Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Reverse (-)

46156859 .. 46158730

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0363900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGATTGTACCGGATAATATGTACAAGTACTGTTTGGGTTGGTTAGTTTCTTTGTTCTGGCCATATGGTTGGTTATTTTCACCCCACAATTTCTGCAAGCATGCGCCAGTTGCACCTACTTCTCACTTAGATCAGCCAGTCTCAGTCACACAAGACATCAGAGGAGGACCCATAAAAAGCTCGAGTTCAGATGAACTCGTCATGCGGAAGCATTCCACCCAAGTTGAGCTAGACATGCCCATTTTGAGGCCTACCCCAAATGTTGCAAATATGCCTCAGCCTGCCCGCCCAAATGTTACAAATATGCTCAATTTGAAGCCTGCCCCAAATGTTGCAAATCCAAATCCCTCTAAACGAACAGAGCTGTTAGAATCAAATTTTATAGACCCTACTGAGCCAAATAAAAGTTTGAAGGTTGAAGATGCTTCTTTTGGTTCCATAAGGGTTTCATCAAACGATAAAATTGAGGCTAATGGAGAGTTGCTTCTTGGACTGTGTTGGAATGTGGGGAATAAGAATGAAGTGGTTACCCCAATTAAGAATCTAGTAGGCACCCAAAAAAAGAAACCAGCAAAATCACATCTGCTTGAGATTTGCACTAAACAAAAATGGGAGCCTCCTGTTTTTGAGTGCTGCAAGGAGGAAGGGCCAAGCCACAGGAGAATGTTCACCTTCAAGGTTAATGTTAAAGTGAATGATCCCAATACAGATCTCGAATGCTTTAGTTCTCCTCATCCGAAAAAGAAAGCTGCAACCGAGCAAGCATCTGAAGGGGCACTGTGGTACTTAAAGCATCTTGGTTATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

269

Amino Acids

30.2

Weight (kDa)

