Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Forward (+)

38504833 .. 38505198

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0348000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGTTTAATAGCACAGTTACCGAAGATGATGGTTTCTTATGTCCTGCTGATGGGGCCATAATGATAACAGCAGCAAGTCATTTACCTTACAACAGGAATGGTTTCAAATTCTTCACAAATGCTGGAGGGCTTGGGAAAGCTGACATTAAAAACATCTTGGAGCATGCTACAGATATTTACAACAAGTGGTGGGATAGAGATGGAGTGGTGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

71

Amino Acids

7.81

Weight (kDa)

4.99

Isoelectric Point (pI)

22.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGM_PMM_I	PF02878	16 - 59	1.8e-06	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	106
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	3 cut(s)	23, 44, 194
BfmI	CTRYAG	1 cut(s)	168
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	83
BshFI	GGCC	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	50
BsnI	GGCC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	55
Bst4CI	ACNGT	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	167
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	56
Cac8I	GCNNGC	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	54
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	3 cut(s)	56, 130, 140
CviKI_1	RGCY	3 cut(s)	56, 130, 140
FaeI	CATG	1 cut(s)	167
FaiI	YATR	3 cut(s)	40, 59, 165
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	167
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	3 cut(s)	57, 79, 108
Lsp1109I	GCAGC	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	16
MboII	GAAGA	2 cut(s)	35, 103
MluCI	AATT	1 cut(s)	107
MnlI	CCTC	1 cut(s)	119
MroXI	GAANNNNTTC	1 cut(s)	101
MseI	TTAA	2 cut(s)	6, 147
MwoI	GCNNNNNNNGC	1 cut(s)	53
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	167
PaeI	GCATGC	1 cut(s)	167
PdmI	GAANNNNTTC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	6, 147
SatI	GCNGC	1 cut(s)	72
Sau96I	GGNCC	1 cut(s)	54
SetI	ASST	2 cut(s)	88, 142
SfcI	CTRYAG	1 cut(s)	168
SgeI	CNNG	8 cut(s)	56, 87, 106, 135, 143, 169, 176, 196
SphI	GCATGC	1 cut(s)	167
Sse9I	AATT	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	16
TasI	AATT	1 cut(s)	107
Tru1I	TTAA	2 cut(s)	6, 147
Tru9I	TTAA	2 cut(s)	6, 147
TseI	GCWGC	1 cut(s)	71
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.