Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Forward (+)

1839561 .. 1843092

Gene Structure 3532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000538

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGTCTTCTCAGCATTATTCGAAAAATTAAAAGGAAGGAGAAAGAAATACGTATACTCATGGTCGGGCTTGACAATTCGGGAAAAACTACGATTGTGCTGAGGATTAATGGGGAGGACACCAGCGTCGTCAGTCCCACCCTCGGCTTCAACATCAAGACCCTCACTTACCAGAAGTATACACTTAACATATGGGATGTGGGGGGTCAAAAAACAATACGATCTTATTGGAGAAACTATTTTGAACAAACTGATGGTCTCGTATGGGTAGTTGACAGTTCTGATCTTAGAAGATTAGATGACTGTAAAATGGAGCTTGATAATCTTTTGAAGGAAGAGAGGCTATCAGGATCGTCCTTACTGATACTAGCAAATAAGCAGGACATAAAAGGTGCCCTTATGCCCCAAGAAATTGCCAAGGTTTTGAACTTGGAGGCTATGGATAAAACTCGACACTGGAATATTGTTGGCTGCAGTGCATACACGGGTGAGGGGCTGCTTCAGGGATTTGATTGCGTTCTACCTCATTCGCATAGCATTAGATGGGCTGAGGTCAATGAATTCAAATTTATTATTGCTGGTAATCTGCAAAGGGTTGAAGAAATAAATGATATCCATTCTTTATTAAGCTTTCGAACATCTTTGGAAAGGATAGAGCTTATGGAAAAGCTGCCGGAGGTCCGTACTGATATGGCGGTTGAGCAAAGAGATAATCAAGTTACTGGAAACTCAAAAAAGAAAAAAAAAATGCAATCGGTAACTGATGTCATAGTGAAAGCATTACAAGCACCAAGGATTGAAGACGCACATCACACCAGCAAAGGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

277

Amino Acids

31.53

Weight (kDa)