8.74

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DND1_DSRM	PF14709	191 - 264	1.7e-15	double strand RNA binding domain from DEAD END PROTEIN 1
dsrm	PF00035	191 - 260	8.2e-08	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	551
AciI	CCGC	2 cut(s)	205, 286
AclWI	GGATC	1 cut(s)	692
AcoI	YGGCCR	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	1 cut(s)	789
AfaI	GTAC	4 cut(s)	9, 23, 29, 785
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	4 cut(s)	316, 412, 419, 676
AluBI	AGCT	4 cut(s)	180, 229, 364, 749
AluI	AGCT	4 cut(s)	180, 229, 364, 749
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	1 cut(s)	692
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	3 cut(s)	59, 248, 647
ApeKI	GCWGC	2 cut(s)	633, 749
ApoI	RAATTY	1 cut(s)	376
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	2 cut(s)	167, 647
AsuHPI	GGTGA	2 cut(s)	72, 661
AvaI	CYCGRG	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	778
BalI	TGGCCA	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	551
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	620, 736
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	2 cut(s)	230, 545
BglII	AGATCT	1 cut(s)	709
BisI	GCNGC	2 cut(s)	634, 750
BlsI	GCNGC	2 cut(s)	635, 751
BmcAI	AGTACT	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	167, 647
BmiI	GGNNCC	4 cut(s)	169, 436, 553, 615
BmsI	GCATC	3 cut(s)	412, 773, 802
Bpu10I	CCTNAGC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	608
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	2 cut(s)	107, 137
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMII	CTCAG	3 cut(s)	156, 290, 384
BseNI	ACTGG	2 cut(s)	107, 137
BseRI	GAGGAG	2 cut(s)	177, 720
BseSI	GKGCMC	1 cut(s)	778
BseXI	GCAGC	2 cut(s)	620, 736
BshFI	GGCC	3 cut(s)	61, 250, 649
BshNI	GGYRCC	1 cut(s)	551
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	145
BsmI	GAATGC	2 cut(s)	211, 722
BsnI	GGCC	3 cut(s)	61, 250, 649
BsoBI	CYCGRG	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	778
Bsp1407I	TGTACA	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	130, 697, 709
BspACI	CCGC	2 cut(s)	205, 286
BspANI	GGCC	3 cut(s)	61, 250, 649
BspCNI	CTCAG	3 cut(s)	155, 289, 385
BspLI	GGNNCC	4 cut(s)	169, 436, 553, 615
BspPI	GGATC	1 cut(s)	692
BspT107I	GGYRCC	1 cut(s)	551
BsrGI	TGTACA	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	107, 137
BssMI	GATC	3 cut(s)	130, 697, 709
Bst4CI	ACNGT	3 cut(s)	32, 495, 780
BstAUI	TGTACA	1 cut(s)	21
BstC8I	GCNNGC	6 cut(s)	98, 102, 282, 286, 321, 762
BstDEI	CTNAG	4 cut(s)	127, 142, 276, 393
BstEII	GGTNACC	1 cut(s)	526
BstF5I	GGATG	1 cut(s)	733
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	3 cut(s)	133, 700, 712
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	3 cut(s)	130, 697, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 235
BstNSI	RCATGY	2 cut(s)	104, 238
BstPI	GGTNACC	1 cut(s)	526
BstSLI	GKGCMC	1 cut(s)	778
BstV1I	GCAGC	2 cut(s)	620, 736
BstX2I	RGATCY	1 cut(s)	709
BstXI	CCANNNNNNTGG	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	709
BsuRI	GGCC	3 cut(s)	61, 250, 649
BtsCI	GGATG	1 cut(s)	733
BtsIMutI	CAGTG	1 cut(s)	776
Cac8I	GCNNGC	6 cut(s)	98, 102, 282, 286, 321, 762
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	167, 647
Csp6I	GTAC	4 cut(s)	8, 22, 28, 784
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	3 cut(s)	101, 202, 235
CviQI	GTAC	4 cut(s)	8, 22, 28, 784
DdeI	CTNAG	4 cut(s)	127, 142, 276, 393
DpnI	GATC	3 cut(s)	132, 699, 711
DpnII	GATC	3 cut(s)	130, 697, 709
EaeI	YGGCCR	1 cut(s)	59
Eco147I	AGGCCT	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	789
Eco88I	CYCGRG	1 cut(s)	181
Eco91I	GGTNACC	1 cut(s)	526
EcoO109I	RGGNCCY	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	526
FaeI	CATG	3 cut(s)	104, 205, 238
FatI	CATG	3 cut(s)	100, 201, 234
