsp1109I	GCAGC	2 cut(s)	458, 483
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	2 cut(s)	52, 420
MalI	GATC	4 cut(s)	223, 285, 352, 542
MboI	GATC	4 cut(s)	221, 283, 350, 540
MboII	GAAGA	2 cut(s)	303, 347
MflI	RGATCY	1 cut(s)	540
MhlI	GDGCHC	2 cut(s)	122, 397
MluCI	AATT	3 cut(s)	27, 76, 411
MnlI	CCTC	7 cut(s)	96, 109, 173, 333, 427, 484, 544
MseI	TTAA	3 cut(s)	30, 108, 186
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
NdeI	CATATG	1 cut(s)	191
NdeII	GATC	4 cut(s)	221, 283, 350, 540
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	2 cut(s)	121, 394
NspV	TTCGAA	1 cut(s)	22
PasI	CCCWGGG	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	473, 498
Ppu21I	YACGTR	1 cut(s)	53
PshBI	ATTAAT	1 cut(s)	108
Psp1406I	AACGTT	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	121, 394
PspPI	GGNCC	1 cut(s)	520
PstI	CTGCAG	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	540
SaqAI	TTAA	3 cut(s)	30, 108, 186
SatI	GCNGC	2 cut(s)	472, 497
Sau3AI	GATC	4 cut(s)	221, 283, 350, 540
Sau96I	GGNCC	1 cut(s)	520
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	2 cut(s)	122, 397
SetI	ASST	4 cut(s)	55, 318, 394, 423
SfcI	CTRYAG	1 cut(s)	472
SfuI	TTCGAA	1 cut(s)	22
SinI	GGWCC	1 cut(s)	520
SnaBI	TACGTA	1 cut(s)	53
Sse9I	AATT	3 cut(s)	27, 76, 411
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	2 cut(s)	55, 423
TaqI	TCGA	2 cut(s)	22, 451
TasI	AATT	3 cut(s)	27, 76, 411
Tru1I	TTAA	3 cut(s)	30, 108, 186
Tru9I	TTAA	3 cut(s)	30, 108, 186
TscAI	CASTG	2 cut(s)	461, 481
TseI	GCWGC	2 cut(s)	471, 496
TspRI	CASTG	2 cut(s)	461, 481
VpaK11BI	GGWCC	1 cut(s)	520
VspI	ATTAAT	1 cut(s)	108
XmiI	GTMKAC	2 cut(s)	55, 179
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.