8.84

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	4 - 173	2.4e-65	ADP-ribosylation factor family
SRPRB	PF09439	16 - 145	2e-08	Signal recognition particle receptor beta subunit
Roc	PF08477	18 - 128	1.1e-11	Ras of Complex, Roc, domain of DAPkinase
Gtr1_RagA	PF04670	18 - 109	1.7e-06	Gtr1/RagA G protein conserved region
MMR_HSR1	PF01926	18 - 126	4.3e-06	50S ribosome-binding GTPase
Ras	PF00071	19 - 172	2.5e-10	Ras family
G-alpha	PF00503	46 - 100	2.5e-06	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	392
AccI	GTMKAC	2 cut(s)	55, 179
AciI	CCGC	1 cut(s)	695
AclWI	GGATC	1 cut(s)	358
AcsI	RAATTY	2 cut(s)	560, 566
AcuI	CTGAAG	1 cut(s)	485
AfaI	GTAC	1 cut(s)	685
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	7 cut(s)	151, 245, 331, 427, 565, 599, 800
AluBI	AGCT	4 cut(s)	316, 630, 658, 670
AluI	AGCT	4 cut(s)	316, 630, 658, 670
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	358
ApeKI	GCWGC	3 cut(s)	471, 496, 670
ApoI	RAATTY	2 cut(s)	560, 566
ArsI	GACNNNNNNTTYG	2 cut(s)	241, 273
AseI	ATTAAT	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	679
AsuHPI	GGTGA	1 cut(s)	500
AsuII	TTCGAA	2 cut(s)	22, 634
AvaII	GGWCC	1 cut(s)	679
BaeGI	GKGCMC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	807
BbvCI	CCTCAGC	2 cut(s)	101, 549
BbvI	GCAGC	3 cut(s)	458, 483, 657
BccI	CCATC	2 cut(s)	248, 537
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	1 cut(s)	368
BfmI	CTRYAG	1 cut(s)	472
BisI	GCNGC	3 cut(s)	472, 497, 671
BlsI	GCNGC	3 cut(s)	473, 498, 672
Bme18I	GGWCC	1 cut(s)	679
BmgT120I	GGNCC	1 cut(s)	679
BmiI	GGNNCC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	807
Bpu10I	CCTNAGC	2 cut(s)	101, 549
Bpu14I	TTCGAA	2 cut(s)	22, 634
BsaAI	YACGTR	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	3 cut(s)	142, 417, 791
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	2 cut(s)	461, 727
BseDI	CCNNGG	3 cut(s)	142, 417, 791
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMII	CTCAG	3 cut(s)	25, 92, 540
BseNI	ACTGG	2 cut(s)	461, 727
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	3 cut(s)	458, 483, 657
BshNI	GGYRCC	1 cut(s)	392
BsiSI	CCGG	1 cut(s)	674
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	120
Bso31I	GGTCTC	1 cut(s)	263
Bsp119I	TTCGAA	2 cut(s)	22, 634
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	3 cut(s)	221, 283, 350
BspACI	CCGC	1 cut(s)	695
BspCNI	CTCAG	3 cut(s)	24, 93, 541
BspLI	GGNNCC	1 cut(s)	394
BspMAI	CTGCAG	1 cut(s)	476
BspPI	GGATC	1 cut(s)	358
BspT104I	TTCGAA	2 cut(s)	22, 634
BspT107I	GGYRCC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	461, 727
BssECI	CCNNGG	3 cut(s)	142, 417, 791
BssMI	GATC	3 cut(s)	221, 283, 350
BssNAI	GTATAC	2 cut(s)	56, 180
BssT1I	CCWWGG	2 cut(s)	417, 791
Bst1107I	GTATAC	2 cut(s)	56, 180
Bst4CI	ACNGT	2 cut(s)	278, 305
Bst6I	CTCTTC	1 cut(s)	330
BstBAI	YACGTR	1 cut(s)	53
BstBI	TTCGAA	2 cut(s)	22, 634
BstDEI	CTNAG	4 cut(s)	11, 101, 287, 549
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	3 cut(s)	224, 286, 353
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	3 cut(s)	221, 283, 350
BstMWI	GCNNNNNNNGC	1 cut(s)	785
BstSFI	CTRYAG	1 cut(s)	472
BstSLI	GKGCMC	1 cut(s)	397
BstSNI	TACGTA	1 cut(s)	53
BstV1I	GCAGC	3 cut(s)	458, 483, 657
BstV2I	GAAGAC	1 cut(s)	807
BstZ17I	GTATAC	2 cut(s)	56, 180
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	481
BtsIMutI	CAGTG	2 cut(s)	454, 481
Cfr13I	GGNCC	1 cut(s)	679
CseI	GACGC	2 cut(s)	115, 812
Csp6I	GTAC	1 cut(s)	684
CviAII	CATG	1 cut(s)	61
CviQI	GTAC	1 cut(s)	684
DdeI	CTNAG	4 cut(s)	11, 101, 287, 549
DpnI	GATC	3 cut(s)	223, 285, 352
DpnII	GATC	3 cut(s)	221, 283, 350
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco105I	TACGTA	1 cut(s)	53
Eco130I	CCWWGG	2 cut(s)	417, 791
Eco31I	GGTCTC	1 cut(s)	263
Eco32I	GATATC	1 cut(s)	613
Eco47I	GGWCC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	485
EcoRI	GAATTC	1 cut(s)	560
EcoRV	GATATC	1 cut(s)	613
EcoT14I	CCWWGG	2 cut(s)	417, 791
ErhI	CCWWGG	2 cut(s)	417, 791
FaeI	CATG	1 cut(s)	64
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	1 cut(s)	60
FauNDI	CATATG	1 cut(s)	191
FblI	GTMKAC	2 cut(s)	55, 179
Fnu4HI	GCNGC	3 cut(s)	472, 497, 671
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	3 cut(s)	472, 497, 671
FspBI	CTAG	1 cut(s)	368
GluI	GCNGC	3 cut(s)	472, 497, 671
HapII	CCGG	1 cut(s)	674
HgaI	GACGC	2 cut(s)	115, 812
Hin1II	CATG	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	628
HpaII	CCGG	1 cut(s)	674
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	3 cut(s)	56, 180, 274
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	3 cut(s)	81, 157, 348
Hpy8I	GTNNAC	3 cut(s)	56, 180, 274
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	31, 325
HpyCH4III	ACNGT	2 cut(s)	278, 305
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	4 cut(s)	474, 479, 589, 751
HpyF10VI	GCNNNNNNNGC	1 cut(s)	785
HpyF3I	CTNAG	4 cut(s)	11, 101, 287, 549
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	221, 283, 350
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	9 cut(s)	136, 185, 333, 365, 442, 488, 564, 687, 708
Lsp1109I	GCAGC	3 cut(s)	458, 483, 657
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	2 cut(s)	718, 757
MalI	GATC	3 cut(s)	223, 285, 352
MboI	GATC	3 cut(s)	221, 283, 350
MboII	GAAGA	4 cut(s)	303, 347, 611, 812
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	5 cut(s)	27, 76, 411, 560, 566
MseI	TTAA	4 cut(s)	30, 108, 186, 626
MspI	CCGG	1 cut(s)	674
MwoI	GCNNNNNNNGC	1 cut(s)	785
NdeI	CATATG	1 cut(s)	191
NdeII	GATC	3 cut(s)	221, 283, 350
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	394
NmeAIII	GCCGAG	1 cut(s)	123
NspV	TTCGAA	2 cut(s)	22, 634
PkrI	GCNGC	3 cut(s)	473, 498, 672
Ppu21I	YACGTR	1 cut(s)	53
PshBI	ATTAAT	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	1 cut(s)	679
PstI	CTGCAG	1 cut(s)	476
RsaI	GTAC	1 cut(s)	685
RsaNI	GTAC	1 cut(s)	684
SaqAI	TTAA	4 cut(s)	30, 108, 186, 626
SatI	GCNGC	3 cut(s)	472, 497, 671
Sau3AI	GATC	3 cut(s)	221, 283, 350
Sau96I	GGNCC	1 cut(s)	679
SduI	GDGCHC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	472
SfuI	TTCGAA	2 cut(s)	22, 634
SinI	GGWCC	1 cut(s)	679
SnaBI	TACGTA	1 cut(s)	53
Sse9I	AATT	5 cut(s)	27, 76, 411, 560, 566
SsiI	CCGC	1 cut(s)	695
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	1 cut(s)	368
StyI	CCWWGG	2 cut(s)	417, 791
TaaI	ACNGT	2 cut(s)	278, 305
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	3 cut(s)	22, 451, 634
TasI	AATT	5 cut(s)	27, 76, 411, 560, 566
Tru1I	TTAA	4 cut(s)	30, 108, 186, 626
Tru9I	TTAA	4 cut(s)	30, 108, 186, 626
TscAI	CASTG	2 cut(s)	461, 481
TseI	GCWGC	3 cut(s)	471, 496, 670
TspDTI	ATGAA	1 cut(s)	573
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	2 cut(s)	461, 481
VpaK11BI	GGWCC	1 cut(s)	679
VspI	ATTAAT	1 cut(s)	108
XapI	RAATTY	2 cut(s)	560, 566
XmiI	GTMKAC	2 cut(s)	55, 179
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.