Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000773

Physical Location & Seq

Genomic Coordinates Forward (+)

47980079 .. 47981252

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG360300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGATGTGGGGACGGTCAAAAAACAATACGATCTTATTGGAGAAACTATTTTGAGCAAACTGATGGTCTAGTATGGGTAGTTGACAGTTCAGATCTTAGAGGATTAGATGACTGCAAAATGGAGCTCGATAATCTTGTAAAGGAAGAGAGGCTATCAGCATCGTCCTTATTGATACTAGCAAATAAGCAGGACATAAAAGGTTCCCTTACTCTAGAAGAAATTTCCAAGGTTTTGAACTTGGAGGCTATGGATAAAACTCGACACTGGAATATTGTTGGCTGCAGTGCATACACGGGTGAGGGACTGCTTGAGGGATTTGATTGTTGGTCCAAGACATTGCCTCTCAGATCTATGTGTTTGACTAATGCCTGGTCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005525 GO:0007021 GO:0007275 GO:0007349 GO:0008150 GO:0009553 GO:0009558 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016043 GO:0017076 GO:0019001 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0034622 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

127

Amino Acids

14.36

Weight (kDa)

4.84

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	6 - 112	2.6e-34	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18390
fragaria_vesca	FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_4g12480 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g30040 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540 FvH4_5g39540
malus_domestica	MD03G1270500.v1.1
prunus_persica	Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.5G036300_v2.0.a1 Prupe.8G270100_v2.0.a1 Prupe.8G270100_v2.0.a1
pyrus_communis	pycom03g21570 pycom11g25830
rosa_chinensis	RchiOBHm_Chr2g0093181 RchiOBHm_Chr5g0004661 RchiOBHm_Chr6g0264421 RchiOBHm_Chr7g0224231 RchiOBHm_Chr7g0241851
rosa_laevigata	RLG00000000538 RLG00000001912
rosa_multiflora	Rmu_sc0001865.1_g000007
rosa_roxburghii	Rroxscaffold_3G00218600 Rroxscaffold_3G00235040
rosa_rugosa	Rorug02G0313600 Rorug02G0313700 Rorug02G0313800 Rorug02G0363900 Rorug03G0267000 Rorug03G0267100 Rorug03G0267200 Rorug03G0268000 Rorug07G0066800 Rorug07G0199700 Rorug07G0221500 Rorug07G0348000
rosa_samantha	Rh5AG128500 Rh6AG132000 Rh6AG319400 Rh6BG129200 Rh6DG114700 Rh7AG365600 Rh7AG502100 Rh7BG330100 Rh7BG357400 Rh7BG473500 Rh7CG020200 Rh7CG153100 Rh7CG518600 Rh7DG020200 Rh7DG360300 Rh7DG487400
rosa_wichuraiana	Rw0G009770 Rw6G027560 Rw7G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw21I	GWGCWC	1 cut(s)	129
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	1 cut(s)	222
ArsI	GACNNNNNNTTYG	2 cut(s)	52, 84
AspS9I	GGNCC	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	330
BanII	GRGCYC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	373
BfaI	CTAG	3 cut(s)	71, 179, 215
BfmI	CTRYAG	1 cut(s)	283
BglII	AGATCT	2 cut(s)	94, 350
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
Bme1390I	CCNGG	1 cut(s)	373
Bme18I	GGWCC	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	373
BmsI	GCATC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	11
BseMI	GCAATG	1 cut(s)	338
BseMII	CTCAG	1 cut(s)	361
BseNI	ACTGG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	129
BslFI	GGGAC	2 cut(s)	26, 318
BsmFI	GGGAC	2 cut(s)	26, 318
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	32, 94, 350
BspCNI	CTCAG	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	3 cut(s)	32, 94, 350
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	17, 89
Bst6I	CTCTTC	1 cut(s)	141
BstDEI	CTNAG	3 cut(s)	98, 347, 378
BstF5I	GGATG	1 cut(s)	11
BstKTI	GATC	3 cut(s)	35, 97, 353
BstMBI	GATC	3 cut(s)	32, 94, 350
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	371
BstSFI	CTRYAG	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	269
BstX2I	RGATCY	2 cut(s)	94, 350
BstYI	RGATCY	2 cut(s)	94, 350
BtsCI	GGATG	1 cut(s)	11
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	265, 292
Cfr13I	GGNCC	1 cut(s)	330
CviJI	RGCY	4 cut(s)	127, 154, 248, 282
CviKI_1	RGCY	4 cut(s)	127, 154, 248, 282
DdeI	CTNAG	3 cut(s)	98, 347, 378
DpnI	GATC	3 cut(s)	34, 96, 352
DpnII	GATC	3 cut(s)	32, 94, 350
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	330
Eco53kI	GAGCTC	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	228
FaiI	YATR	5 cut(s)	76, 197, 251, 292, 356
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FaqI	GGGAC	2 cut(s)	26, 318
Fnu4HI	GCNGC	1 cut(s)	283
FokI	GGATG	1 cut(s)	18
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	283
FspBI	CTAG	3 cut(s)	71, 179, 215
GluI	GCNGC	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	94, 350
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	17, 89
HpyCH4V	TGCA	3 cut(s)	117, 285, 290
HpyF3I	CTNAG	3 cut(s)	98, 347, 378
Kzo9I	GATC	3 cut(s)	32, 94, 350
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	3 cut(s)	176, 253, 358
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	3 cut(s)	71, 179, 215
MalI	GATC	3 cut(s)	34, 96, 352
MboI	GATC	3 cut(s)	32, 94, 350
MboII	GAAGA	2 cut(s)	158, 230
MflI	RGATCY	2 cut(s)	94, 350
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	1 cut(s)	222
MnlI	CCTC	6 cut(s)	95, 144, 238, 295, 307, 354
MspR9I	CCNGG	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	373
NdeII	GATC	3 cut(s)	32, 94, 350
NlaIV	GGNNCC	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	330
PstI	CTGCAG	1 cut(s)	287
PsuI	RGATCY	2 cut(s)	94, 350
SacI	GAGCTC	1 cut(s)	129
SatI	GCNGC	1 cut(s)	283
Sau3AI	GATC	3 cut(s)	32, 94, 350
Sau96I	GGNCC	1 cut(s)	330
ScrFI	CCNGG	1 cut(s)	373
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	3 cut(s)	129, 205, 234
SfaNI	GCATC	1 cut(s)	170
SfcI	CTRYAG	1 cut(s)	283
SinI	GGWCC	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	1 cut(s)	222
SspI	AATATT	1 cut(s)	274
SspMI	CTAG	3 cut(s)	71, 179, 215
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	371
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	17, 89
TaqI	TCGA	2 cut(s)	129, 262
TasI	AATT	1 cut(s)	222
TscAI	CASTG	2 cut(s)	272, 292
TseI	GCWGC	1 cut(s)	282
TspRI	CASTG	2 cut(s)	272, 292
VpaK11BI	GGWCC	1 cut(s)	330
XapI	RAATTY	1 cut(s)	222
XbaI	TCTAGA	1 cut(s)	214
XspI	CTAG	3 cut(s)	71, 179, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.