FauI	CCCGC	1 cut(s)	293
FauNDI	CATATG	1 cut(s)	64
Fnu4HI	GCNGC	2 cut(s)	634, 750
FokI	GGATG	1 cut(s)	720
Fsp4HI	GCNGC	2 cut(s)	634, 750
FspBI	CTAG	2 cut(s)	230, 545
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	2 cut(s)	634, 750
HaeIII	GGCC	3 cut(s)	61, 250, 649
HapII	CCGG	1 cut(s)	11
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	104, 205, 238
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HinfI	GANTC	2 cut(s)	371, 541
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	2 cut(s)	72, 661
Hpy166II	GTNNAC	1 cut(s)	669
Hpy188I	TCNGA	4 cut(s)	161, 190, 738, 769
Hpy188III	TCNNGA	1 cut(s)	713
Hpy8I	GTNNAC	1 cut(s)	669
HpyAV	CCTTC	4 cut(s)	406, 638, 682, 764
HpyCH4III	ACNGT	3 cut(s)	32, 495, 780
HpyCH4V	TGCA	7 cut(s)	96, 113, 266, 335, 597, 636, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 235
HpyF3I	CTNAG	4 cut(s)	127, 142, 276, 393
Hsp92II	CATG	3 cut(s)	104, 205, 238
HspAI	GCGC	1 cut(s)	104
Kzo9I	GATC	3 cut(s)	130, 697, 709
LmnI	GCTCC	1 cut(s)	613
LpnPI	CCDG	9 cut(s)	24, 43, 120, 150, 294, 333, 582, 633, 643
Lsp1109I	GCAGC	2 cut(s)	620, 736
LweI	GCATC	3 cut(s)	412, 773, 802
MaeI	CTAG	2 cut(s)	230, 545
MaeIII	GTNAC	3 cut(s)	145, 295, 526
MalI	GATC	3 cut(s)	132, 699, 711
MboI	GATC	3 cut(s)	130, 697, 709
MboII	GAAGA	1 cut(s)	431
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	1 cut(s)	778
MlsI	TGGCCA	1 cut(s)	61
MluCI	AATT	5 cut(s)	88, 310, 376, 462, 534
MluNI	TGGCCA	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	479
MnlI	CCTC	9 cut(s)	155, 158, 240, 285, 358, 460, 627, 634, 741
Mox20I	TGGCCA	1 cut(s)	61
MscI	TGGCCA	1 cut(s)	61
MseI	TTAA	4 cut(s)	537, 681, 687, 788
Msp20I	TGGCCA	1 cut(s)	61
MspI	CCGG	1 cut(s)	11
Mva1269I	GAATGC	2 cut(s)	211, 722
MwoI	GCNNNNNNNGC	2 cut(s)	110, 235
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	3 cut(s)	130, 697, 709
NlaIII	CATG	3 cut(s)	104, 205, 238
NlaIV	GGNNCC	4 cut(s)	169, 436, 553, 615
NmuCI	GTSAC	1 cut(s)	145
NspI	RCATGY	2 cut(s)	104, 238
PaeI	GCATGC	1 cut(s)	104
PaeR7I	CTCGAG	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	250
PctI	GAATGC	2 cut(s)	211, 722
PfeI	GAWTC	2 cut(s)	371, 541
PkrI	GCNGC	2 cut(s)	635, 751
PpuMI	RGGWCCY	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	167
PspEI	GGTNACC	1 cut(s)	526
PspN4I	GGNNCC	4 cut(s)	169, 436, 553, 615
PspPI	GGNCC	2 cut(s)	167, 647
PspPPI	RGGWCCY	1 cut(s)	167
PspXI	VCTCGAGB	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	709
RsaI	GTAC	4 cut(s)	9, 23, 29, 785
RsaNI	GTAC	4 cut(s)	8, 22, 28, 784
SaqAI	TTAA	4 cut(s)	537, 681, 687, 788
SatI	GCNGC	2 cut(s)	634, 750
Sau3AI	GATC	3 cut(s)	130, 697, 709
Sau96I	GGNCC	2 cut(s)	167, 647
ScaI	AGTACT	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	778
SetI	ASST	8 cut(s)	118, 182, 231, 366, 417, 674, 681, 751
SfaNI	GCATC	3 cut(s)	412, 773, 802
Sfr274I	CTCGAG	1 cut(s)	181
SinI	GGWCC	1 cut(s)	167
SlaI	CTCGAG	1 cut(s)	181
SmlI	CTYRAG	2 cut(s)	181, 587
SmoI	CTYRAG	2 cut(s)	181, 587
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	5 cut(s)	88, 310, 376, 462, 534
SseBI	AGGCCT	1 cut(s)	250
SsiI	CCGC	2 cut(s)	205, 286
SspMI	CTAG	2 cut(s)	230, 545
StuI	AGGCCT	1 cut(s)	250
TaaI	ACNGT	3 cut(s)	32, 495, 780
TaqI	TCGA	2 cut(s)	182, 714
TasI	AATT	5 cut(s)	88, 310, 376, 462, 534
TatI	WGTACW	2 cut(s)	21, 27
TfiI	GAWTC	2 cut(s)	371, 541
Tru1I	TTAA	4 cut(s)	537, 681, 687, 788
Tru9I	TTAA	4 cut(s)	537, 681, 687, 788
TscAI	CASTG	1 cut(s)	783
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	633, 749
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	3 cut(s)	207, 438, 534
TspRI	CASTG	1 cut(s)	783
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	376
XceI	RCATGY	2 cut(s)	104, 238
XhoI	CTCGAG	1 cut(s)	181
XspI	CTAG	2 cut(s)	230, 545
ZrmI	AGTACT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.